ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast72a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UPPS_STRA5 (Q8DXD5) Undecaprenyl pyrophosphate synthetase (EC 2.... 31 1.3
2UPPS_STRA3 (Q8E359) Undecaprenyl pyrophosphate synthetase (EC 2.... 31 1.3
3LOXL4_BOVIN (Q8MJ24) Lysyl oxidase homolog 4 precursor (EC 1.4.3... 28 6.4
4LOXL4_HUMAN (Q96JB6) Lysyl oxidase homolog 4 precursor (EC 1.4.3... 28 6.4
5LOXL4_MOUSE (Q924C6) Lysyl oxidase homolog 4 precursor (EC 1.4.3... 28 8.3

>UPPS_STRA5 (Q8DXD5) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 250

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 186 LFCRSDSALLISSLLPWHPCNRHHHFVAVTSYDRLMDE*NEVIRDYHMPH 37
           L  R+   L +S+ LPW       +F  V   D   DE ++ I DY+  H
Sbjct: 195 LIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRH 244



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>UPPS_STRA3 (Q8E359) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 250

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 186 LFCRSDSALLISSLLPWHPCNRHHHFVAVTSYDRLMDE*NEVIRDYHMPH 37
           L  R+   L +S+ LPW       +F  V   D   DE ++ I DY+  H
Sbjct: 195 LIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRH 244



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>LOXL4_BOVIN (Q8MJ24) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 4)
          Length = 757

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 138 WHPCNRHHHFVAV-TSYDRL 82
           WH C+RH+H + V T YD L
Sbjct: 608 WHQCHRHYHSIEVFTHYDLL 627



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>LOXL4_HUMAN (Q96JB6) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 4) (Lysyl oxidase-related protein
           C)
          Length = 756

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 138 WHPCNRHHHFVAV-TSYDRL 82
           WH C+RH+H + V T YD L
Sbjct: 607 WHQCHRHYHSIEVFTHYDLL 626



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>LOXL4_MOUSE (Q924C6) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 4) (Lysyl oxidase-related protein
           C)
          Length = 757

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 138 WHPCNRHHHFVAV-TSYDRL 82
           WH C+RH+H + V T YD L
Sbjct: 608 WHQCHRHNHSIEVFTHYDLL 627


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,112,471
Number of Sequences: 219361
Number of extensions: 856133
Number of successful extensions: 2021
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2020
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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