ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast72g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
2dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
3dbj|AK067563.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
4gb|AC158568.6| Mus musculus chromosome 18, clone RP24-249D7, com... 46 0.088
5gb|AC117540.9| Mus musculus chromosome 18, clone RP23-131B4, com... 46 0.088
6gb|AC116860.15| Mus musculus chromosome 10, clone RP24-407B18, c... 44 0.35
7gb|AC109308.8| Mus musculus chromosome 3, clone RP24-459K16, com... 42 1.4
8emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chro... 42 1.4
9gb|AF407521.1| Varanus rudicollis UMMZ 210506 16S ribosomal RNA ... 42 1.4
10gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete ... 42 1.4
11gb|AC138200.10| Mus musculus chromosome 3, clone RP23-438J19, co... 42 1.4
12gb|AC147143.2| Pan troglodytes BAC clone CH251-267L18 from Y, co... 40 5.4
13gb|AC146018.3| Pan troglodytes BAC clone RP43-135A21 from 7, com... 40 5.4
14gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosom... 40 5.4
15gb|AC091464.8| Mus musculus chromosome 14, clone RP23-97N1, comp... 40 5.4
16gb|AC147515.1| Pan troglodytes BAC clone CH251-558O8 from Y, com... 40 5.4
17gb|AC135115.5| Mus musculus BAC clone RP24-251K13 from chromosom... 40 5.4
18gb|AC111014.6| Mus musculus BAC clone RP24-371P8 from chromosome... 40 5.4
19gb|AC073107.7| Homo sapiens BAC clone RP11-479O9 from 7, complet... 40 5.4
20gb|AC096582.1| Homo sapiens BAC clone RP11-638I8 from 7, complet... 40 5.4
21gb|AC097646.2| Homo sapiens cosmid clone XXcos-2185C14 from 7, c... 40 5.4
22gb|AC139191.1| Pan troglodytes BAC clone RP43-32G19 from Y, comp... 40 5.4
23gb|AC142301.1| Pan troglodytes BAC clone RP43-127N2 from Y, comp... 40 5.4
24emb|AL954642.9| Human DNA sequence from clone RP11-885N19 on chr... 40 5.4
25emb|AL669831.13| Human DNA sequence from clone RP11-206L10 on ch... 40 5.4
26emb|AL627309.15| Human DNA sequence from clone RP11-34P13 on chr... 40 5.4
27emb|AL606534.15| Human DNA sequence from clone RP11-261C10 on ch... 40 5.4
28emb|AL592148.7| Human DNA sequence from clone RP11-378J18 on chr... 40 5.4
29gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 5.4
30emb|AL162718.15| Human DNA sequence from clone RP11-274H24 on ch... 40 5.4
31emb|AL133216.10| Human DNA sequence from clone RP11-291L22 on ch... 40 5.4
32gb|AC091558.7| Homo sapiens chromosome 8, clone RP11-745D6, comp... 40 5.4
33gb|AC016588.9| Homo sapiens chromosome 19 clone CTD-3113P16, com... 40 5.4
34gb|AC182391.3| Pan troglodytes BAC clone CH251-510H16 from chrom... 40 5.4
35gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 5.4
36gb|AC148834.3| Pan troglodytes BAC clone CH251-4D23 from chromos... 40 5.4
37gb|AC174000.3| Pan troglodytes BAC clone CH251-2O15 from chromos... 40 5.4
38gb|AC093183.3| Homo sapiens chromosome 7 clone RP11-786I1, compl... 40 5.4
39gb|AC183494.1| Brassica oleracea Contig C, complete sequence 40 5.4
40gb|AC148313.3| Pan troglodytes BAC clone CH251-565C10 from chrom... 40 5.4
41gb|AF020782.1|AF020782 Homo sapiens chromosome 20 telomere-assoc... 40 5.4
42gb|AC073210.8| Homo sapiens BAC clone RP11-460N20 from 7, comple... 40 5.4
43gb|AC073135.3| Homo sapiens BAC clone RP11-694O4 from 7, complet... 40 5.4
44gb|AC115287.5| Homo sapiens chromosome 1 clone RP5-870L9, comple... 40 5.4
45dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
46gb|AC069287.7| Homo sapiens BAC clone RP11-304M2 from 11, comple... 40 5.4
47gb|AC133919.3| Homo sapiens chromosome 16 clone RP11-356C4, comp... 40 5.4
48gb|AC093752.2| Homo sapiens BAC clone RP11-33B1 from 4, complete... 40 5.4
49gb|AC146477.3| Pan troglodytes BAC clone CH251-514B8 from chromo... 40 5.4
50gb|AC018638.5|AC018638 Homo sapiens chromosome 7 clone RP11-274B... 40 5.4
51gb|AC138393.2| Homo sapiens chromosome 1 clone RP11-504P24, comp... 40 5.4
52dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
53gb|AC005627.2|AC005627 Homo sapiens PAC clone RP4-577P23 from 1,... 40 5.4
54gb|AF240597.1|AF240597 Homo sapiens clone 7ptelc11t7 sequence 40 5.4
55gb|AC147220.3| Mus musculus BAC clone RP23-51A20 from chromosome... 40 5.4
56dbj|AP005787.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
57dbj|AP005709.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
58gb|AF466202.2| Zea mays putative pol protein gene, partial cds; ... 40 5.4
59emb|BX005049.6| Zebrafish DNA sequence from clone DKEY-89O18 in ... 40 5.4
60emb|BX296533.9| Zebrafish DNA sequence from clone DKEY-54O1 in l... 40 5.4
61gb|AC131693.5| Mus musculus BAC clone RP23-391D10 from 14, compl... 40 5.4 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 238      caatcaacagctcaaaaggcgaattggttggtgaaaccctgattgcaaaggtgctga 294
                |||||||||||||||||||| | |  |||||||||  ||||||||||||||||||||
Sbjct: 30534414 caatcaacagctcaaaaggcaagtcagttggtgaaggcctgattgcaaaggtgctga 30534358



