>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 69/80 (86%), Gaps = 2/80 (2%)
 Strand = Plus / Minus

                                                                           
Query: 70      ccatcaaacttcagcaaaagctaattacttaaaatattttcactgtcctgatcttgcctt 129
               |||||||  |||||||||| |||||||||| |  |||||||  |||| ||||||||||||
Sbjct: 9991265 ccatcaatattcagcaaaacctaattacttca--tattttcggtgtcttgatcttgcctt 9991208

                                   
Query: 130     acgtttctttaccaagatct 149
                | |||||||||||||||||
Sbjct: 9991207 tcttttctttaccaagatct 9991188



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                           
Query: 343     gcatcaaaagatcacgagcagagagaagagcatgtagacgagccaacaggcgtaggcaat 402
               |||||| ||||  |||||||| ||||||||||||||||| ||||| || |||||||| ||
Sbjct: 9989394 gcatcagaagacgacgagcagcgagaagagcatgtagacaagccagcacgcgtaggcgat 9989335

                  
Query: 403     gag 405
               |||
Sbjct: 9989334 gag 9989332

>gb|AC137075.2| Genomic sequence for Oryza sativa, Nipponbare striain, clone
             OSJNBb0027B12, from chromosome 3, complete sequence
          Length = 127426

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 69/80 (86%), Gaps = 2/80 (2%)
 Strand = Plus / Minus

                                                                         
Query: 70    ccatcaaacttcagcaaaagctaattacttaaaatattttcactgtcctgatcttgcctt 129
             |||||||  |||||||||| |||||||||| |  |||||||  |||| ||||||||||||
Sbjct: 41181 ccatcaatattcagcaaaacctaattacttca--tattttcggtgtcttgatcttgcctt 41124

                                 
Query: 130   acgtttctttaccaagatct 149
              | |||||||||||||||||
Sbjct: 41123 tcttttctttaccaagatct 41104



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                         
Query: 343   gcatcaaaagatcacgagcagagagaagagcatgtagacgagccaacaggcgtaggcaat 402
             |||||| ||||  |||||||| ||||||||||||||||| ||||| || |||||||| ||
Sbjct: 39310 gcatcagaagacgacgagcagcgagaagagcatgtagacaagccagcacgcgtaggcgat 39251

                
Query: 403   gag 405
             |||
Sbjct: 39250 gag 39248

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 69/80 (86%), Gaps = 2/80 (2%)
 Strand = Plus / Minus

                                                                           
Query: 70      ccatcaaacttcagcaaaagctaattacttaaaatattttcactgtcctgatcttgcctt 129
               |||||||  |||||||||| |||||||||| |  |||||||  |||| ||||||||||||
Sbjct: 9989386 ccatcaatattcagcaaaacctaattacttca--tattttcggtgtcttgatcttgcctt 9989329

                                   
Query: 130     acgtttctttaccaagatct 149
                | |||||||||||||||||
Sbjct: 9989328 tcttttctttaccaagatct 9989309



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                           
Query: 343     gcatcaaaagatcacgagcagagagaagagcatgtagacgagccaacaggcgtaggcaat 402
               |||||| ||||  |||||||| ||||||||||||||||| ||||| || |||||||| ||
Sbjct: 9987515 gcatcagaagacgacgagcagcgagaagagcatgtagacaagccagcacgcgtaggcgat 9987456

                  
Query: 403     gag 405
               |||
Sbjct: 9987455 gag 9987453

>dbj|AK073108.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023N20, full
           insert sequence
          Length = 930

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 69/80 (86%), Gaps = 2/80 (2%)
 Strand = Plus / Minus

                                                                       
Query: 70  ccatcaaacttcagcaaaagctaattacttaaaatattttcactgtcctgatcttgcctt 129
           |||||||  |||||||||| |||||||||| |  |||||||  |||| ||||||||||||
Sbjct: 777 ccatcaatattcagcaaaacctaattacttca--tattttcggtgtcttgatcttgcctt 720

