ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast71a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VA0E_SCHPO (Q69Z14) Vacuolar ATP synthase subunit e (EC 3.6.3.14... 29 3.5
2GLUQ_PROMM (Q7TUT1) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-)... 28 7.7
3PFA5_SCHPO (Q9C0W9) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Prot... 28 7.7

>VA0E_SCHPO (Q69Z14) Vacuolar ATP synthase subunit e (EC 3.6.3.14) (V-ATPase e|
           subunit) (Vacuolar proton pump e subunit)
          Length = 67

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 201 NTTVLWKWCLVLGYVLVFDRARMCVYLLWLLQSTARMHACKCSRKVL 61
           N T  W+  L+L +         C YLLW +   A++H  +   +VL
Sbjct: 28  NNTSTWQMSLILTF--------SCCYLLWAITYLAQLHPLEAPSRVL 66



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>GLUQ_PROMM (Q7TUT1) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)|
          Length = 306

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -1

Query: 156 LVFDRARMCVYLLWL--LQSTARMHACKCSRKVLA 58
           +VF   R  +Y  +L  L+   +++AC+CSR++LA
Sbjct: 95  VVFQSRRRGIYNSFLSALRRQGKLYACRCSRRMLA 129



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>PFA5_SCHPO (Q9C0W9) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 5)
          Length = 312

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
 Frame = -2

Query: 200 ILRFCGNGVSYWGTY*CLIER-----ECVYTYFGFCNRLHGCMLVSAPEKC*LASCSL 42
           I  F  +G++Y+  +  L          +YTY+GF N +  C    AP  C    C L
Sbjct: 65  IFFFITSGLAYFSYFRVLFSSPSFCGNTLYTYYGFDNPIFLCGPNGAPRMCGTCKCWL 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,611,589
Number of Sequences: 219361
Number of extensions: 731069
Number of successful extensions: 1500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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