>ref|XM_463928.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1086

 Score =  103 bits (52), Expect = 4e-19
 Identities = 82/92 (89%)
 Strand = Plus / Minus

                                                                        
Query: 250  tcatacaaaatggtgagttgggtactcgtgctcgtcgccgttgtaatcgtagtacagcct 309
            ||||||||||||||| ||||||||||| |||||    || ||||||||||||||||||||
Sbjct: 1086 tcatacaaaatggtgggttgggtactcatgctccgatccattgtaatcgtagtacagcct 1027

                                            
Query: 310  ctcccccttggagatgtccctgtcggccacca 341
            |||||| ||||||||||||||||  |||||||
Sbjct: 1026 ctcccctttggagatgtccctgttcgccacca 995

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  103 bits (52), Expect = 4e-19
 Identities = 82/92 (89%)
 Strand = Plus / Minus

                                                                           
Query: 250     tcatacaaaatggtgagttgggtactcgtgctcgtcgccgttgtaatcgtagtacagcct 309
               ||||||||||||||| ||||||||||| |||||    || ||||||||||||||||||||
Sbjct: 1192461 tcatacaaaatggtgggttgggtactcatgctccgatccattgtaatcgtagtacagcct 1192402

                                               
Query: 310     ctcccccttggagatgtccctgtcggccacca 341
               |||||| ||||||||||||||||  |||||||
Sbjct: 1192401 ctcccctttggagatgtccctgttcgccacca 1192370

>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0575F10
          Length = 150462

 Score =  103 bits (52), Expect = 4e-19
 Identities = 82/92 (89%)
 Strand = Plus / Minus

                                                                         
Query: 250   tcatacaaaatggtgagttgggtactcgtgctcgtcgccgttgtaatcgtagtacagcct 309
             ||||||||||||||| ||||||||||| |||||    || ||||||||||||||||||||
Sbjct: 23552 tcatacaaaatggtgggttgggtactcatgctccgatccattgtaatcgtagtacagcct 23493

                                             
Query: 310   ctcccccttggagatgtccctgtcggccacca 341
             |||||| ||||||||||||||||  |||||||
Sbjct: 23492 ctcccctttggagatgtccctgttcgccacca 23461

>gb|AC006035.2| Homo sapiens BAC clone RP11-196O16 from 7, complete sequence
          Length = 182372

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 151   tgactctactgtgttgattttt 172
             ||||||||||||||||||||||
Sbjct: 36574 tgactctactgtgttgattttt 36553

>ref|NM_189395.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1158

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 254  acaaaatggtgagttgggtactcgtgctc 282
            |||||||| |||||||||||||| |||||
Sbjct: 1154 acaaaatgatgagttgggtactcatgctc 1126

>gb|AC124604.4| Mus musculus BAC clone RP23-81K14 from chromosome 8, complete sequence
          Length = 220801

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 301    gtacagcctctcccccttgga 321
              |||||||||||||||||||||
Sbjct: 162821 gtacagcctctcccccttgga 162841

>emb|AJ630363.1| Canis familiaris MHC class II region on chromosome CFA12, partial
              sequence, BAC clones 224p2 and 282j14, containing DLA-DQA1
              gene, DLA-DQB1 gene and DLA-DQB pseudogene
          Length = 180560

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 149    gttgactctactgtgttgatttttt 173
              |||||||||||| ||||||||||||
Sbjct: 132137 gttgactctactttgttgatttttt 132113

>gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete
             sequence
          Length = 101647

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 84    ttttgaacaaaacaatttccccatt 108
             |||||||||||| ||||||||||||
Sbjct: 84569 ttttgaacaaaataatttccccatt 84545

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 254      acaaaatggtgagttgggtactcgtgctc 282
                |||||||| |||||||||||||| |||||
Sbjct: 42564998 acaaaatgatgagttgggtactcatgctc 42564970

>gb|AC007603.5| Homo sapiens chromosome 16 clone RP11-305A4, complete sequence
          Length = 196927

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 222    atatgcaggctaaacatcagc 242
              |||||||||||||||||||||
Sbjct: 107050 atatgcaggctaaacatcagc 107070

>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0458E05
          Length = 193577

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 254   acaaaatggtgagttgggtactcgtgctc 282
             |||||||| |||||||||||||| |||||
Sbjct: 85881 acaaaatgatgagttgggtactcatgctc 85853

>gb|AC091492.2| Homo sapiens chromosome 3 clone RP11-335I9 map 3p, complete sequence
          Length = 180963