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 278      gattgcaaaggtgctgatgc 297
                ||||||||||||||||||||
Sbjct: 19206097 gattgcaaaggtgctgatgc 19206116
to top
>dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0036G09
          Length = 124118

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                      
Query: 238   caatcaacagctcaaaaggcgaattggttggtgaaaccctgattgcaaaggtgctga 294
             |||||||||||||||||||| | |  |||||||||  ||||||||||||||||||||
Sbjct: 17018 caatcaacagctcaaaaggcaagtcagttggtgaaggcctgattgcaaaggtgctga 16962
to top
>dbj|AK067563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111I12, full
            insert sequence
          Length = 1612

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 238  caatcaacagctcaaaaggcgaattggttggtgaaaccctgattgcaaaggtgctga 294
            |||||||||||||||||||| | |  |||||||||  ||||||||||||||||||||
Sbjct: 1180 caatcaacagctcaaaaggcaagtcagttggtgaaggcctgattgcaaaggtgctga 1124
to top
>gb|AC158568.6| Mus musculus chromosome 18, clone RP24-249D7, complete sequence
          Length = 151345

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 277    tgattgcaaaggtgctgatgcatcaag 303
              |||||||||||||||||||||| ||||
Sbjct: 128999 tgattgcaaaggtgctgatgcaacaag 129025
to top
>gb|AC117540.9| Mus musculus chromosome 18, clone RP23-131B4, complete sequence
          Length = 198854

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 277    tgattgcaaaggtgctgatgcatcaag 303
              |||||||||||||||||||||| ||||
Sbjct: 198239 tgattgcaaaggtgctgatgcaacaag 198265
to top
>gb|AC116860.15| Mus musculus chromosome 10, clone RP24-407B18, complete sequence
          Length = 193505

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 277   tgattgcaaaggtgctgatgca 298
             ||||||||||||||||||||||
Sbjct: 57391 tgattgcaaaggtgctgatgca 57370
to top
>gb|AC109308.8| Mus musculus chromosome 3, clone RP24-459K16, complete sequence
          Length = 133381

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 277    tgattgcaaaggtgctgatgc 297
              |||||||||||||||||||||
Sbjct: 105651 tgattgcaaaggtgctgatgc 105631
to top
>emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chromosome 10 Contains a
            novel gene (FLJ14374), a CDA11 protein (CDA11) pseudogene
            and two novel genes, complete sequence
          Length = 134242

