ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast71e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ617794.1| Secale cereale mRNA for ocs-element binding fact... 256 5e-65
2gb|AF479057.1| Triticum aestivum ocs-element binding factor 1 mR... 192 6e-46
3dbj|AB185280.1| Oryza sativa (japonica cultivar-group) OsOBF1 mR... 52 0.001
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
6emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 52 0.001
7gb|AC093363.12| Mus musculus chromosome 7, clone RP23-60O3, comp... 44 0.35
8gb|AC174642.2| Mus musculus BAC clone RP24-362N12 from chromosom... 44 0.35
9emb|AL353693.19| Human DNA sequence from clone RP11-470P21 on ch... 42 1.4
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
11dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
12dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
13gb|AC171178.2| Gallus gallus BAC clone CH261-77I20 from chromoso... 42 1.4
14gb|AC153508.2| Mus musculus 10 BAC RP23-233B6 (Roswell Park Canc... 40 5.5
15ref|NM_194322.1| Homo sapiens otoferlin (OTOF), transcript varia... 40 5.5
16ref|NM_194323.1| Homo sapiens otoferlin (OTOF), transcript varia... 40 5.5
17ref|NM_004802.2| Homo sapiens otoferlin (OTOF), transcript varia... 40 5.5
18gb|BT018824.1| Zea mays clone EL01N0532F03.d mRNA sequence 40 5.5
19ref|NM_194248.1| Homo sapiens otoferlin (OTOF), transcript varia... 40 5.5
20ref|XM_416405.1| PREDICTED: Gallus gallus similar to Epidermal g... 40 5.5
21gb|BC049635.1| Mus musculus cDNA sequence BC049635, mRNA (cDNA c... 40 5.5
22gb|AC113014.9| Mus musculus chromosome 10, clone RP23-174O18, co... 40 5.5
23ref|XM_972653.1| PREDICTED: Mus musculus cDNA sequence BC049635,... 40 5.5
24ref|XM_972609.1| PREDICTED: Mus musculus cDNA sequence BC049635,... 40 5.5
25ref|XM_972706.1| PREDICTED: Mus musculus cDNA sequence BC049635,... 40 5.5
26gb|AC110815.6| Mus musculus BAC clone RP23-2I10 from chromosome ... 40 5.5
27gb|AC129295.4| Mus musculus BAC clone RP24-560M23 from chromosom... 40 5.5
28gb|AC115298.6| Mus musculus BAC clone RP23-224G24 from X, comple... 40 5.5
29gb|AC124708.2| Mus musculus BAC clone RP24-79O16 from 6, complet... 40 5.5
30gb|U00051.1| Caenorhabditis elegans cosmid F42G9, complete sequence 40 5.5
31emb|AL139036.12| Human DNA sequence from clone RP11-285H24 on ch... 40 5.5
32dbj|AK141954.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 5.5
33dbj|AK133100.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.5
34ref|NM_001024343.1| Rattus norvegicus similar to hypothetical pr... 40 5.5
35emb|BX931875.2| Gallus gallus finished cDNA, clone ChEST798a16 40 5.5
36dbj|AK052361.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 40 5.5
37dbj|AK077002.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.5
38ref|NM_064855.1| Caenorhabditis elegans F42G9.8 (F42G9.8) mRNA, ... 40 5.5
39gb|BC082005.1| Rattus norvegicus similar to hypothetical protein... 40 5.5
40dbj|AK086413.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 5.5
41gb|AC157660.2| Mus musculus BAC clone RP23-263I16 from chromosom... 40 5.5
42gb|AC093378.5| Homo sapiens BAC clone RP11-296O15 from 2, comple... 40 5.5
43gb|AF183187.1|AF183187 Homo sapiens heart/fetal otoferlin (OTOF)... 40 5.5
44gb|AF183186.1|AF183186 Homo sapiens brain otoferlin short isofor... 40 5.5
45gb|AF183185.1|AF183185 Homo sapiens brain otoferlin long isoform... 40 5.5
46gb|AC013262.7| Homo sapiens BAC clone RP11-89C12 from 2, complet... 40 5.5
47emb|X62745.1|ZMOCSBFA Z.mays OBF1 mRNA for ocs-element binding f... 40 5.5
48gb|AC157472.3| Medicago truncatula chromosome 7 BAC clone mth2-4... 40 5.5
49gb|BC034531.1| Mus musculus aldehyde dehydrogenase 1 family, mem... 40 5.5
50gb|AY103652.1| Zea mays PCO086174 mRNA sequence 40 5.5
51gb|AC007106.6|AC007106 Homo sapiens chromosome 4 clone C0383J20 ... 40 5.5
52gb|AF107403.1|AF107403 Homo sapiens otoferlin (OTOF) mRNA, compl... 40 5.5
53gb|AC135015.3| Mus musculus BAC clone RP24-227L14 from 8, comple... 40 5.5
54ref|NM_177785.2| Mus musculus cDNA sequence BC049635 (BC049635),... 40 5.5
55gb|AC126930.4| Mus musculus BAC clone RP24-547J4 from 8, complet... 40 5.5
56ref|NM_153543.1| Mus musculus aldehyde dehydrogenase 1 family, m... 40 5.5
57gb|AC136215.5| Mus musculus BAC clone RP23-148L8 from 6, complet... 40 5.5
58emb|CT030126.6| Mouse DNA sequence from clone RP23-430F12 on chr... 40 5.5
59emb|AL929015.3| Mouse DNA sequence from clone RP23-412F11 on chr... 40 5.5
60emb|AL672276.9| Mouse DNA sequence from clone RP23-124L1 on chro... 40 5.5 
>emb|AJ617794.1| Secale cereale mRNA for ocs-element binding factor 1 (obf1 gene)
          Length = 827

