>RPOC_ENTFA (Q82Z41) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1217

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +1

Query: 22  TAQVHTTDVLQAMNASNREHTWISSKLIRYI*ETRNPCFSLQ-RKSLWEHLGEGFGTSTF 198
           T  +   D+L+A  AS  + +W+   +I  I     P   L+  +     L + +     
Sbjct: 204 TRAIRRLDILEAFRASGNQPSWMVMDVIPVIPPDLRPMVQLEGGRFATSDLNDLYRRVIN 263

Query: 199 FSNRFNKTKDPEQPSIIPKNH*R 267
            +NR  +  D   PSII +N  R
Sbjct: 264 RNNRLKRLLDLNAPSIIVQNEKR 286

>Y260_MYCGE (P47502) Hypothetical lipoprotein MG260 precursor|
          Length = 765

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/57 (22%), Positives = 32/57 (56%)
 Frame = +2

Query: 92  AQSSSATSKRRGILASVFSESHSGNIWEKVLVPPHSSATDSTKQKIQSSHQSSLKIT 262
           A  SS +++++G L  + ++S +  +W+ +     +++ ++TK++ Q    SS   T
Sbjct: 187 ATVSSRSAEKKGTL-EIANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSSSSST 242

>NIFE_METMP (P71528) Nitrogenase iron-molybdenum cofactor biosynthesis protein|
           nifE
          Length = 480

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 167 IWEKVLVPPHSSAT-DSTKQKIQSSHQSSLKITE 265
           ++EK+ V  H++ T DST  K+ S+H+S L I +
Sbjct: 244 LYEKMGVKVHTAITGDSTVAKVASAHRSKLNIVQ 277

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +3

Query: 54   SHECKQQRTYMDKLKA----HPLHLRDAESLLQSSAKVTLGTSGRRFWYLHILQQQIQQN 221
            SH  +Q  TYM  ++A     PLH      + QS     L   GR        QQQ+QQ 
Sbjct: 3633 SHHPQQPGTYMVGIRAPSPHSPLH-SPGRGVAQSRLVGQLSPVGRPMVSQPSPQQQVQQT 3691

Query: 222  KRSRAAINHP 251
            ++  A I  P
Sbjct: 3692 QQQHALITSP 3701

>MASTL_HUMAN (Q96GX5) Microtubule-associated serine/threonine-protein|
           kinase-like (EC 2.7.11.1)
          Length = 879

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 98  SSSATSKRRGILASVFSESHSGNIWEK 178
           +SSA+S+    ++SV SE HS   WEK
Sbjct: 299 TSSASSQSHTFISSVESECHSSPKWEK 325

>C1S_HUMAN (P09871) Complement C1s subcomponent precursor (EC 3.4.21.42) (C1|
           esterase) [Contains: Complement C1s subcomponent heavy
           chain; Complement C1s subcomponent light chain]
          Length = 688

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 236 CSGS-FVXXXXXLKNVEVPKPSPRCSQSDFR*RLKQGFRV 120
           CSG  F      + +   PKP P  S+ +++ RL++GF+V
Sbjct: 175 CSGDVFTALIGEIASPNYPKPYPENSRCEYQIRLEKGFQV 214


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,779,715
Number of Sequences: 219361
Number of extensions: 604340
Number of successful extensions: 1757
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1757
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)