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 78   gcaatcttataatcagaaagt 98
            |||||||||||||||||||||
Sbjct: 6653 gcaatcttataatcagaaagt 6673
to top
>gb|AF407521.1| Varanus rudicollis UMMZ 210506 16S ribosomal RNA gene, partial
            sequence; tRNA-Leu gene, complete sequence; NADH
            dehydrogenase subunit 1 (ND1) gene, complete cds;
            tRNA-Ile, tRNA-Gln, and tRNA-Met genes, complete
            sequence; NADH dehydrogenase subunit 2 (ND2) gene,
            complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and
            tRNA-Tyr genes, complete sequence; and cytochrome c
            oxidase subunit I (COI) gene, partial cds; mitochondrial
            genes for mitochondrial products
          Length = 2777

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 352  cctattcttgttatccctcct 372
            |||||||||||||||||||||
Sbjct: 2083 cctattcttgttatccctcct 2103
to top
>gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete sequence
          Length = 163823

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    tctttaatctactacatacag 71
             |||||||||||||||||||||
Sbjct: 52746 tctttaatctactacatacag 52726
to top
>gb|AC138200.10| Mus musculus chromosome 3, clone RP23-438J19, complete sequence
          Length = 183803

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 277   tgattgcaaaggtgctgatgc 297
             |||||||||||||||||||||
Sbjct: 38400 tgattgcaaaggtgctgatgc 38380
to top
>gb|AC147143.2| Pan troglodytes BAC clone CH251-267L18 from Y, complete sequence
          Length = 187629

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    agaaagtaacaaagacaaaa 111
             ||||||||||||||||||||
Sbjct: 81091 agaaagtaacaaagacaaaa 81110
to top
>gb|AC146018.3| Pan troglodytes BAC clone RP43-135A21 from 7, complete sequence
          Length = 177841

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    gttatacaaatatagaagaa 150
              ||||||||||||||||||||
Sbjct: 171581 gttatacaaatatagaagaa 171600
to top
>gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosome 18, complete
             sequence
          Length = 193184

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 83    cttataatcagaaagtaacaaagacaaa 110
             ||||||| |||||||||||| |||||||
Sbjct: 10939 cttataaccagaaagtaacacagacaaa 10966
to top
>gb|AC091464.8| Mus musculus chromosome 14, clone RP23-97N1, complete sequence
          Length = 237814

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    ttgtttcagtcctattcttg 361
              ||||||||||||||||||||
Sbjct: 231048 ttgtttcagtcctattcttg 231029
to top
>gb|AC147515.1| Pan troglodytes BAC clone CH251-558O8 from Y, complete sequence
          Length = 209207

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     agaaagtaacaaagacaaaa 111
              ||||||||||||||||||||
Sbjct: 123338 agaaagtaacaaagacaaaa 123319



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    agaaagtaacaaagacaaaa 111
             ||||||||||||||||||||
Sbjct: 21119 agaaagtaacaaagacaaaa 21138
to top
>gb|AC135115.5| Mus musculus BAC clone RP24-251K13 from chromosome 10, complete
             sequence
          Length = 178241

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    ttataatcagaaagtaacaa 103
             ||||||||||||||||||||
Sbjct: 27211 ttataatcagaaagtaacaa 27230
to top
>gb|AC111014.6| Mus musculus BAC clone RP24-371P8 from chromosome 10, complete sequence
          Length = 141953

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    ttataatcagaaagtaacaa 103
             ||||||||||||||||||||
Sbjct: 68490 ttataatcagaaagtaacaa 68471
to top
>gb|AC073107.7| Homo sapiens BAC clone RP11-479O9 from 7, complete sequence
          Length = 194178

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    gttatacaaatatagaagaa 150
              ||||||||||||||||||||
Sbjct: 145752 gttatacaaatatagaagaa 145733
to top
>gb|AC096582.1| Homo sapiens BAC clone RP11-638I8 from 7, complete sequence
          Length = 132122

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 22281 gttatacaaatatagaagaa 22262
to top
>gb|AC097646.2| Homo sapiens cosmid clone XXcos-2185C14 from 7, complete sequence
          Length = 42961

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 36147 gttatacaaatatagaagaa 36166
to top
>gb|AC139191.1| Pan troglodytes BAC clone RP43-32G19 from Y, complete sequence
          Length = 170201

