ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast71c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O52A1_HUMAN (Q9UKL2) Olfactory receptor 52A1 (HPFH1OR) (Odorant ... 30 3.0
2SYFB_BORPE (Q7VVR5) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 3.0
3HSP11_HELAN (P30693) 17.6 kDa class I heat shock protein 28 8.8
4SYFB_BORPA (Q7W7C6) Phenylalanyl-tRNA synthetase beta chain (EC ... 28 8.8
5SYFB_BORBR (Q7WKR4) Phenylalanyl-tRNA synthetase beta chain (EC ... 28 8.8

>O52A1_HUMAN (Q9UKL2) Olfactory receptor 52A1 (HPFH1OR) (Odorant receptor|
           HOR3'beta4)
          Length = 312

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 18/33 (54%), Positives = 19/33 (57%)
 Frame = +2

Query: 170 RFGSHGAPISHFLTH*PSCFSLITYFLLPPFLN 268
           RFGSH  P  H L      FS I Y L+PPFLN
Sbjct: 266 RFGSHIPPYIHIL------FSSI-YLLVPPFLN 291



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>SYFB_BORPE (Q7VVR5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 805

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 49  FVSLVTSKLPYKRSMRRKMVPCRIIPLWYGSAQPARPQLNTI 174
           F +L   +LP  R + R+ V  R + LW  +  PA+  L+T+
Sbjct: 688 FEALAERRLPAVRKLSRQPVVVRDLALWVDAKLPAQAMLDTV 729



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>HSP11_HELAN (P30693) 17.6 kDa class I heat shock protein|
          Length = 153

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 210 VRKCEIGAPCEPNRVELWSGWLCRSVPQRNNATWHHFP-SHGPFVREF 70
           ++K E+    E  RV   SG  CR   ++++ TWH    S G F+R F
Sbjct: 65  MKKEEVKVEVEDGRVLQISGERCREQEEKDD-TWHRVERSSGKFIRRF 111



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>SYFB_BORPA (Q7W7C6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 805

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 49  FVSLVTSKLPYKRSMRRKMVPCRIIPLWYGSAQPARPQLNTI 174
           F +L   +LP  R + R+    R + LW  +  PA+  L+T+
Sbjct: 688 FEALAERRLPAVRELSRQPAVVRDLALWVDAKLPAQAMLDTV 729



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>SYFB_BORBR (Q7WKR4) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 805

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 49  FVSLVTSKLPYKRSMRRKMVPCRIIPLWYGSAQPARPQLNTI 174
           F +L   +LP  R + R+    R + LW  +  PA+  L+T+
Sbjct: 688 FEALAERRLPAVRELSRQPAVVRDLALWVDAKLPAQAMLDTV 729


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,038,669
Number of Sequences: 219361
Number of extensions: 1084620
Number of successful extensions: 2000
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2000
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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