 Score =  256 bits (129), Expect = 5e-65
 Identities = 162/172 (94%), Gaps = 2/172 (1%)
 Strand = Plus / Minus

                                                                       
Query: 242 ttcttcctcttgccagccacagctcagctcctacaggggggatcttgaattattgaccca 301
           |||||||||||||||||||||||||||||||||||||||  ||| | |||||||||||||
Sbjct: 659 ttcttcctcttgccagccacagctcagctcctacagggg--atcctcaattattgaccca 602

                                                                       
Query: 302 atcatgactggatggatcagtactggagcatgtgcgtggcggtggcggcaatgggcatgg 361
           ||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 601 atcatcactggagggatcagtactggagcatgtgcgtggcggtggcggcgatgggcatgg 542

                                                               
Query: 362 cggtggcagggtaggggatctgccacggtcggagcagggggtcgtcgggcgg 413
           ||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 541 cggtggcagggtacgggatctgccacggccggagcagggggtcatcgggcgg 490



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 41/43 (95%), Gaps = 1/43 (2%)
 Strand = Plus / Minus

                                                      
Query: 43  tagaacacaaccatgcatataatt-acccttattactgttaca 84
           |||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 820 tagaacacaaccatacatataattaacccttattactgttaca 778



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 102 ggacgacgacagacacttactgaaacataataa 134
           |||||||||| ||||||||||||||||||||||
Sbjct: 758 ggacgacgacggacacttactgaaacataataa 726
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>gb|AF479057.1| Triticum aestivum ocs-element binding factor 1 mRNA, partial cds
          Length = 633

 Score =  192 bits (97), Expect = 6e-46
 Identities = 118/125 (94%)
 Strand = Plus / Minus

                                                                       
Query: 289 aattattgacccaatcatgactggatggatcagtactggagcatgtgcgtggcggtggcg 348
           |||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct: 631 aattattgacccaatcatcaccggatcgatcagtactggagcatgtgcgtggcggtggcg 572

                                                                       
Query: 349 gcaatgggcatggcggtggcagggtaggggatctgccacggtcggagcagggggtcgtcg 408
            | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 571 tcgatgggcatggcggtggcagggtacgggatctgccacggccggagcagggggtcgtcg 512

                
Query: 409 ggcgg 413
           |||||
Sbjct: 511 ggcgg 507
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>dbj|AB185280.1| Oryza sativa (japonica cultivar-group) OsOBF1 mRNA for bZIP
           protein, complete cds
          Length = 1277

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 361 gcggtggcagggtaggggatctgccacggtcggagcagggggtcgtcggg 410
           |||| ||| ||| ||||||||||||| || |||||||| |||||||||||
Sbjct: 950 gcggcggcggggcaggggatctgccatggccggagcagcgggtcgtcggg 901



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 318 tcagtactggagcatgtgcgtggcgg 343
           |||||||||||||||||||| |||||
Sbjct: 969 tcagtactggagcatgtgcgcggcgg 944
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 361      gcggtggcagggtaggggatctgccacggtcggagcagggggtcgtcggg 410
                |||| ||| ||| ||||||||||||| || |||||||| |||||||||||
Sbjct: 23001976 gcggcggcggggcaggggatctgccatggccggagcagcgggtcgtcggg 23001927



