ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast71f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK105904.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
2gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.060
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.060
4ref|NM_053783.1| Rattus norvegicus interferon gamma receptor 1 (... 46 0.060
5gb|AF201901.1|AF201901 Rattus norvegicus interferon-gamma recept... 46 0.060
6gb|BC062039.1| Rattus norvegicus interferon gamma receptor 1, mR... 46 0.060
7emb|Z28197.1|SCYKL197C S.cerevisiae chromosome XI reading frame ... 42 0.94
8gb|DQ011146.1| Leptinotarsa decemlineata transposon Mild-1b, com... 42 0.94
9emb|Z28196.1|SCYKL196C S.cerevisiae chromosome XI reading frame ... 42 0.94
10gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome 40 3.7
11dbj|AK137666.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 3.7
12dbj|AK090343.1| Mus musculus 15 days embryo brain cDNA, RIKEN fu... 40 3.7
13gb|AC092578.2| Homo sapiens BAC clone RP11-15F20 from 2, complet... 40 3.7
14emb|AL672186.7| Mouse DNA sequence from clone RP23-42G2 on chrom... 40 3.7
15emb|AL935121.9| Mouse DNA sequence from clone RP23-432M14 on chr... 40 3.7
16gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complet... 40 3.7
17emb|AL831792.6| Mouse DNA sequence from clone RP23-379L17 on chr... 40 3.7
18gb|AC158921.17| Mus musculus chromosome 15, clone RP23-120K5, co... 40 3.7

>dbj|AK105904.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F12, full
            insert sequence
          Length = 1456

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 240  tattgtatgcctataaacttggcatagccaacccatagtagagaa 284
            ||||||||||||||  ||||||||||| ||||||| |||||||||
Sbjct: 1211 tattgtatgcctatccacttggcatagtcaacccacagtagagaa 1167



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>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05,
              complete sequence
          Length = 178013

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 240    tattgtatgcctataaacttggcatagccaaccca 274
              ||||||||||||||  ||||||||||| |||||||
Sbjct: 130475 tattgtatgcctatccacttggcatagtcaaccca 130441



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 240      tattgtatgcctataaacttggcatagccaaccca 274
                ||||||||||||||  ||||||||||| |||||||
Sbjct: 18657360 tattgtatgcctatccacttggcatagtcaaccca 18657326



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>ref|NM_053783.1| Rattus norvegicus interferon gamma receptor 1 (Ifngr), mRNA
          Length = 1860

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 144 aggcagatgagtcaggataggaa 166
           |||||||||||||||||||||||
Sbjct: 364 aggcagatgagtcaggataggaa 342



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>gb|AF201901.1|AF201901 Rattus norvegicus interferon-gamma receptor mRNA, complete cds
          Length = 1860

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 144 aggcagatgagtcaggataggaa 166
           |||||||||||||||||||||||
Sbjct: 364 aggcagatgagtcaggataggaa 342



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>gb|BC062039.1| Rattus norvegicus interferon gamma receptor 1, mRNA (cDNA clone
           MGC:72347 IMAGE:5598500), complete cds
          Length = 1930

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 144 aggcagatgagtcaggataggaa 166
           |||||||||||||||||||||||
Sbjct: 306 aggcagatgagtcaggataggaa 284



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>emb|Z28197.1|SCYKL197C S.cerevisiae chromosome XI reading frame ORF YKL197c
          Length = 4713

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 59   gagaattcgacagattaccat 79
            |||||||||||||||||||||
Sbjct: 3819 gagaattcgacagattaccat 3839



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>gb|DQ011146.1| Leptinotarsa decemlineata transposon Mild-1b, complete sequence; and
            diapause-associated transcript-3 (DAT-3) gene, partial
            sequence
          Length = 3984

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 113  aatccaactctatcattagtg 133
            |||||||||||||||||||||
Sbjct: 1291 aatccaactctatcattagtg 1311



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>emb|Z28196.1|SCYKL196C S.cerevisiae chromosome XI reading frame ORF YKL196c
          Length = 1883

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 59  gagaattcgacagattaccat 79
           |||||||||||||||||||||
Sbjct: 172 gagaattcgacagattaccat 192



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>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome
          Length = 3059876

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 94      ctttctttttagcaaaagca 113
               ||||||||||||||||||||
Sbjct: 1017801 ctttctttttagcaaaagca 1017782



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>dbj|AK137666.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930017J12 product:unclassifiable, full
            insert sequence
          Length = 4604

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   tttctttttagcaaaagcaa 114
            ||||||||||||||||||||
Sbjct: 3965 tttctttttagcaaaagcaa 3946



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>dbj|AK090343.1| Mus musculus 15 days embryo brain cDNA, RIKEN full-length enriched
           library, clone:G630056H24 product:hypothetical Ankyrin
           repeat profile/Ankyrin-repeat/Ankyrin repeat region
           circular profile/Yeast DNA-binding domain containing
           protein, full insert sequence
          Length = 2379

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  acaaaacccacaaaccaaca 45
           ||||||||||||||||||||
Sbjct: 968 acaaaacccacaaaccaaca 949



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>gb|AC092578.2| Homo sapiens BAC clone RP11-15F20 from 2, complete sequence
          Length = 147706

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 212   ttgggcaatgccaggtctgtattc 235
             ||||||||||||||| ||||||||
Sbjct: 55651 ttgggcaatgccaggcctgtattc 55674



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>emb|AL672186.7| Mouse DNA sequence from clone RP23-42G2 on chromosome X, complete
              sequence
          Length = 205757

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    attgtatgcctataaacttg 260
              ||||||||||||||||||||
Sbjct: 114311 attgtatgcctataaacttg 114330



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>emb|AL935121.9| Mouse DNA sequence from clone RP23-432M14 on chromosome 2, complete
             sequence
          Length = 106940

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    tttctttttagcaaaagcaa 114
             ||||||||||||||||||||
Sbjct: 66688 tttctttttagcaaaagcaa 66669



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>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence
          Length = 190414

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 80    ttctctgcacgcatctttcttttt 103
             |||||||||| |||||||||||||
Sbjct: 75625 ttctctgcacacatctttcttttt 75602



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>emb|AL831792.6| Mouse DNA sequence from clone RP23-379L17 on chromosome 4, complete
             sequence
          Length = 169747

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   acttattgtatgcctataaa 256
             ||||||||||||||||||||
Sbjct: 76517 acttattgtatgcctataaa 76536



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>gb|AC158921.17| Mus musculus chromosome 15, clone RP23-120K5, complete sequence
          Length = 218949

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     acaaaacccacaaaccaaca 45
              ||||||||||||||||||||
Sbjct: 125466 acaaaacccacaaaccaaca 125447


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,508,877
Number of Sequences: 3902068
Number of extensions: 2508877
Number of successful extensions: 41540
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41495
Number of HSP's gapped (non-prelim): 45
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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