ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast70f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY857761.1| Triticum monococcum peroxidase 7 (POX7) mRNA, com... 398 e-108
2emb|AL159152.11| Human DNA sequence from clone RP11-165N12 on ch... 44 0.24
3gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold 40 3.7
4gb|AC151631.3| Callicebus moloch clone LB5-52D9, complete sequence 40 3.7
5gb|AC148206.3| Callicebus moloch clone LB5-384O14, complete sequ... 40 3.7
6emb|AL357353.12| Human DNA sequence from clone RP11-251L16 on ch... 40 3.7
7gb|AC146926.3| Callithrix jacchus clone CH259-265E13, complete s... 40 3.7
8gb|AC146925.5| Callithrix jacchus clone CH259-254J2, complete se... 40 3.7
9gb|AE004890.1| Pseudomonas aeruginosa PAO1, section 451 of 529 o... 40 3.7
10gb|AC148187.3| Saimiri boliviensis boliviensis clone CH254-373M5... 40 3.7
11gb|DP000019.1| Callicebus moloch target 1 genomic scaffold 40 3.7
12gb|AC151373.4| Aotus nancymaae clone CH258-480P12, complete sequ... 40 3.7
13dbj|AB010573.1| Burkholderia glumae DNA, insertion sequence IS1419 40 3.7

>gb|AY857761.1| Triticum monococcum peroxidase 7 (POX7) mRNA, complete cds
          Length = 1319

 Score =  398 bits (201), Expect = e-108
 Identities = 249/265 (93%), Gaps = 5/265 (1%)
 Strand = Plus / Minus

                                                                        
Query: 18   tttggctatcaaagtaccagaggcatcgatttctctattattcttcaacaattagcaata 77
            |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1313 tttggctatcaacgtaccagaggcatcgatttctctattattcctcaacaattagcaata 1254

                                                                        
Query: 78   agcagtagccagacctgaaaccattcttgggtaggcacagaactgcgacacgaccacccc 137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 1253 agcagtagccagacctgaaaccattcttgggtaggcacagaactgcgacacgacca---- 1198

                                                                        
Query: 138  aaacctatgtcaaacatatcgctcgctcccacaccagagctcccgtgagacacctacagg 197
             |||||||||||| ||||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct: 1197 -aacctatgtcaagcatatcgatcgctccgacaccagagctcccatgagacacctacagg 1139

                                                                        
Query: 198  cctaccgtagaaccacattcagaagtccagcacccggaacggagcgacctgcttctccag 257
            |||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 1138 cctaccgtagaaccaggttcagaaatccagcacccggaacggcgcgacctgcttctccag 1079

                                     
Query: 258  cggaggccgcccgccgttggcgacg 282
            ||| |||||||||||||||||||||
Sbjct: 1078 cggcggccgcccgccgttggcgacg 1054



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>emb|AL159152.11| Human DNA sequence from clone RP11-165N12 on chromosome 13q32.1-33.3
             Contains a novel gene, complete sequence
          Length = 160404

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 47    tttctctattattcttcaacaa 68
             ||||||||||||||||||||||
Sbjct: 38724 tttctctattattcttcaacaa 38745



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>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     gcagtagccagacctgaaaccatt 102
              |||||||||| |||||||||||||
Sbjct: 621283 gcagtagccacacctgaaaccatt 621306



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>gb|AC151631.3| Callicebus moloch clone LB5-52D9, complete sequence
          Length = 69705

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 79   gcagtagccagacctgaaaccatt 102
            |||||||||| |||||||||||||
Sbjct: 2992 gcagtagccacacctgaaaccatt 3015



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>gb|AC148206.3| Callicebus moloch clone LB5-384O14, complete sequence
          Length = 160507

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     gcagtagccagacctgaaaccatt 102
              |||||||||| |||||||||||||
Sbjct: 153671 gcagtagccacacctgaaaccatt 153694



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>emb|AL357353.12| Human DNA sequence from clone RP11-251L16 on chromosome 10, complete
             sequence
          Length = 129800

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    tcttcaacaattagcaataa 78
             ||||||||||||||||||||
Sbjct: 46814 tcttcaacaattagcaataa 46833



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>gb|AC146926.3| Callithrix jacchus clone CH259-265E13, complete sequence
          Length = 125956

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     gcagtagccagacctgaaaccatt 102
              |||||||||| |||||||||||||
Sbjct: 107715 gcagtagccacacctgaaaccatt 107738



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>gb|AC146925.5| Callithrix jacchus clone CH259-254J2, complete sequence
          Length = 160998

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 79  gcagtagccagacctgaaaccatt 102
           |||||||||| |||||||||||||
Sbjct: 746 gcagtagccacacctgaaaccatt 769



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>gb|AE004890.1| Pseudomonas aeruginosa PAO1, section 451 of 529 of the complete genome
          Length = 12326

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   cgacctgcttctccagcgga 261
             ||||||||||||||||||||
Sbjct: 10397 cgacctgcttctccagcgga 10378



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>gb|AC148187.3| Saimiri boliviensis boliviensis clone CH254-373M5, complete sequence
          Length = 180635

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     gcagtagccagacctgaaaccatt 102
              |||||||||| |||||||||||||
Sbjct: 112424 gcagtagccacacctgaaaccatt 112447



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>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold
          Length = 2105003

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     gcagtagccagacctgaaaccatt 102
              |||||||||| |||||||||||||
Sbjct: 600338 gcagtagccacacctgaaaccatt 600361



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>gb|AC151373.4| Aotus nancymaae clone CH258-480P12, complete sequence
          Length = 171933

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    gcagtagccagacctgaaaccatt 102
             |||||||||| |||||||||||||
Sbjct: 48984 gcagtagccacacctgaaaccatt 49007



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>dbj|AB010573.1| Burkholderia glumae DNA, insertion sequence IS1419
          Length = 1215

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 agcgacctgcttctccagcg 259
           ||||||||||||||||||||
Sbjct: 508 agcgacctgcttctccagcg 489


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,917,332
Number of Sequences: 3902068
Number of extensions: 1917332
Number of successful extensions: 39472
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39446
Number of HSP's gapped (non-prelim): 25
length of query: 282
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 260
effective length of database: 17,147,199,772
effective search space: 4458271940720
effective search space used: 4458271940720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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