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 318      tcagtactggagcatgtgcgtggcgg 343
                |||||||||||||||||||| |||||
Sbjct: 23001995 tcagtactggagcatgtgcgcggcgg 23001970
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 361      gcggtggcagggtaggggatctgccacggtcggagcagggggtcgtcggg 410
                |||| ||| ||| ||||||||||||| || |||||||| |||||||||||
Sbjct: 22930167 gcggcggcggggcaggggatctgccatggccggagcagcgggtcgtcggg 22930118



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 318      tcagtactggagcatgtgcgtggcgg 343
                |||||||||||||||||||| |||||
Sbjct: 22930186 tcagtactggagcatgtgcgcggcgg 22930161
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>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 155568

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 361    gcggtggcagggtaggggatctgccacggtcggagcagggggtcgtcggg 410
              |||| ||| ||| ||||||||||||| || |||||||| |||||||||||
Sbjct: 111253 gcggcggcggggcaggggatctgccatggccggagcagcgggtcgtcggg 111204



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 318    tcagtactggagcatgtgcgtggcgg 343
              |||||||||||||||||||| |||||
Sbjct: 111272 tcagtactggagcatgtgcgcggcgg 111247
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>gb|AC093363.12| Mus musculus chromosome 7, clone RP23-60O3, complete sequence
          Length = 254081

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 248    ctcttgccagccacagctcagctcct 273
              |||| |||||||||||||||||||||
Sbjct: 223230 ctctggccagccacagctcagctcct 223205
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>gb|AC174642.2| Mus musculus BAC clone RP24-362N12 from chromosome 7, complete sequence
          Length = 144527

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 248   ctcttgccagccacagctcagctcct 273
             |||| |||||||||||||||||||||
Sbjct: 83242 ctctggccagccacagctcagctcct 83267
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>emb|AL353693.19| Human DNA sequence from clone RP11-470P21 on chromosome 9 Contains part
             of the APBA1 gene for myloid beta (A4) precursor
             protein-binding, family A, member 1 (X11) and one CpG
             island, complete sequence
          Length = 63701

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 255   cagccacagctcagctcctac 275
             |||||||||||||||||||||
Sbjct: 11713 cagccacagctcagctcctac 11733
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 38       atacatagaacacaaccatgcatat 62
                ||||||||||||| |||||||||||
Sbjct: 17343604 atacatagaacactaccatgcatat 17343628
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>dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0640E12
          Length = 167353

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 38     atacatagaacacaaccatgcatat 62
              ||||||||||||| |||||||||||
Sbjct: 148729 atacatagaacactaccatgcatat 148753
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>dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0434A03
          Length = 146505

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 38    atacatagaacacaaccatgcatat 62
             ||||||||||||| |||||||||||
Sbjct: 11828 atacatagaacactaccatgcatat 11852
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>gb|AC171178.2| Gallus gallus BAC clone CH261-77I20 from chromosome ul, complete
             sequence
          Length = 237797

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 121   ctgaaacataataataaacacaacatata 149
             |||||||| ||||||||||||||||||||
Sbjct: 48381 ctgaaaca-aataataaacacaacatata 48408
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>gb|AC153508.2| Mus musculus 10 BAC RP23-233B6 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 190780

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 229  gctcttcttggttttcttcc 248
            ||||||||||||||||||||
Sbjct: 9881 gctcttcttggttttcttcc 9900
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>ref|NM_194322.1| Homo sapiens otoferlin (OTOF), transcript variant 3, mRNA
          Length = 5124

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 255 cagccacagctcagctcctacagg 278
           ||||||||||||||||||| ||||
Sbjct: 391 cagccacagctcagctcctccagg 368
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>ref|NM_194323.1| Homo sapiens otoferlin (OTOF), transcript variant 4, mRNA
          Length = 4772

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 255 cagccacagctcagctcctacagg 278
           ||||||||||||||||||| ||||
Sbjct: 297 cagccacagctcagctcctccagg 274
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>ref|NM_004802.2| Homo sapiens otoferlin (OTOF), transcript variant 2, mRNA
          Length = 4970

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 255 cagccacagctcagctcctacagg 278
           ||||||||||||||||||| ||||
Sbjct: 297 cagccacagctcagctcctccagg 274
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>gb|BT018824.1| Zea mays clone EL01N0532F03.d mRNA sequence
          Length = 1409

