ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast72f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_449862.1| Candida glabrata CBS138 hypothetical protein (C... 44 0.22
2gb|BC062466.1| Homo sapiens cDNA clone IMAGE:6178887, partial cds 44 0.22
3emb|CR380959.1| Candida glabrata strain CBS138 chromosome M comp... 44 0.22
4gb|AC113373.2| Homo sapiens chromosome 5 clone RP11-20L22, compl... 44 0.22
5gb|AC010250.7| Homo sapiens chromosome 5 clone CTC-425H14, compl... 44 0.22
6gb|AC152174.15| Gasterosteus aculeatus clone ch213-202d23, compl... 42 0.88
7gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold 42 0.88
8gb|AC026475.6|AC026475 Homo sapiens chromosome 16 clone RP11-71H... 42 0.88
9gb|AC016647.7| Homo sapiens chromosome 16 clone RP11-89G14, comp... 42 0.88
10gb|AC154377.4| Mus musculus BAC clone RP23-63F23 from chromosome... 42 0.88
11ref|NM_127194.2| Arabidopsis thaliana DNA binding / transcriptio... 40 3.5
12gb|AC123984.14| Mus musculus chromosome 8, clone RP23-78H21, com... 40 3.5
13gb|AC142321.1| Pan troglodytes BAC clone RP43-63G10 from 7, comp... 40 3.5
14emb|AL136114.14| Human DNA sequence from clone RP11-63B19 on chr... 40 3.5
15emb|AL008713.1|HS93C23 Human DNA sequence from clone RP1-93C23 o... 40 3.5
16gb|AC007047.7| Arabidopsis thaliana chromosome 2 clone F16F14 ma... 40 3.5
17gb|AY056796.1| Arabidopsis thaliana At2g16400/F16F14.10 mRNA, co... 40 3.5
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
19emb|BX820985.1|CNS0AACQ Arabidopsis thaliana Full-length cDNA Co... 40 3.5
20emb|BX819815.1|CNS0A84F Arabidopsis thaliana Full-length cDNA Co... 40 3.5
21dbj|AB210499.1| Ciona intestinalis Ci-HsignallingT1 mRNA, comple... 40 3.5
22gb|AC006368.2| Homo sapiens BAC clone RP11-252C12 from 2, comple... 40 3.5
23dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
24dbj|AK115170.1| Ciona intestinalis cDNA, clone:cieg036n18, full ... 40 3.5
25emb|BX005138.5| Mouse DNA sequence from clone RP24-104L2 on chro... 40 3.5
26dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5

>ref|XM_449862.1| Candida glabrata CBS138 hypothetical protein (CAGL0M11968g) partial
           mRNA
          Length = 2523

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 199 ttcagcaacagattcaacaaaacaaaagat 228
           |||||| |||||||||||| ||||||||||
Sbjct: 950 ttcagctacagattcaacagaacaaaagat 979



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>gb|BC062466.1| Homo sapiens cDNA clone IMAGE:6178887, partial cds
          Length = 1572

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 195 attcttcagcaacagattcaacaaaa 220
           |||||||||||||||| |||||||||
Sbjct: 930 attcttcagcaacagactcaacaaaa 955



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>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 199     ttcagcaacagattcaacaaaacaaaagat 228
               |||||| |||||||||||| ||||||||||
Sbjct: 1185758 ttcagctacagattcaacagaacaaaagat 1185787



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>gb|AC113373.2| Homo sapiens chromosome 5 clone RP11-20L22, complete sequence
          Length = 104135

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 195   attcttcagcaacagattcaacaaaa 220
             |||||||||||||||| |||||||||
Sbjct: 90773 attcttcagcaacagactcaacaaaa 90798



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>gb|AC010250.7| Homo sapiens chromosome 5 clone CTC-425H14, complete sequence
          Length = 157061

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 195    attcttcagcaacagattcaacaaaa 220
              |||||||||||||||| |||||||||
Sbjct: 102290 attcttcagcaacagactcaacaaaa 102265



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>gb|AC152174.15| Gasterosteus aculeatus clone ch213-202d23, complete sequence
          Length = 174464

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 149    gaaagtcactctgggaacatc 169
              |||||||||||||||||||||
Sbjct: 107372 gaaagtcactctgggaacatc 107392



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>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold
          Length = 470930

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 49    ttacaagccatgaatgcaagcaaca 73
             ||||||||||| |||||||||||||
Sbjct: 41633 ttacaagccataaatgcaagcaaca 41609



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>gb|AC026475.6|AC026475 Homo sapiens chromosome 16 clone RP11-71H23, complete sequence
          Length = 159611

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 56    ccatgaatgcaagcaacagagaaca 80
             |||||||||||||||||||| ||||
Sbjct: 26377 ccatgaatgcaagcaacagaaaaca 26353



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>gb|AC016647.7| Homo sapiens chromosome 16 clone RP11-89G14, complete sequence
          Length = 160358

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 56    ccatgaatgcaagcaacagagaaca 80
             |||||||||||||||||||| ||||
Sbjct: 63947 ccatgaatgcaagcaacagaaaaca 63971



