ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast72b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1THI3_SCHPO (P36597) Pyrimidine precursor biosynthesis enzyme thi... 29 2.4
2MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 28 4.1
3CCMA2_PSEAE (Q8GQ92) Cytochrome c biogenesis ATP-binding export ... 28 5.4
4ADO_RABIT (P80456) Aldehyde oxidase (EC 1.2.3.1) (Retinal oxidase) 28 7.0
5KIP1_YEAST (P28742) Kinesin-like protein KIP1 (Chromosome instab... 28 7.0
6NMT1_UROFA (O00057) Protein NMT1 homolog (Planta-induced rust pr... 27 9.2

>THI3_SCHPO (P36597) Pyrimidine precursor biosynthesis enzyme thi3 (No message|
           in thiamine protein 1)
          Length = 346

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 58  GCCCYCMCLYIYH 20
           GCCC+C  LYI H
Sbjct: 193 GCCCFCTILYIAH 205



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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 272  SPSISPGTTLLTPKYNPTAKD*RLTEATFVQAAAMG 379
            +PS +PGTT + P+   TA     T +T   ++A+G
Sbjct: 3904 NPSSTPGTTPIPPELTTTATTPAATSSTVTPSSALG 3939



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 272  SPSISPGTTLLTPKYNPTAKD*RLTEATFVQAAAMG 379
            +PS +PGTT + P    TA     T +T   ++A+G
Sbjct: 3375 NPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALG 3410



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 272  SPSISPGTTLLTPKYNPTAKD*RLTEATFVQAAAMG 379
            +PS +PGTT + P    TA     T +T   ++A+G
Sbjct: 2148 NPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALG 2183



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>CCMA2_PSEAE (Q8GQ92) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 203

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 305 SVELFQERWMGKERGRPHAIRGGEIVLSSPQEI 207
           +++ F  RW+G+   R H  RGG +VL+S QE+
Sbjct: 160 ALDQFGARWLGELIHR-HQSRGGMVVLTSHQEL 191



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>ADO_RABIT (P80456) Aldehyde oxidase (EC 1.2.3.1) (Retinal oxidase)|
          Length = 1334

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 218 PQEIMAGIHAVYYY*FEFVIMSRRVVTYGTKQTLFVIVIAFCRGKEGTGKNKVR 57
           PQEI+A +H  Y   +EFV+  R+      KQ    IV +  R   G G   +R
Sbjct: 407 PQEILASVHIPYSRKWEFVLAFRQA---QRKQNALAIVNSGMRVFFGEGDGIIR 457



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>KIP1_YEAST (P28742) Kinesin-like protein KIP1 (Chromosome instability protein|
           9)
          Length = 1111

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 212 PGGNSRQFHHLVLHVAFHAPSPSISPGTTLLTP 310
           P   + QF         HAPSPS+S G   LTP
Sbjct: 7   PNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTP 39



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>NMT1_UROFA (O00057) Protein NMT1 homolog (Planta-induced rust protein 1)|
          Length = 341

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 58  GCCCYCMCLYIYHQ 17
           GCCC+C  LYI ++
Sbjct: 194 GCCCFCSILYIANE 207


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,152,715
Number of Sequences: 219361
Number of extensions: 1280657
Number of successful extensions: 2976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2975
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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