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 352  atgggcatggcggtggcagggtaggggatctgccacggtcggagcagggggtcgtc 407
            |||||||||||||  || |||||||| | |||||| || || ||||| ||||||||
Sbjct: 1016 atgggcatggcggcagccgggtagggcagctgccagggacgcagcagcgggtcgtc 961
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>ref|NM_194248.1| Homo sapiens otoferlin (OTOF), transcript variant 1, mRNA
          Length = 7172

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 255  cagccacagctcagctcctacagg 278
            ||||||||||||||||||| ||||
Sbjct: 2439 cagccacagctcagctcctccagg 2416
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>ref|XM_416405.1| PREDICTED: Gallus gallus similar to Epidermal growth factor receptor
            kinase substrate EPS8 (LOC418174), mRNA
          Length = 2675

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  ttcttggttttcttcctctt 252
            ||||||||||||||||||||
Sbjct: 1102 ttcttggttttcttcctctt 1083
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>gb|BC049635.1| Mus musculus cDNA sequence BC049635, mRNA (cDNA clone MGC:58387
           IMAGE:6774793), complete cds
          Length = 1475

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ttcttggttttcttcctctt 252
           ||||||||||||||||||||
Sbjct: 883 ttcttggttttcttcctctt 864
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>gb|AC113014.9| Mus musculus chromosome 10, clone RP23-174O18, complete sequence
          Length = 187065

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    gctcttcttggttttcttcc 248
              ||||||||||||||||||||
Sbjct: 154014 gctcttcttggttttcttcc 154033
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>ref|XM_972653.1| PREDICTED: Mus musculus cDNA sequence BC049635, transcript variant
           4 (BC049635), mRNA
          Length = 1543

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ttcttggttttcttcctctt 252
           ||||||||||||||||||||
Sbjct: 779 ttcttggttttcttcctctt 760
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>ref|XM_972609.1| PREDICTED: Mus musculus cDNA sequence BC049635, transcript variant
           3 (BC049635), mRNA
          Length = 1544

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ttcttggttttcttcctctt 252
           ||||||||||||||||||||
Sbjct: 777 ttcttggttttcttcctctt 758
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>ref|XM_972706.1| PREDICTED: Mus musculus cDNA sequence BC049635, transcript variant
           2 (BC049635), mRNA
          Length = 1640

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ttcttggttttcttcctctt 252
           ||||||||||||||||||||
Sbjct: 873 ttcttggttttcttcctctt 854
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>gb|AC110815.6| Mus musculus BAC clone RP23-2I10 from chromosome 12, complete sequence
          Length = 186797

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/35 (91%), Gaps = 2/35 (5%)
 Strand = Plus / Plus

                                                
Query: 119   tactgaaacataataataaacacaacatatagcag 153
             |||||||||||||||  ||| ||||||||||||||
Sbjct: 99860 tactgaaacataata--aaaaacaacatatagcag 99892
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>gb|AC129295.4| Mus musculus BAC clone RP24-560M23 from chromosome 1, complete
            sequence
          Length = 121538

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  ataataataaacacaacata 147
            ||||||||||||||||||||
Sbjct: 3295 ataataataaacacaacata 3314
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>gb|AC115298.6| Mus musculus BAC clone RP23-224G24 from X, complete sequence
          Length = 184032

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     tattactgttacaaaatagc 91
              ||||||||||||||||||||
Sbjct: 178446 tattactgttacaaaatagc 178427
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>gb|AC124708.2| Mus musculus BAC clone RP24-79O16 from 6, complete sequence
          Length = 171638

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     acatatggcatagttcatga 27
             ||||||||||||||||||||
Sbjct: 18096 acatatggcatagttcatga 18077
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>gb|U00051.1| Caenorhabditis elegans cosmid F42G9, complete sequence
          Length = 34008

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   tgaattattgacccaatcat 306
             ||||||||||||||||||||
Sbjct: 16067 tgaattattgacccaatcat 16048
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>emb|AL139036.12| Human DNA sequence from clone RP11-285H24 on chromosome 13q22.1-22.3
             Contains the 5' end of the KLF12 gene for Kruppel-like
             factor 12, complete sequence
          Length = 109810

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   ttcttggttttcttcctctt 252
             ||||||||||||||||||||
Sbjct: 72449 ttcttggttttcttcctctt 72430
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>dbj|AK141954.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130074P12 product:Similar to
            10-formyltetrahydrofolate dehydrogenase, full insert
            sequence
          Length = 5982

