| Clone Name | rbast72f12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_449862.1| Candida glabrata CBS138 hypothetical protein (CAGL0M11968g) partial mRNA Length = 2523 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Plus Query: 199 ttcagcaacagattcaacaaaacaaaagat 228 |||||| |||||||||||| |||||||||| Sbjct: 950 ttcagctacagattcaacagaacaaaagat 979
>gb|BC062466.1| Homo sapiens cDNA clone IMAGE:6178887, partial cds Length = 1572 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 195 attcttcagcaacagattcaacaaaa 220 |||||||||||||||| ||||||||| Sbjct: 930 attcttcagcaacagactcaacaaaa 955
>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence Length = 1400893 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Plus Query: 199 ttcagcaacagattcaacaaaacaaaagat 228 |||||| |||||||||||| |||||||||| Sbjct: 1185758 ttcagctacagattcaacagaacaaaagat 1185787
>gb|AC113373.2| Homo sapiens chromosome 5 clone RP11-20L22, complete sequence Length = 104135 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 195 attcttcagcaacagattcaacaaaa 220 |||||||||||||||| ||||||||| Sbjct: 90773 attcttcagcaacagactcaacaaaa 90798
>gb|AC010250.7| Homo sapiens chromosome 5 clone CTC-425H14, complete sequence Length = 157061 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 195 attcttcagcaacagattcaacaaaa 220 |||||||||||||||| ||||||||| Sbjct: 102290 attcttcagcaacagactcaacaaaa 102265
>gb|AC152174.15| Gasterosteus aculeatus clone ch213-202d23, complete sequence Length = 174464 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 gaaagtcactctgggaacatc 169 ||||||||||||||||||||| Sbjct: 107372 gaaagtcactctgggaacatc 107392
>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold Length = 470930 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ttacaagccatgaatgcaagcaaca 73 ||||||||||| ||||||||||||| Sbjct: 41633 ttacaagccataaatgcaagcaaca 41609
>gb|AC026475.6|AC026475 Homo sapiens chromosome 16 clone RP11-71H23, complete sequence Length = 159611 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Minus Query: 56 ccatgaatgcaagcaacagagaaca 80 |||||||||||||||||||| |||| Sbjct: 26377 ccatgaatgcaagcaacagaaaaca 26353
>gb|AC016647.7| Homo sapiens chromosome 16 clone RP11-89G14, complete sequence Length = 160358 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccatgaatgcaagcaacagagaaca 80 |||||||||||||||||||| |||| Sbjct: 63947 ccatgaatgcaagcaacagaaaaca 63971
>gb|AC154377.4| Mus musculus BAC clone RP23-63F23 from chromosome 14, complete sequence Length = 193561 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 ggaatccttgcttcagtcttc 145 ||||||||||||||||||||| Sbjct: 191387 ggaatccttgcttcagtcttc 191407
>ref|NM_127194.2| Arabidopsis thaliana DNA binding / transcription factor AT2G16400 mRNA, complete cds Length = 2126 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 agattcaacaaaacaaaagatcca 231 |||||||| ||||||||||||||| Sbjct: 289 agattcaagaaaacaaaagatcca 266
>gb|AC123984.14| Mus musculus chromosome 8, clone RP23-78H21, complete sequence Length = 256723 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ccaaaagcattgattctaca 24 |||||||||||||||||||| Sbjct: 106447 ccaaaagcattgattctaca 106466
>gb|AC142321.1| Pan troglodytes BAC clone RP43-63G10 from 7, complete sequence Length = 157283 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 acattcttcagcaacagatt 212 |||||||||||||||||||| Sbjct: 143463 acattcttcagcaacagatt 143444
>emb|AL136114.14| Human DNA sequence from clone RP11-63B19 on chromosome 1, complete sequence Length = 127892 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 aaagcattgattctacagca 27 |||||||||||||||||||| Sbjct: 27795 aaagcattgattctacagca 27776
>emb|AL008713.1|HS93C23 Human DNA sequence from clone RP1-93C23 on chromosome Xq27 Contains a steroid-5-alpha-reductase alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) (SRD5A1) pseudogene, complete sequence Length = 72245 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 tcaacaaaacaaaagatcca 231 |||||||||||||||||||| Sbjct: 30300 tcaacaaaacaaaagatcca 30281
>gb|AC007047.7| Arabidopsis thaliana chromosome 2 clone F16F14 map mi398, complete sequence Length = 114418 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 agattcaacaaaacaaaagatcca 231 |||||||| ||||||||||||||| Sbjct: 42186 agattcaagaaaacaaaagatcca 42163
>gb|AY056796.1| Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds Length = 2126 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 agattcaacaaaacaaaagatcca 231 |||||||| ||||||||||||||| Sbjct: 290 agattcaagaaaacaaaagatcca 267
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ataccaaaagcattgattct 21 |||||||||||||||||||| Sbjct: 37944308 ataccaaaagcattgattct 37944289
>emb|BX820985.1|CNS0AACQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZE03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2091 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 agattcaacaaaacaaaagatcca 231 |||||||| ||||||||||||||| Sbjct: 269 agattcaagaaaacaaaagatcca 246
>emb|BX819815.1|CNS0A84F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS30ZD10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2098 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 agattcaacaaaacaaaagatcca 231 |||||||| ||||||||||||||| Sbjct: 273 agattcaagaaaacaaaagatcca 250
>dbj|AB210499.1| Ciona intestinalis Ci-HsignallingT1 mRNA, complete cds, clone: cima851b10 Length = 2529 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 acagattcaacaaaacaaaa 225 |||||||||||||||||||| Sbjct: 2025 acagattcaacaaaacaaaa 2006
>gb|AC006368.2| Homo sapiens BAC clone RP11-252C12 from 2, complete sequence Length = 171089 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 acatacatggataagctcaa 97 |||||||||||||||||||| Sbjct: 64838 acatacatggataagctcaa 64819
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A10 Length = 137348 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ataccaaaagcattgattct 21 |||||||||||||||||||| Sbjct: 25252 ataccaaaagcattgattct 25233
>dbj|AK115170.1| Ciona intestinalis cDNA, clone:cieg036n18, full insert sequence Length = 2070 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 acagattcaacaaaacaaaa 225 |||||||||||||||||||| Sbjct: 2025 acagattcaacaaaacaaaa 2006
>emb|BX005138.5| Mouse DNA sequence from clone RP24-104L2 on chromosome 2, complete sequence Length = 96543 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 tcagcaacagattcaacaaaacaa 223 ||||||||||| |||||||||||| Sbjct: 10948 tcagcaacagagtcaacaaaacaa 10971
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0648C09 Length = 107522 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ataccaaaagcattgattct 21 |||||||||||||||||||| Sbjct: 40584 ataccaaaagcattgattct 40565 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,560,428 Number of Sequences: 3902068 Number of extensions: 3560428 Number of successful extensions: 65472 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65405 Number of HSP's gapped (non-prelim): 67 length of query: 267 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 245 effective length of database: 17,147,199,772 effective search space: 4201063944140 effective search space used: 4201063944140 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)