ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast70g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1C86A2_ARATH (O23066) Cytochrome P450 86A2 (EC 1.14.-.-) 37 0.015
2C86A1_ARATH (P48422) Cytochrome P450 86A1 (EC 1.14.-.-) (CYPLXXX... 34 0.075
3OR1FC_HUMAN (Q8NHA8) Olfactory receptor 1F12 (Hs6M1-35P) 30 1.1
4AGRN_RAT (P25304) Agrin precursor 28 4.1
5SYE_BORPA (Q7W3X9) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 28 5.4
6SYE_BORBR (Q7WFA9) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 28 5.4
7PLS2_HUMAN (Q9NRY7) Phospholipid scramblase 2 (PL scramblase 2) ... 28 5.4
8SYE_BORPE (Q7VUU5) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 28 5.4
9PIN7_ARATH (Q940Y5) Auxin efflux carrier component 7 (AtPIN7) 28 5.4
10SIT1_YEAST (P39980) Siderophore iron transporter 1 (Siderophore ... 28 7.0
11BEM46_SCHPO (P54069) Protein bem46 28 7.0
12PIN4_ARATH (Q8RWZ6) Auxin efflux carrier component 4 (AtPIN4) 27 9.1
13RR3_CYAME (Q85FV7) Chloroplast 30S ribosomal protein S3 27 9.1
14PLS1_HUMAN (O15162) Phospholipid scramblase 1 (PL scramblase 1) ... 27 9.1
15NAS13_CAEEL (Q20191) Zinc metalloproteinase nas-13 precursor (EC... 27 9.1

>C86A2_ARATH (O23066) Cytochrome P450 86A2 (EC 1.14.-.-)|
          Length = 553

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = -1

Query: 378 PGHVVEPKLSIILHMKNGLAVTVKRRNV 295
           PGH VE K+S+ L MKNGL V V +R++
Sbjct: 486 PGHKVEQKMSLTLFMKNGLLVNVHKRDL 513



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>C86A1_ARATH (P48422) Cytochrome P450 86A1 (EC 1.14.-.-) (CYPLXXXVI)|
           (P450-dependent fatty acid omega-hydroxylase)
          Length = 513

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = -1

Query: 381 VPGHVVEPKLSIILHMKNGLAVTVKRR 301
           VPGH VE K+S+ L MKNGL V ++ R
Sbjct: 482 VPGHRVEQKMSLTLFMKNGLRVYLQPR 508



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>OR1FC_HUMAN (Q8NHA8) Olfactory receptor 1F12 (Hs6M1-35P)|
          Length = 337

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 69  HIGVCHNAHYTTHVYSSYFLILVAVYY*AHM--PLLHTYTSTYVHVCT 206
           ++ +CH  HY+T +       LVA  +   +  PLLHT    ++H C+
Sbjct: 123 YVAICHPLHYSTIMALRLCASLVAAPWVIAILNPLLHTLMMAHLHFCS 170



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>AGRN_RAT (P25304) Agrin precursor|
          Length = 1959

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 238 GRTYVATRSGHVHTCTY-VLVYVCKSGMC 155
           G TY +    HVH CT+ + +YV  +G C
Sbjct: 466 GHTYASECELHVHACTHQISLYVASAGHC 494



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>SYE_BORPA (Q7W3X9) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 481

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 247 LRPRSAGTY*LAMHGRDVPPLDGDGEPVLHVEN--DGQLGLNDV 372
           L+PR  GT+     G+ +PP+  D +PV+   N  DG    ND+
Sbjct: 136 LKPRYDGTW-RPEPGKTLPPVPADRKPVIRFRNPIDGATSWNDM 178



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>SYE_BORBR (Q7WFA9) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 481

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 247 LRPRSAGTY*LAMHGRDVPPLDGDGEPVLHVEN--DGQLGLNDV 372
           L+PR  GT+     G+ +PP+  D +PV+   N  DG    ND+
Sbjct: 136 LKPRYDGTW-RPEPGKTLPPVPADRKPVIRFRNPIDGATSWNDM 178