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     agaaagtaacaaagacaaaa 111
              ||||||||||||||||||||
Sbjct: 159795 agaaagtaacaaagacaaaa 159776



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    agaaagtaacaaagacaaaa 111
             ||||||||||||||||||||
Sbjct: 41788 agaaagtaacaaagacaaaa 41807
to top
>gb|AC142301.1| Pan troglodytes BAC clone RP43-127N2 from Y, complete sequence
          Length = 108043

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   agaaagtaacaaagacaaaa 111
            ||||||||||||||||||||
Sbjct: 6564 agaaagtaacaaagacaaaa 6583
to top
>emb|AL954642.9| Human DNA sequence from clone RP11-885N19 on chromosome 9 Contains the 3'
              end of the CACNA1B gene for alpha 1B subunit of L type
              voltage-dependent calcium channel, a pseudogene similar to
              part of interleukin 9 receptor (ILR9), a tubulin, beta
              polypeptide 4, member Q (TUBB4Q) pseudogene and five CpG
              islands, complete sequence
          Length = 154372

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    gttatacaaatatagaagaa 150
              ||||||||||||||||||||
Sbjct: 134649 gttatacaaatatagaagaa 134630
to top
>emb|AL669831.13| Human DNA sequence from clone RP11-206L10 on chromosome 1 Contains
             thirteen novel genes, a novel pseudogene, a novel gene
             similar to the F-box only protein 25 gene(FBXO25), a novel
             pseudogene similar to the beta-tubulin family and a CpG
             island, complete sequence
          Length = 179567

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 77105 gttatacaaatatagaagaa 77124
to top
>emb|AL627309.15| Human DNA sequence from clone RP11-34P13 on chromosome 1 Contains a
              pseudogene similar to part of DEAD/H box polypeptide 11
              (CHL1-like helicase homolog, S. cerevisiae) (DDX11), two
              novel pseudogenes, nine novel genes, two novel proteins
              similar to the olfactory receptor family, a capicua homolog
              (Drosophila) (CIC) pseudogene and two CpG islands, complete
              sequence
          Length = 166904

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    gttatacaaatatagaagaa 150
              ||||||||||||||||||||
Sbjct: 163711 gttatacaaatatagaagaa 163730
to top
>emb|AL606534.15| Human DNA sequence from clone RP11-261C10 on chromosome 1 Contains four
              novel genes, the 5' end of a novel gene and the 3' end of
              the gene for KARP-1-binding protein (KAB), complete
              sequence
          Length = 183541

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    gttatacaaatatagaagaa 150
              ||||||||||||||||||||
Sbjct: 111768 gttatacaaatatagaagaa 111787
to top
>emb|AL592148.7| Human DNA sequence from clone RP11-378J18 on chromosome 1 Contains the
             gene for a novel protein (FLJ13840), the TAF1A gene for
             TATA box binding protein (TBP)-associated factor, RNA
             polymerase I, A, 48kDa, two novel genes, the gene for
             C219-reactive peptide (FLJ39207), the 3' of the gene for a
             novel protein (FLJ12806) and a CpG island, complete
             sequence
          Length = 194034

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 24445 gttatacaaatatagaagaa 24464
to top
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    aagccgtagcaggggttgcc 320
              ||||||||||||||||||||
Sbjct: 986155 aagccgtagcaggggttgcc 986174
to top
>emb|AL162718.15| Human DNA sequence from clone RP11-274H24 on chromosome 6, complete
             sequence
          Length = 178872

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    cttataatcagaaagtaaca 102
             ||||||||||||||||||||
Sbjct: 82215 cttataatcagaaagtaaca 82196
to top
>emb|AL133216.10| Human DNA sequence from clone RP11-291L22 on chromosome 10 Contains the
             3' end of a gene for a novel protein similar to
             17-beta-hydroxysteroid dehydrogenase type 7 (HSD17B7), the
             gene for a novel protein similar to CDC10 cell division
             cycle 10, homolog (S. cerevisiae) (CDC10), a novel gene, a
             novel gene containing FLJ14186, a capicua homolog
             (Drosophila) (CIC) pseudogene and a CpG island, complete
             sequence
          Length = 166835

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 44197 gttatacaaatatagaagaa 44178
to top
>gb|AC091558.7| Homo sapiens chromosome 8, clone RP11-745D6, complete sequence
          Length = 115093

