ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast72g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYSC_SCHPO (O14018) Seryl-tRNA synthetase, cytoplasmic (EC 6.1.1... 30 1.1
2I12R2_MOUSE (P97378) Interleukin-12 receptor beta-2 chain precur... 28 4.0
3FA18B_PONPY (Q5R9I4) Protein FAM18B 28 4.0
4FA18B_HUMAN (Q9NYZ1) Protein FAM18B 28 4.0
5Y750_METJA (Q58160) Hypothetical protein MJ0750 28 6.8
6ASSY_SULTO (Q970V0) Argininosuccinate synthase (EC 6.3.4.5) (Cit... 27 8.9

>SYSC_SCHPO (O14018) Seryl-tRNA synthetase, cytoplasmic (EC 6.1.1.11)|
           (Serine--tRNA ligase) (SerRS)
          Length = 450

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 101 QRQNVEIVCTVIQI*--KKKKTGWLISAACLYSRSACC*LSDHHVPEG 238
           Q +N+EI C V ++   +KK    L S  C   R+ CC L ++  P+G
Sbjct: 369 QSRNLEIRCGVKKMGDREKKYVHCLNSTLCATERALCCILENYQTPDG 416



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>I12R2_MOUSE (P97378) Interleukin-12 receptor beta-2 chain precursor (IL-12|
           receptor beta-2) (IL-12R-beta2)
          Length = 874

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 207 QQADREYRQAAEINHPVFFFFYICITVQTISTFCLCYF 94
           Q  +RE+    + N   F    ICI + T+ TF + YF
Sbjct: 624 QGNEREFCPQGKANWKAFVISSICIAIITVGTFSIRYF 661



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>FA18B_PONPY (Q5R9I4) Protein FAM18B|
          Length = 205

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 177 AEINHPVFFFFYICITVQTISTFCLCYFLIIRLRRPVCSRLKKLLCQLIIIGNPT-RLFV 1
           A+I HPV  FF++   V  I  + LC  L       + + +  L C    + N T RL V
Sbjct: 29  AKIRHPVASFFHLFFRVSAIIVYLLCELLSSSFITCMVTIILLLSCDFWAVKNVTGRLMV 88



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>FA18B_HUMAN (Q9NYZ1) Protein FAM18B|
          Length = 205

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 177 AEINHPVFFFFYICITVQTISTFCLCYFLIIRLRRPVCSRLKKLLCQLIIIGNPT-RLFV 1
           A+I HPV  FF++   V  I  + LC  L       + + +  L C    + N T RL V
Sbjct: 29  AKIRHPVASFFHLFFRVSAIIVYLLCELLSSSFITCMVTIILLLSCDFWAVKNVTGRLMV 88



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>Y750_METJA (Q58160) Hypothetical protein MJ0750|
          Length = 238

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/50 (28%), Positives = 31/50 (62%)
 Frame = -3

Query: 174 EINHPVFFFFYICITVQTISTFCLCYFLIIRLRRPVCSRLKKLLCQLIII 25
           +I+  +FF +++ +T     +FCLC+F II  +  +   + +L+ +L++I
Sbjct: 9   KISQTLFFIYFVFLT-----SFCLCFFGIIE-KFILKGSVGQLIAKLVVI 52



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>ASSY_SULTO (Q970V0) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 390

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 127 YGYTNIEEEKNRVVDFSSLSVFPVRLLLI 213
           YG+  +E  +NRVV F S  V+ V   L+
Sbjct: 244 YGFGRVEHLENRVVGFKSREVYEVPAALV 272


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,068,831
Number of Sequences: 219361
Number of extensions: 992555
Number of successful extensions: 1934
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1934
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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