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 35     tgaatagcattccactggatataca 59
              |||||||||||||||||| ||||||
Sbjct: 100963 tgaatagcattccactgggtataca 100939

>gb|AF016671.3| Caenorhabditis elegans cosmid W09G10, complete sequence
          Length = 35075

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    caaaacaatttccccattca 110
             ||||||||||||||||||||
Sbjct: 19857 caaaacaatttccccattca 19876

>gb|AC140448.3| Mus musculus BAC clone RP23-54G12 from chromosome 9, complete sequence
          Length = 213580

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   ttcaaggtttaaaatccaaa 133
             ||||||||||||||||||||
Sbjct: 87586 ttcaaggtttaaaatccaaa 87605

>gb|AC130540.4| Mus musculus BAC clone RP23-474I3 from chromosome 14, complete sequence
          Length = 201412

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    acagttttgaacaaaacaat 99
             ||||||||||||||||||||
Sbjct: 64533 acagttttgaacaaaacaat 64552

>emb|CR788248.24| Zebrafish DNA sequence from clone CH211-112B1 in linkage group 1,
             complete sequence
          Length = 87741

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   ttttcctatgattacagata 215
             ||||||||||||||||||||
Sbjct: 74319 ttttcctatgattacagata 74300

>emb|CR450808.5| Zebrafish DNA sequence from clone DKEYP-55H4 in linkage group 25,
             complete sequence
          Length = 169887

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   ttttcctatgattacagata 215
             ||||||||||||||||||||
Sbjct: 22021 ttttcctatgattacagata 22002

>gb|AC012358.9| Homo sapiens BAC clone RP11-321E13 from 2, complete sequence
          Length = 162151

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 71    aatggatacacagttttgaacaaaacaa 98
             |||||| ||||||| |||||||||||||
Sbjct: 33185 aatggagacacagtattgaacaaaacaa 33212

>gb|AC078802.14| Homo sapiens 3 BAC RP11-816J6 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 47601

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 47  cactggatatacaattcttt 66
           ||||||||||||||||||||
Sbjct: 654 cactggatatacaattcttt 673

>gb|AC007849.24| Homo sapiens 3 BAC RP11-3K16 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 199835

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   cactggatatacaattcttt 66
            ||||||||||||||||||||
Sbjct: 1444 cactggatatacaattcttt 1425

>gb|AC016706.6| Homo sapiens BAC clone RP11-215D12 from 2, complete sequence
          Length = 184121

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    cttttgacatttgtattcct 34
             ||||||||||||||||||||
Sbjct: 95339 cttttgacatttgtattcct 95320

>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 271     gtactcgtgctcgtcgccgttgta 294
               |||| |||||||||||||||||||
Sbjct: 2094222 gtacccgtgctcgtcgccgttgta 2094199

>emb|BX072569.6| Zebrafish DNA sequence from clone CH211-184B9 in linkage group 22,
             complete sequence
          Length = 144729

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 239   cagctcatgtgtcatacaaaatgg 262
             ||||||||||||||| ||||||||
Sbjct: 99632 cagctcatgtgtcattcaaaatgg 99609

>emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-597A11 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185605

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 34     ttgaatagcattccactggatata 57
              |||||||||||||||||| |||||
Sbjct: 162085 ttgaatagcattccactgcatata 162108

>emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-254P21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 148065

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    ttgaatagcattccactggatata 57
             |||||||||||||||||| |||||
Sbjct: 16150 ttgaatagcattccactgcatata 16127

>dbj|AB059355.1| Physcomitrella patens Sig1 gene for PpSIG1, complete cds
          Length = 4541

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  gatgtccctgtcggccacca 341
            ||||||||||||||||||||
Sbjct: 3595 gatgtccctgtcggccacca 3576

>dbj|AB059354.1| Physcomitrella patens Sig1 mRNA for PpSIG1, complete cds
          Length = 2710

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  gatgtccctgtcggccacca 341
            ||||||||||||||||||||
Sbjct: 2104 gatgtccctgtcggccacca 2085

>dbj|AP000532.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c2F2
          Length = 37599

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    ttgaatagcattccactggatata 57
             |||||||||||||||||| |||||
Sbjct: 33081 ttgaatagcattccactgcatata 33058


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,753,166
Number of Sequences: 3902068
Number of extensions: 3753166
Number of successful extensions: 74104
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74008
Number of HSP's gapped (non-prelim): 93
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)