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>gb|AC154377.4| Mus musculus BAC clone RP23-63F23 from chromosome 14, complete sequence
          Length = 193561

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 125    ggaatccttgcttcagtcttc 145
              |||||||||||||||||||||
Sbjct: 191387 ggaatccttgcttcagtcttc 191407



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>ref|NM_127194.2| Arabidopsis thaliana DNA binding / transcription factor AT2G16400
           mRNA, complete cds
          Length = 2126

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 208 agattcaacaaaacaaaagatcca 231
           |||||||| |||||||||||||||
Sbjct: 289 agattcaagaaaacaaaagatcca 266



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>gb|AC123984.14| Mus musculus chromosome 8, clone RP23-78H21, complete sequence
          Length = 256723

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      ccaaaagcattgattctaca 24
              ||||||||||||||||||||
Sbjct: 106447 ccaaaagcattgattctaca 106466



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>gb|AC142321.1| Pan troglodytes BAC clone RP43-63G10 from 7, complete sequence
          Length = 157283

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    acattcttcagcaacagatt 212
              ||||||||||||||||||||
Sbjct: 143463 acattcttcagcaacagatt 143444



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>emb|AL136114.14| Human DNA sequence from clone RP11-63B19 on chromosome 1, complete
             sequence
          Length = 127892

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     aaagcattgattctacagca 27
             ||||||||||||||||||||
Sbjct: 27795 aaagcattgattctacagca 27776



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>emb|AL008713.1|HS93C23 Human DNA sequence from clone RP1-93C23 on chromosome Xq27 Contains a
             steroid-5-alpha-reductase alpha polypeptide 1 (3-oxo-5
             alpha-steroid delta 4-dehydrogenase alpha 1) (SRD5A1)
             pseudogene, complete sequence
          Length = 72245

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tcaacaaaacaaaagatcca 231
             ||||||||||||||||||||
Sbjct: 30300 tcaacaaaacaaaagatcca 30281



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>gb|AC007047.7| Arabidopsis thaliana chromosome 2 clone F16F14 map mi398, complete
             sequence
          Length = 114418

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   agattcaacaaaacaaaagatcca 231
             |||||||| |||||||||||||||
Sbjct: 42186 agattcaagaaaacaaaagatcca 42163



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>gb|AY056796.1| Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds
          Length = 2126

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 208 agattcaacaaaacaaaagatcca 231
           |||||||| |||||||||||||||
Sbjct: 290 agattcaagaaaacaaaagatcca 267



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 2        ataccaaaagcattgattct 21
                ||||||||||||||||||||
Sbjct: 37944308 ataccaaaagcattgattct 37944289



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>emb|BX820985.1|CNS0AACQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH89ZE03 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2091

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 208 agattcaacaaaacaaaagatcca 231
           |||||||| |||||||||||||||
Sbjct: 269 agattcaagaaaacaaaagatcca 246



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>emb|BX819815.1|CNS0A84F Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS30ZD10 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2098

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 208 agattcaacaaaacaaaagatcca 231
           |||||||| |||||||||||||||
Sbjct: 273 agattcaagaaaacaaaagatcca 250



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>dbj|AB210499.1| Ciona intestinalis Ci-HsignallingT1 mRNA, complete cds, clone:
            cima851b10
          Length = 2529

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 206  acagattcaacaaaacaaaa 225
            ||||||||||||||||||||
Sbjct: 2025 acagattcaacaaaacaaaa 2006



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>gb|AC006368.2| Homo sapiens BAC clone RP11-252C12 from 2, complete sequence
          Length = 171089

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    acatacatggataagctcaa 97
             ||||||||||||||||||||
Sbjct: 64838 acatacatggataagctcaa 64819



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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A10
          Length = 137348

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     ataccaaaagcattgattct 21
             ||||||||||||||||||||
Sbjct: 25252 ataccaaaagcattgattct 25233



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>dbj|AK115170.1| Ciona intestinalis cDNA, clone:cieg036n18, full insert sequence
          Length = 2070

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 206  acagattcaacaaaacaaaa 225
            ||||||||||||||||||||
Sbjct: 2025 acagattcaacaaaacaaaa 2006



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>emb|BX005138.5| Mouse DNA sequence from clone RP24-104L2 on chromosome 2, complete
             sequence
          Length = 96543

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 200   tcagcaacagattcaacaaaacaa 223
             ||||||||||| ||||||||||||
Sbjct: 10948 tcagcaacagagtcaacaaaacaa 10971



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>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0648C09
          Length = 107522

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     ataccaaaagcattgattct 21
             ||||||||||||||||||||
Sbjct: 40584 ataccaaaagcattgattct 40565


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,560,428
Number of Sequences: 3902068
Number of extensions: 3560428
Number of successful extensions: 65472
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65405
Number of HSP's gapped (non-prelim): 67
length of query: 267
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 245
effective length of database: 17,147,199,772
effective search space: 4201063944140
effective search space used: 4201063944140
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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