ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast72g05 |
|---|---|
| Clone Library Name | barley_pub |
>ATXR5_ARATH (Q8VZJ1) Histone-lysine N-methyltransferase ATXR5 (EC 2.1.1.43)| (Trithorax-related protein 5) (TRX-related protein 5) (Protein SET DOMAIN GROUP 15) Length = 352 Score = 62.8 bits (151), Expect = 2e-10 Identities = 27/30 (90%), Positives = 28/30 (93%) Frame = -1 Query: 342 LVADRDISKGERLYYDYNGDEHEYPTHHFV 253 LVA RDISKGERLYYDYNG EHEYPTHHF+ Sbjct: 323 LVATRDISKGERLYYDYNGYEHEYPTHHFL 352
>ATXR6_ARATH (Q9FNE9) Histone-lysine N-methyltransferase ATXR6 (EC 2.1.1.43)| (Trithorax-related protein 6) (TRX-related protein 6) (Protein SET DOMAIN GROUP 34) Length = 349 Score = 61.6 bits (148), Expect = 5e-10 Identities = 27/30 (90%), Positives = 28/30 (93%) Frame = -1 Query: 342 LVADRDISKGERLYYDYNGDEHEYPTHHFV 253 LVA+RDISKGERLYYDYNG EHEYPT HFV Sbjct: 320 LVANRDISKGERLYYDYNGYEHEYPTEHFV 349
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 30.8 bits (68), Expect = 0.87 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%) Frame = -1 Query: 342 LVADRDISKGERLYYDY----NGDEHEYPTH 262 +++ R I KGE L YDY D+HE P H Sbjct: 5221 IISSRRIPKGEELTYDYQFDFEDDQHEIPCH 5251
>YG3W_YEAST (P53293) Hypothetical 44.3 kDa protein in CLC1-PDS2 intergenic| region Length = 376 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 4/34 (11%) Frame = -1 Query: 96 VLFKTV--YPFLKELYIQWNAIQGI--QMSKGTV 7 +L+ T+ +PFLK YI W++I GI ++KG V Sbjct: 87 ILYPTLMKFPFLKNHYIHWSSIVGISLMLTKGEV 120
>RAG2_BRARE (O13034) V(D)J recombination-activating protein 2 (RAG-2)| Length = 530 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +3 Query: 225 CRLNISSCVIQNGELGTRARRRCNRSTASPPWRCP 329 C I I+ GEL RA N S+ PP RCP Sbjct: 41 CPTGIFGVRIKKGELKLRAISFSNNSSYLPPLRCP 75
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%) Frame = -1 Query: 336 ADRDISKGERLYYDY----NGDEHEYPTH 262 ++R I KGE L YDY D+H+ P H Sbjct: 4864 SNRRIQKGEELCYDYKFDFEDDQHKIPCH 4892
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%) Frame = -1 Query: 336 ADRDISKGERLYYDY----NGDEHEYPTH 262 + R I KGE L YDY D+H+ P H Sbjct: 4872 SSRRIQKGEELCYDYKFDFEDDQHKIPCH 4900
>SETD8_HUMAN (Q9NQR1) Histone-lysine N-methyltransferase, H4 lysine-20 specific| (EC 2.1.1.43) (Histone H4-K20 methyltransferase) (H4-K20-HMTase) (SET domain containing lysine methyltransferase 8) (SET domain-containing protein 8) (PR/SET domain-containing Length = 393 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 342 LVADRDISKGERLYYDY 292 L+A RDI+ GE L YDY Sbjct: 361 LIASRDIAAGEELLYDY 377
>SETD8_MOUSE (Q2YDW7) Histone-lysine N-methyltransferase, H4 lysine-20 specific| (EC 2.1.1.43) (Histone H4-K20 methyltransferase) (H4-K20-HMTase) (SET domain containing lysine methyltransferase 8) (SET domain-containing protein 8) Length = 349 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 342 LVADRDISKGERLYYDY 292 L+A RDI+ GE L YDY Sbjct: 317 LIASRDIAAGEELLYDY 333
>SETD8_DROME (Q9VFK6) Histone-lysine N-methyltransferase, H4 lysine-20 specific| (EC 2.1.1.43) (Histone H4-K20 methyltransferase) (H4-K20-HMTase) (dSET8) Length = 691 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = -1 Query: 342 LVADRDISKGERLYYDYNGDEHEYPTHH 259 L+A DI GE L YDY E HH Sbjct: 659 LLAKDDIEPGEELTYDYGDRSKESLLHH 686
>LE756_CAEEL (Q11184) Protein let-756 (Lethal protein 756)| Length = 425 Score = 27.3 bits (59), Expect = 9.6 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = +2 Query: 182 HQHNHFPMITDKMDMQAKHQLMCH 253 H H+H P ++ D Q +HQ H Sbjct: 382 HHHHHHPRVSSSSDPQQRHQSQQH 405
>UXAC_ERWCT (Q6D9H0) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)| (Uronic isomerase) Length = 469 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +2 Query: 8 TVPFDICIP*IAFHWIYNSLRNGYTVLNKTISPFTVQGL 124 TVP I P +HW + LR + V +SP T +G+ Sbjct: 91 TVPHTIGNP--LYHWTHLELRRPFGVTGTLLSPSTAKGI 127
>SETD8_BOVIN (Q2YDJ8) Histone-lysine N-methyltransferase, H4 lysine-20 specific| (EC 2.1.1.43) (Histone H4-K20 methyltransferase) (H4-K20-HMTase) (SET domain containing lysine methyltransferase 8) (SET domain-containing protein 8) Length = 352 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -1 Query: 342 LVADRDISKGERLYYDY 292 L+A RDI GE L YDY Sbjct: 320 LIASRDIEAGEELLYDY 336 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,252,575 Number of Sequences: 219361 Number of extensions: 828980 Number of successful extensions: 1821 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1800 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1818 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
