| Clone Name | rbast71f06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK105904.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F12, full insert sequence Length = 1456 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 240 tattgtatgcctataaacttggcatagccaacccatagtagagaa 284 |||||||||||||| ||||||||||| ||||||| ||||||||| Sbjct: 1211 tattgtatgcctatccacttggcatagtcaacccacagtagagaa 1167
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05, complete sequence Length = 178013 Score = 46.1 bits (23), Expect = 0.060 Identities = 32/35 (91%) Strand = Plus / Minus Query: 240 tattgtatgcctataaacttggcatagccaaccca 274 |||||||||||||| ||||||||||| ||||||| Sbjct: 130475 tattgtatgcctatccacttggcatagtcaaccca 130441
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.060 Identities = 32/35 (91%) Strand = Plus / Minus Query: 240 tattgtatgcctataaacttggcatagccaaccca 274 |||||||||||||| ||||||||||| ||||||| Sbjct: 18657360 tattgtatgcctatccacttggcatagtcaaccca 18657326
>ref|NM_053783.1| Rattus norvegicus interferon gamma receptor 1 (Ifngr), mRNA Length = 1860 Score = 46.1 bits (23), Expect = 0.060 Identities = 23/23 (100%) Strand = Plus / Minus Query: 144 aggcagatgagtcaggataggaa 166 ||||||||||||||||||||||| Sbjct: 364 aggcagatgagtcaggataggaa 342
>gb|AF201901.1|AF201901 Rattus norvegicus interferon-gamma receptor mRNA, complete cds Length = 1860 Score = 46.1 bits (23), Expect = 0.060 Identities = 23/23 (100%) Strand = Plus / Minus Query: 144 aggcagatgagtcaggataggaa 166 ||||||||||||||||||||||| Sbjct: 364 aggcagatgagtcaggataggaa 342
>gb|BC062039.1| Rattus norvegicus interferon gamma receptor 1, mRNA (cDNA clone MGC:72347 IMAGE:5598500), complete cds Length = 1930 Score = 46.1 bits (23), Expect = 0.060 Identities = 23/23 (100%) Strand = Plus / Minus Query: 144 aggcagatgagtcaggataggaa 166 ||||||||||||||||||||||| Sbjct: 306 aggcagatgagtcaggataggaa 284
>emb|Z28197.1|SCYKL197C S.cerevisiae chromosome XI reading frame ORF YKL197c Length = 4713 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 gagaattcgacagattaccat 79 ||||||||||||||||||||| Sbjct: 3819 gagaattcgacagattaccat 3839
>gb|DQ011146.1| Leptinotarsa decemlineata transposon Mild-1b, complete sequence; and diapause-associated transcript-3 (DAT-3) gene, partial sequence Length = 3984 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 aatccaactctatcattagtg 133 ||||||||||||||||||||| Sbjct: 1291 aatccaactctatcattagtg 1311
>emb|Z28196.1|SCYKL196C S.cerevisiae chromosome XI reading frame ORF YKL196c Length = 1883 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 gagaattcgacagattaccat 79 ||||||||||||||||||||| Sbjct: 172 gagaattcgacagattaccat 192
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 ctttctttttagcaaaagca 113 |||||||||||||||||||| Sbjct: 1017801 ctttctttttagcaaaagca 1017782
>dbj|AK137666.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930017J12 product:unclassifiable, full insert sequence Length = 4604 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tttctttttagcaaaagcaa 114 |||||||||||||||||||| Sbjct: 3965 tttctttttagcaaaagcaa 3946
>dbj|AK090343.1| Mus musculus 15 days embryo brain cDNA, RIKEN full-length enriched library, clone:G630056H24 product:hypothetical Ankyrin repeat profile/Ankyrin-repeat/Ankyrin repeat region circular profile/Yeast DNA-binding domain containing protein, full insert sequence Length = 2379 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 acaaaacccacaaaccaaca 45 |||||||||||||||||||| Sbjct: 968 acaaaacccacaaaccaaca 949
>gb|AC092578.2| Homo sapiens BAC clone RP11-15F20 from 2, complete sequence Length = 147706 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 ttgggcaatgccaggtctgtattc 235 ||||||||||||||| |||||||| Sbjct: 55651 ttgggcaatgccaggcctgtattc 55674
>emb|AL672186.7| Mouse DNA sequence from clone RP23-42G2 on chromosome X, complete sequence Length = 205757 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 attgtatgcctataaacttg 260 |||||||||||||||||||| Sbjct: 114311 attgtatgcctataaacttg 114330
>emb|AL935121.9| Mouse DNA sequence from clone RP23-432M14 on chromosome 2, complete sequence Length = 106940 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tttctttttagcaaaagcaa 114 |||||||||||||||||||| Sbjct: 66688 tttctttttagcaaaagcaa 66669
>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence Length = 190414 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 ttctctgcacgcatctttcttttt 103 |||||||||| ||||||||||||| Sbjct: 75625 ttctctgcacacatctttcttttt 75602
>emb|AL831792.6| Mouse DNA sequence from clone RP23-379L17 on chromosome 4, complete sequence Length = 169747 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 acttattgtatgcctataaa 256 |||||||||||||||||||| Sbjct: 76517 acttattgtatgcctataaa 76536
>gb|AC158921.17| Mus musculus chromosome 15, clone RP23-120K5, complete sequence Length = 218949 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 acaaaacccacaaaccaaca 45 |||||||||||||||||||| Sbjct: 125466 acaaaacccacaaaccaaca 125447 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,508,877 Number of Sequences: 3902068 Number of extensions: 2508877 Number of successful extensions: 41540 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41495 Number of HSP's gapped (non-prelim): 45 length of query: 284 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 262 effective length of database: 17,147,199,772 effective search space: 4492566340264 effective search space used: 4492566340264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)