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>PLS2_HUMAN (Q9NRY7) Phospholipid scramblase 2 (PL scramblase 2)|
           (Ca(2+)-dependent phospholipid scramblase 2)
          Length = 224

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 170 QEWHVCLVIYCYQNKKIRRIDVCSIVCVVTYSYMCVSCVCVP*LERKWTGMGPQ 9
           Q WH CL  +  +N+K  R DV  I      S  C+ C C+  ++ + T +  Q
Sbjct: 123 QTWHPCLTKFTIKNQK--REDVLKI------SGPCIVCSCIAGVDFEITSLDEQ 168



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>SYE_BORPE (Q7VUU5) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 460

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 247 LRPRSAGTY*LAMHGRDVPPLDGDGEPVLHVEN--DGQLGLNDV 372
           L+PR  GT+     G+ +PP+  D +PV+   N  DG    ND+
Sbjct: 115 LKPRYDGTW-RPEPGKTLPPVPADRKPVIRFRNPIDGATSWNDM 157



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>PIN7_ARATH (Q940Y5) Auxin efflux carrier component 7 (AtPIN7)|
          Length = 619

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 23  PSIFFLIRAHTHSLHTYRSMSQRTLYYTRLFFLFSYSGSSILL 151
           P +  +   ++ SL     + Q  ++YT L FLF Y G+ IL+
Sbjct: 119 PLLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYRGAKILI 161



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>SIT1_YEAST (P39980) Siderophore iron transporter 1 (Siderophore iron|
           transporter ARN3) (Ferrioxamine B permease)
          Length = 628

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 17  PYPSIFFLIRAHTHSLHTYRSMSQRTLYYTRLFF 118
           P PS   LI    H++  Y  M  R +Y   LFF
Sbjct: 42  PAPSYIELIDPGVHNIEIYAEMYNRPIYRVALFF 75



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>BEM46_SCHPO (P54069) Protein bem46|
          Length = 299

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 110 LFFLFSYSGSSILLSTHATLAYIY*YVRTCMYVSA 214
           +F +  YSG + L  T   L ++Y Y +T +Y SA
Sbjct: 9   IFNVLKYSGMASLAVTLIALGFLYKYQKTLVYPSA 43



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>PIN4_ARATH (Q8RWZ6) Auxin efflux carrier component 4 (AtPIN4)|
          Length = 616

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 23  PSIFFLIRAHTHSLHTYRSMSQRTLYYTRLFFLFSYSGSSILL 151
           P +  +   +  SL     + Q  ++YT L FLF Y G+ +L+
Sbjct: 119 PLLIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLI 161



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>RR3_CYAME (Q85FV7) Chloroplast 30S ribosomal protein S3|
          Length = 205

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 9   LGAHTRPFSF*LGHTHTAYTHIGVCHNAHYTTHVYS 116
           +G  T P  F LG THT        H +H+  H YS
Sbjct: 1   MGQKTHPVGFRLGITHT--------HQSHWFAHQYS 28



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>PLS1_HUMAN (O15162) Phospholipid scramblase 1 (PL scramblase 1)|
           (Ca(2+)-dependent phospholipid scramblase 1)
           (Erythrocyte phospholipid scramblase) (MmTRA1b)
          Length = 318

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -2

Query: 173 MQEWHVCLVIYCYQNKKIRRIDVCSIVCVVTYSYMCVSCVC 51
           +Q WH CL  +  QN+K  R DV  I      S  CV C C
Sbjct: 207 IQTWHPCLPKFTIQNEK--REDVLKI------SGPCVVCSC 239



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>NAS13_CAEEL (Q20191) Zinc metalloproteinase nas-13 precursor (EC 3.4.24.21)|
           (Nematode astacin 13)
          Length = 527

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +2

Query: 11  GGPYPSIFFLIRAHTHSLHTYRSM-----SQRTLYYTRLFFLF 124
           G P P   FL+ + T S HT   M     S  +++ + LFF+F
Sbjct: 55  GCPSPPFLFLLSSSTDSSHTLSLMPSPTSSSASVFSSHLFFVF 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,087,888
Number of Sequences: 219361
Number of extensions: 934422
Number of successful extensions: 2062
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2059
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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