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  gctcttcttggttttcttcc 248
            ||||||||||||||||||||
Sbjct: 1657 gctcttcttggttttcttcc 1638
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>dbj|AK133100.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930572P17 product:hypothetical
           Serine-rich region profile containing protein, full
           insert sequence
          Length = 1365

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ttcttggttttcttcctctt 252
           ||||||||||||||||||||
Sbjct: 813 ttcttggttttcttcctctt 794
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>ref|NM_001024343.1| Rattus norvegicus similar to hypothetical protein 4931430D02
           (LOC500445), mRNA
          Length = 1346

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ttcttggttttcttcctctt 252
           ||||||||||||||||||||
Sbjct: 735 ttcttggttttcttcctctt 716
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>emb|BX931875.2| Gallus gallus finished cDNA, clone ChEST798a16
          Length = 762

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ttcttggttttcttcctctt 252
           ||||||||||||||||||||
Sbjct: 758 ttcttggttttcttcctctt 739
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>dbj|AK052361.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
            library, clone:D330038I09 product:similar to
            10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE (EC 1.5.1.6)
            (10-FTHFDH) (FBP-CI) [Rattus norvegicus], full insert
            sequence
          Length = 3939

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  gctcttcttggttttcttcc 248
            ||||||||||||||||||||
Sbjct: 1587 gctcttcttggttttcttcc 1568
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>dbj|AK077002.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4931430D02 product:hypothetical protein,
           full insert sequence
          Length = 1659

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ttcttggttttcttcctctt 252
           ||||||||||||||||||||
Sbjct: 892 ttcttggttttcttcctctt 873
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>ref|NM_064855.1| Caenorhabditis elegans F42G9.8 (F42G9.8) mRNA, complete cds
          Length = 780

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 tgaattattgacccaatcat 306
           ||||||||||||||||||||
Sbjct: 114 tgaattattgacccaatcat 95
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>gb|BC082005.1| Rattus norvegicus similar to hypothetical protein 4931430D02, mRNA
           (cDNA clone MGC:94253 IMAGE:7131603), complete cds
          Length = 1346

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ttcttggttttcttcctctt 252
           ||||||||||||||||||||
Sbjct: 735 ttcttggttttcttcctctt 716
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>dbj|AK086413.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930026K06 product:weakly similar to
            10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE (EC 1.5.1.6)
            (10-FTHFDH) [Homo sapiens], full insert sequence
          Length = 3512

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  gctcttcttggttttcttcc 248
            ||||||||||||||||||||
Sbjct: 1640 gctcttcttggttttcttcc 1621
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>gb|AC157660.2| Mus musculus BAC clone RP23-263I16 from chromosome 1, complete sequence
          Length = 192026

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   ataataataaacacaacata 147
             ||||||||||||||||||||
Sbjct: 96762 ataataataaacacaacata 96743
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>gb|AC093378.5| Homo sapiens BAC clone RP11-296O15 from 2, complete sequence
          Length = 63849

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 255   cagccacagctcagctcctacagg 278
             ||||||||||||||||||| ||||
Sbjct: 61211 cagccacagctcagctcctccagg 61234
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>gb|AF183187.1|AF183187 Homo sapiens heart/fetal otoferlin (OTOF) mRNA, complete cds
          Length = 4772

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 255 cagccacagctcagctcctacagg 278
           ||||||||||||||||||| ||||
Sbjct: 297 cagccacagctcagctcctccagg 274
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>gb|AF183186.1|AF183186 Homo sapiens brain otoferlin short isoform (OTOF) mRNA, complete
           cds
          Length = 5124

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 255 cagccacagctcagctcctacagg 278
           ||||||||||||||||||| ||||
Sbjct: 391 cagccacagctcagctcctccagg 368
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>gb|AF183185.1|AF183185 Homo sapiens brain otoferlin long isoform (OTOF) mRNA, complete cds
          Length = 7172

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 255  cagccacagctcagctcctacagg 278
            ||||||||||||||||||| ||||
Sbjct: 2439 cagccacagctcagctcctccagg 2416
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>gb|AC013262.7| Homo sapiens BAC clone RP11-89C12 from 2, complete sequence
          Length = 146559

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    ataataataaacacaacata 147
              ||||||||||||||||||||
Sbjct: 102509 ataataataaacacaacata 102528
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>emb|X62745.1|ZMOCSBFA Z.mays OBF1 mRNA for ocs-element binding factor 1
          Length = 1457