                               
Query: 130 acgtttctttaccaagatct 149
            | |||||||||||||||||
Sbjct: 719 tcttttctttaccaagatct 700



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 343 gcatcaaaagatcacgagcagagagaagagcatgtagacgagccaacaggcgtaggcaat 402
           |||||| ||||  |||||||| ||||||||||||||||| ||||| || |||||||| ||
Sbjct: 507 gcatcagaagacgacgagcagcgagaagagcatgtagacaagccagcacgcgtaggcgat 448

              
Query: 403 gag 405
           |||
Sbjct: 447 gag 445

>dbj|AK064364.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C01, full
            insert sequence
          Length = 1407

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 69/80 (86%), Gaps = 2/80 (2%)
 Strand = Plus / Minus

                                                                        
Query: 70   ccatcaaacttcagcaaaagctaattacttaaaatattttcactgtcctgatcttgcctt 129
            |||||||  |||||||||| |||||||||| |  |||||||  |||| ||||||||||||
Sbjct: 1179 ccatcaatattcagcaaaacctaattacttca--tattttcggtgtcttgatcttgcctt 1122

                                
Query: 130  acgtttctttaccaagatct 149
             | |||||||||||||||||
Sbjct: 1121 tcttttctttaccaagatct 1102



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 343 gcatcaaaagatcacgagcagagagaagagcatgtagacgagccaacaggcgtaggcaat 402
           |||||| ||||  |||||||| ||||||||||||||||| ||||| || |||||||| ||
Sbjct: 909 gcatcagaagacgacgagcagcgagaagagcatgtagacaagccagcacgcgtaggcgat 850

              
Query: 403 gag 405
           |||
Sbjct: 849 gag 847

>gb|AY107745.1| Zea mays PCO060046 mRNA sequence
          Length = 673

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 345 atcaaaagatcacgagcagagagaagagcatgtagacgagcca 387
           |||| ||||| |||||||  |||||||||||||||||||||||
Sbjct: 398 atcagaagatgacgagcaatgagaagagcatgtagacgagcca 440

>gb|BT019216.1| Zea mays clone Contig889.F mRNA sequence
          Length = 1036

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 365 gagaagagcatgtagacgagcca 387
           |||||||||||||||||||||||
Sbjct: 575 gagaagagcatgtagacgagcca 553

>gb|AC121286.7| Mus musculus chromosome 12, clone RP23-36H21, complete sequence
          Length = 227648

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 86   aaagctaattacttaaaatat 106
            |||||||||||||||||||||
Sbjct: 5592 aaagctaattacttaaaatat 5612

>emb|CR394537.12| Zebrafish DNA sequence from clone CH211-119D19 in linkage group 16,
              complete sequence
          Length = 168543

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 205    acataacattttccaaacaac 225
              |||||||||||||||||||||
Sbjct: 111649 acataacattttccaaacaac 111669

>emb|BX470243.12| Zebrafish DNA sequence from clone CH211-79J19 in linkage group 16,
             complete sequence
          Length = 191645

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 205   acataacattttccaaacaac 225
             |||||||||||||||||||||
Sbjct: 45266 acataacattttccaaacaac 45286

>gb|AC135641.7| Mus musculus BAC clone RP23-376H20 from 12, complete sequence
          Length = 171371

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 86     aaagctaattacttaaaatat 106
              |||||||||||||||||||||
Sbjct: 115667 aaagctaattacttaaaatat 115687

>gb|AC119249.7| Mus musculus chromosome 7, clone RP24-274B19, complete sequence
          Length = 182985

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 204    tacataacattttccaaacaa 224
              |||||||||||||||||||||
Sbjct: 127778 tacataacattttccaaacaa 127758

>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome
          Length = 1913428