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   ttcagtcctattcttgttat 365
             ||||||||||||||||||||
Sbjct: 67015 ttcagtcctattcttgttat 67034
to top
>gb|AC016588.9| Homo sapiens chromosome 19 clone CTD-3113P16, complete sequence
          Length = 144578

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 131  gttatacaaatatagaagaa 150
            ||||||||||||||||||||
Sbjct: 7533 gttatacaaatatagaagaa 7552
to top
>gb|AC182391.3| Pan troglodytes BAC clone CH251-510H16 from chromosome 1, complete
              sequence
          Length = 188995

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    gttatacaaatatagaagaa 150
              ||||||||||||||||||||
Sbjct: 149171 gttatacaaatatagaagaa 149190
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 92       agaaagtaacaaagacaaaa 111
                ||||||||||||||||||||
Sbjct: 11327127 agaaagtaacaaagacaaaa 11327108



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 92       agaaagtaacaaagacaaaa 111
                ||||||||||||||||||||
Sbjct: 11224908 agaaagtaacaaagacaaaa 11224927



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 92      agaaagtaacaaagacaaaa 111
               ||||||||||||||||||||
Sbjct: 3428539 agaaagtaacaaagacaaaa 3428520



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 92      agaaagtaacaaagacaaaa 111
               ||||||||||||||||||||
Sbjct: 3256760 agaaagtaacaaagacaaaa 3256779
to top
>gb|AC148834.3| Pan troglodytes BAC clone CH251-4D23 from chromosome 7, complete
             sequence
          Length = 192312

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 49421 gttatacaaatatagaagaa 49402
to top
>gb|AC174000.3| Pan troglodytes BAC clone CH251-2O15 from chromosome 7, complete
             sequence
          Length = 161527

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 71931 gttatacaaatatagaagaa 71950
to top
>gb|AC093183.3| Homo sapiens chromosome 7 clone RP11-786I1, complete sequence
          Length = 174133

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 65147 gttatacaaatatagaagaa 65128
to top
>gb|AC183494.1| Brassica oleracea Contig C, complete sequence
          Length = 285752

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     ataatcagaaagtaacaaag 105
              ||||||||||||||||||||
Sbjct: 255369 ataatcagaaagtaacaaag 255350
to top
>gb|AC148313.3| Pan troglodytes BAC clone CH251-565C10 from chromosome 7, complete
             sequence
          Length = 183205

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 33708 gttatacaaatatagaagaa 33727
to top
>gb|AF020782.1|AF020782 Homo sapiens chromosome 20 telomere-associated repeat region
          Length = 984

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 131 gttatacaaatatagaagaa 150
           ||||||||||||||||||||
Sbjct: 39  gttatacaaatatagaagaa 20
to top
>gb|AC073210.8| Homo sapiens BAC clone RP11-460N20 from 7, complete sequence
          Length = 203396

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    gttatacaaatatagaagaa 150
              ||||||||||||||||||||
Sbjct: 147695 gttatacaaatatagaagaa 147676
to top
>gb|AC073135.3| Homo sapiens BAC clone RP11-694O4 from 7, complete sequence
          Length = 190016

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 55167 gttatacaaatatagaagaa 55186
to top
>gb|AC115287.5| Homo sapiens chromosome 1 clone RP5-870L9, complete sequence
          Length = 99182

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 69364 gttatacaaatatagaagaa 69383
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
              complete sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    gattgcaaaggtgctgatgc 297
              ||||||||||||||||||||
Sbjct: 845196 gattgcaaaggtgctgatgc 845215
to top
>gb|AC069287.7| Homo sapiens BAC clone RP11-304M2 from 11, complete sequence
          Length = 199487

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 90074 gttatacaaatatagaagaa 90055
to top
>gb|AC133919.3| Homo sapiens chromosome 16 clone RP11-356C4, complete sequence
          Length = 210446

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    gttatacaaatatagaagaa 150
              ||||||||||||||||||||
Sbjct: 152694 gttatacaaatatagaagaa 152675
to top
>gb|AC093752.2| Homo sapiens BAC clone RP11-33B1 from 4, complete sequence
          Length = 130879