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 352  atgggcatggcggtggcagggtaggggatctgccacggtcggagcagggggtcgtc 407
            |||||||||||||  || |||||||| | |||||| || || ||||| ||||||||
Sbjct: 1089 atgggcatggcggcagccgggtagggcagctgccagggacgcagcagcgggtcgtc 1034
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>gb|AC157472.3| Medicago truncatula chromosome 7 BAC clone mth2-41h16, complete
             sequence
          Length = 114287

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aacacaaccatgcatataat 65
             ||||||||||||||||||||
Sbjct: 72460 aacacaaccatgcatataat 72441
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>gb|BC034531.1| Mus musculus aldehyde dehydrogenase 1 family, member L2, mRNA (cDNA
            clone MGC:19039 IMAGE:4188055), complete cds
          Length = 5959

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  gctcttcttggttttcttcc 248
            ||||||||||||||||||||
Sbjct: 1618 gctcttcttggttttcttcc 1599
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>gb|AY103652.1| Zea mays PCO086174 mRNA sequence
          Length = 1583

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 352  atgggcatggcggtggcagggtaggggatctgccacggtcggagcagggggtcgtc 407
            |||||||||||||  || |||||||| | |||||| || || ||||| ||||||||
Sbjct: 1185 atgggcatggcggcagccgggtagggcagctgccagggacgcagcagcgggtcgtc 1130
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>gb|AC007106.6|AC007106 Homo sapiens chromosome 4 clone C0383J20 map 4p16, complete sequence
          Length = 172188

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     aacatatggcatagttcatg 26
             ||||||||||||||||||||
Sbjct: 65870 aacatatggcatagttcatg 65889
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>gb|AF107403.1|AF107403 Homo sapiens otoferlin (OTOF) mRNA, complete cds
          Length = 4970

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 255 cagccacagctcagctcctacagg 278
           ||||||||||||||||||| ||||
Sbjct: 297 cagccacagctcagctcctccagg 274
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>gb|AC135015.3| Mus musculus BAC clone RP24-227L14 from 8, complete sequence
          Length = 169193

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 246    tcctcttgccagccacagctcagctcct 273
              ||||||| ||| ||||||||||||||||
Sbjct: 123914 tcctcttcccacccacagctcagctcct 123887
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>ref|NM_177785.2| Mus musculus cDNA sequence BC049635 (BC049635), mRNA
          Length = 1659

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ttcttggttttcttcctctt 252
           ||||||||||||||||||||
Sbjct: 892 ttcttggttttcttcctctt 873
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>gb|AC126930.4| Mus musculus BAC clone RP24-547J4 from 8, complete sequence
          Length = 191241

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 246   tcctcttgccagccacagctcagctcct 273
             ||||||| ||| ||||||||||||||||
Sbjct: 14073 tcctcttcccacccacagctcagctcct 14046
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>ref|NM_153543.1| Mus musculus aldehyde dehydrogenase 1 family, member L2 (Aldh1l2),
            mRNA
          Length = 5959

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  gctcttcttggttttcttcc 248
            ||||||||||||||||||||
Sbjct: 1618 gctcttcttggttttcttcc 1599
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>gb|AC136215.5| Mus musculus BAC clone RP23-148L8 from 6, complete sequence
          Length = 167126

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     acatatggcatagttcatga 27
             ||||||||||||||||||||
Sbjct: 94357 acatatggcatagttcatga 94338
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>emb|CT030126.6| Mouse DNA sequence from clone RP23-430F12 on chromosome 12, complete
              sequence
          Length = 208848

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/35 (91%), Gaps = 2/35 (5%)
 Strand = Plus / Plus

                                                 
Query: 119    tactgaaacataataataaacacaacatatagcag 153
              |||||||||||||||  ||| ||||||||||||||
Sbjct: 168903 tactgaaacataata--aaaaacaacatatagcag 168935
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>emb|AL929015.3| Mouse DNA sequence from clone RP23-412F11 on chromosome 2, complete
             sequence
          Length = 142296

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   ctcttcttggttttcttcct 249
             ||||||||||||||||||||
Sbjct: 97241 ctcttcttggttttcttcct 97260
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>emb|AL672276.9| Mouse DNA sequence from clone RP23-124L1 on chromosome 4, complete
            sequence
          Length = 208030

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 233  ttcttggttttcttcctctt 252
            ||||||||||||||||||||
Sbjct: 7728 ttcttggttttcttcctctt 7747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,864,772
Number of Sequences: 3902068
Number of extensions: 3864772
Number of successful extensions: 80722
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 80495
Number of HSP's gapped (non-prelim): 225
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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