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 82      agcaaaagctaattacttaaaata 105
               |||||||||||||||||| |||||
Sbjct: 1717954 agcaaaagctaattactttaaata 1717931

>gb|AC116726.11| Mus musculus chromosome 10, clone RP23-285L15, complete sequence
          Length = 185427

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    taaaatattttcactgtcct 118
             ||||||||||||||||||||
Sbjct: 68207 taaaatattttcactgtcct 68226

>emb|CT025534.4| M.truncatula DNA sequence from clone MTH2-1H4 on chromosome 3, complete
             sequence
          Length = 100991

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   tcaagaacagcatcaaaaga 353
             ||||||||||||||||||||
Sbjct: 43761 tcaagaacagcatcaaaaga 43780

>gb|AC146777.27| Medicago truncatula clone mth2-173c10, complete sequence
          Length = 121026

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   cacagaaactaaaggatgaa 189
             ||||||||||||||||||||
Sbjct: 70232 cacagaaactaaaggatgaa 70213

>gb|AC121239.34| Medicago truncatula clone mth1-8p19, complete sequence
          Length = 100985

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   tcaagaacagcatcaaaaga 353
             ||||||||||||||||||||
Sbjct: 43757 tcaagaacagcatcaaaaga 43776

>emb|AL161444.18| Human DNA sequence from clone RP11-312C2 on chromosome 9, complete
             sequence
          Length = 150563

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    agcaaaagctaattacttaa 101
             ||||||||||||||||||||
Sbjct: 22082 agcaaaagctaattacttaa 22063

>emb|AL137068.10| Human DNA sequence from clone RP11-165P4 on chromosome 9q34.11-34.13
             Contains a novel gene, the CEP1 gene for centrosomal
             protein 1 (FAN, CEP110), the RAB14 gene for RAB14, member
             RAS oncogene family (DKFZp762K0911), the 5' end of a novel
             gene and a CpG island, complete sequence
          Length = 147029

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ataacattttccaaacaact 226
             ||||||||||||||||||||
Sbjct: 45822 ataacattttccaaacaact 45803

>gb|AC107394.3| Homo sapiens BAC clone RP11-617I14 from 4, complete sequence
          Length = 170971

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 169   ccacagaaactaaaggatgaaaag 192
             ||||||||||||||||| ||||||
Sbjct: 39913 ccacagaaactaaaggaagaaaag 39890

>emb|CR457484.9| Zebrafish DNA sequence from clone CH211-132F3 in linkage group 18,
              complete sequence
          Length = 169672

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 355    cacgagcagagagaagagca 374
              ||||||||||||||||||||
Sbjct: 167639 cacgagcagagagaagagca 167658

>emb|BX511081.8| Zebrafish DNA sequence from clone DKEY-6B12 in linkage group 21, complete
              sequence
          Length = 210246

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     aattacttaaaatattttca 111
              ||||||||||||||||||||
Sbjct: 194839 aattacttaaaatattttca 194858

>gb|AC068298.16| Homo sapiens 3 BAC RP11-496B10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180335

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    caaaagctaattacttaaaa 103
             ||||||||||||||||||||
Sbjct: 98114 caaaagctaattacttaaaa 98133

>ref|NM_065385.3| Caenorhabditis elegans ZK1058.1 (ZK1058.1) mRNA, complete cds
          Length = 2549

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 329 ccatctcaagaacagcatca 348
           ||||||||||||||||||||
Sbjct: 838 ccatctcaagaacagcatca 819

>emb|Z35604.2|CEZK1058 Caenorhabditis elegans Cosmid ZK1058, complete sequence
          Length = 29101

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 329  ccatctcaagaacagcatca 348
            ||||||||||||||||||||
Sbjct: 8595 ccatctcaagaacagcatca 8614


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,341,575
Number of Sequences: 3902068
Number of extensions: 4341575
Number of successful extensions: 88804
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88680
Number of HSP's gapped (non-prelim): 124
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)