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 51914 gttatacaaatatagaagaa 51933
to top
>gb|AC146477.3| Pan troglodytes BAC clone CH251-514B8 from chromosome y, complete
             sequence
          Length = 170833

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    agaaagtaacaaagacaaaa 111
             ||||||||||||||||||||
Sbjct: 86009 agaaagtaacaaagacaaaa 86028
to top
>gb|AC018638.5|AC018638 Homo sapiens chromosome 7 clone RP11-274B21, complete sequence
          Length = 176875

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    gttatacaaatatagaagaa 150
              ||||||||||||||||||||
Sbjct: 170623 gttatacaaatatagaagaa 170642
to top
>gb|AC138393.2| Homo sapiens chromosome 1 clone RP11-504P24, complete sequence
          Length = 184644

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   gttatacaaatatagaagaa 150
             ||||||||||||||||||||
Sbjct: 91167 gttatacaaatatagaagaa 91186
to top
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1619_F12
          Length = 133028

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   gattgcaaaggtgctgatgc 297
             ||||||||||||||||||||
Sbjct: 25718 gattgcaaaggtgctgatgc 25737
to top
>gb|AC005627.2|AC005627 Homo sapiens PAC clone RP4-577P23 from 1, complete sequence
          Length = 137304

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 131  gttatacaaatatagaagaa 150
            ||||||||||||||||||||
Sbjct: 3762 gttatacaaatatagaagaa 3743
to top
>gb|AF240597.1|AF240597 Homo sapiens clone 7ptelc11t7 sequence
          Length = 474

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 131 gttatacaaatatagaagaa 150
           ||||||||||||||||||||
Sbjct: 324 gttatacaaatatagaagaa 305
to top
>gb|AC147220.3| Mus musculus BAC clone RP23-51A20 from chromosome 18, complete sequence
          Length = 208705

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 83    cttataatcagaaagtaacaaagacaaa 110
             ||||||| |||||||||||| |||||||
Sbjct: 63339 cttataaccagaaagtaacacagacaaa 63312
to top
>dbj|AP005787.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0501E09
          Length = 150604

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    gattgcaaaggtgctgatgc 297
              ||||||||||||||||||||
Sbjct: 130535 gattgcaaaggtgctgatgc 130554
to top
>dbj|AP005709.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0646B04
          Length = 178896

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 278  gattgcaaaggtgctgatgc 297
            ||||||||||||||||||||
Sbjct: 9323 gattgcaaaggtgctgatgc 9342
to top
>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol
             precursor -orf2, putative Fourf gag/pol protein, putative
             NADP-dependent malic enzyme, putative argonaute protein,
             putative pinhead protein, putative pol protein, putative
             gag protein, putative TNP2, r1-B73 proteins, putative
             genetic modifier, putative S-receptor kinase, putative
             aldose reductase-related protein, putative glutathione
             peroxidase, putative glycerol 3-phosphate permease,
             putative response regulator, and putative 4-coumarate-CoA
             ligase-like protein genes, complete cds
          Length = 290350

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    tttctttaatctactacata 68
             ||||||||||||||||||||
Sbjct: 88756 tttctttaatctactacata 88737



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    tttctttaatctactacata 68
             ||||||||||||||||||||
Sbjct: 79983 tttctttaatctactacata 79964
to top
>emb|BX005049.6| Zebrafish DNA sequence from clone DKEY-89O18 in linkage group 24,
              complete sequence
          Length = 251421

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    aagacaaaacgttgagattg 122
              ||||||||||||||||||||
Sbjct: 162579 aagacaaaacgttgagattg 162560
to top
>emb|BX296533.9| Zebrafish DNA sequence from clone DKEY-54O1 in linkage group 5, complete
              sequence
          Length = 200047

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    aagacaaaacgttgagattg 122
              ||||||||||||||||||||
Sbjct: 106211 aagacaaaacgttgagattg 106192
to top
>gb|AC131693.5| Mus musculus BAC clone RP23-391D10 from 14, complete sequence
          Length = 220202

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  ttgtttcagtcctattcttg 361
            ||||||||||||||||||||
Sbjct: 5593 ttgtttcagtcctattcttg 5574


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,422,029
Number of Sequences: 3902068
Number of extensions: 4422029
Number of successful extensions: 61594
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61409
Number of HSP's gapped (non-prelim): 185
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top