ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast70d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, par... 291 6e-76
2gb|AC149289.1| Solanum demissum chromosome 11 clone PGEC417F14 m... 42 0.85
3gb|AC136471.1| Solanum demissum chromosome 11 BAC PGEC561 genomi... 42 0.85
4emb|CR376838.7| Zebrafish DNA sequence from clone DKEY-15F23 in ... 42 0.85
5emb|BX511027.20| Zebrafish DNA sequence from clone CH211-281P14 ... 42 0.85
6emb|BX649496.12| Zebrafish DNA sequence from clone CH211-212I24 ... 42 0.85
7gb|AC115719.10| Mus musculus chromosome 18, clone RP24-356J16, c... 40 3.4
8emb|CR376773.7| Zebrafish DNA sequence from clone CH211-23E22 in... 40 3.4
9emb|CR407585.14| Zebrafish DNA sequence from clone CH211-141O18 ... 40 3.4
10emb|BX005314.35| Zebrafish DNA sequence from clone CH211-155D24 ... 40 3.4
11emb|BX510331.13| Zebrafish DNA sequence from clone CH211-42B22 i... 40 3.4
12emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chr... 40 3.4
13emb|CR407558.22| Zebrafish DNA sequence from clone CH211-107M8 i... 40 3.4
14gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 geno... 40 3.4
15gb|AC099040.10| Oryza sativa chromosome 10 BAC OSJNBa0004P12 gen... 40 3.4
16emb|BX323009.6| Zebrafish DNA sequence from clone DKEYP-70D5 in ... 40 3.4
17dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
18gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Can... 40 3.4
19gb|AC067721.22| Homo sapiens 3 BAC RP11-111F10 (Roswell Park Can... 40 3.4
20emb|BX004996.8| Zebrafish DNA sequence from clone CH211-268F23 i... 40 3.4
21emb|AL954844.16| Zebrafish DNA sequence from clone XX-172G11, co... 40 3.4
22emb|CT025735.16| Mouse DNA sequence from clone RP24-338F19 on ch... 40 3.4
23emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15,... 40 3.4
24gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4

>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence
          Length = 779

 Score =  291 bits (147), Expect = 6e-76
 Identities = 167/173 (96%), Gaps = 3/173 (1%)
 Strand = Plus / Minus

                                                                       
Query: 91  tgtcgaggaaaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattg--- 147
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 779 tgtcgaggagaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttg 720

                                                                       
Query: 148 gaaacattcacttattttgcataaaaggggaaatatactaggaacggtcgacaaaccgta 207
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 719 gaaacattcacttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgta 660

                                                                
Query: 208 agccgttatttaaaacctcggtcttggcaacgagcacagcgccgtgaatcaca 260
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 agccgttatttagaacctcggtcttggcaacgagcacagcgccgtgaatcaca 607



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>gb|AC149289.1| Solanum demissum chromosome 11 clone PGEC417F14 map MAP_LOC, complete
            sequence
          Length = 46168

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 70   catgaaaaatgccaaaagaac 90
            |||||||||||||||||||||
Sbjct: 8923 catgaaaaatgccaaaagaac 8943



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>gb|AC136471.1| Solanum demissum chromosome 11 BAC PGEC561 genomic sequence, complete
              sequence
          Length = 123428

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     catgaaaaatgccaaaagaac 90
              |||||||||||||||||||||
Sbjct: 120461 catgaaaaatgccaaaagaac 120481



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>emb|CR376838.7| Zebrafish DNA sequence from clone DKEY-15F23 in linkage group 14,
              complete sequence
          Length = 256006

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 96     aggaaaagtgtttccatcata 116
              |||||||||||||||||||||
Sbjct: 123706 aggaaaagtgtttccatcata 123726



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>emb|BX511027.20| Zebrafish DNA sequence from clone CH211-281P14 in linkage group 14,
              complete sequence
          Length = 198761

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 96     aggaaaagtgtttccatcata 116
              |||||||||||||||||||||
Sbjct: 143126 aggaaaagtgtttccatcata 143146



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>emb|BX649496.12| Zebrafish DNA sequence from clone CH211-212I24 in linkage group 18,
              complete sequence
          Length = 243552

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 96     aggaaaagtgtttccatcata 116
              |||||||||||||||||||||
Sbjct: 126307 aggaaaagtgtttccatcata 126287



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>gb|AC115719.10| Mus musculus chromosome 18, clone RP24-356J16, complete sequence
          Length = 177037

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    atgcatgaaaaatgccaaaa 86
             ||||||||||||||||||||
Sbjct: 93845 atgcatgaaaaatgccaaaa 93826



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>emb|CR376773.7| Zebrafish DNA sequence from clone CH211-23E22 in linkage group 17,
             complete sequence
          Length = 167088

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    aattatgcatgaaaaatgcc 82
             ||||||||||||||||||||
Sbjct: 66564 aattatgcatgaaaaatgcc 66545



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>emb|CR407585.14| Zebrafish DNA sequence from clone CH211-141O18 in linkage group 6,
              complete sequence
          Length = 164483

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     aaaagtgtttccatcatatt 118
              ||||||||||||||||||||
Sbjct: 104254 aaaagtgtttccatcatatt 104273



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>emb|BX005314.35| Zebrafish DNA sequence from clone CH211-155D24 in linkage group 6,
             complete sequence
          Length = 164188

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    ggaaaagtgtttccatcata 116
             ||||||||||||||||||||
Sbjct: 58020 ggaaaagtgtttccatcata 58039



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>emb|BX510331.13| Zebrafish DNA sequence from clone CH211-42B22 in linkage group 17,
              complete sequence
          Length = 150762

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     ggaaaagtgtttccatcata 116
              ||||||||||||||||||||
Sbjct: 102647 ggaaaagtgtttccatcata 102666



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>emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chromosome 13, complete
             sequence
          Length = 96045

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   ttcacttattttgcataaaa 173
             ||||||||||||||||||||
Sbjct: 29584 ttcacttattttgcataaaa 29603



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>emb|CR407558.22| Zebrafish DNA sequence from clone CH211-107M8 in linkage group 8,
              complete sequence
          Length = 175706

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     aaaagtgtttccatcatatt 118
              ||||||||||||||||||||
Sbjct: 107348 aaaagtgtttccatcatatt 107329



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>gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 genomic sequence, complete
              sequence
          Length = 134825

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 31     tcaaatcaaacatacaaaggatat 54
              ||||||||||||||||||| ||||
Sbjct: 130272 tcaaatcaaacatacaaagaatat 130295



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>gb|AC099040.10| Oryza sativa chromosome 10 BAC OSJNBa0004P12 genomic sequence, complete
              sequence
          Length = 137029

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 31     tcaaatcaaacatacaaaggatat 54
              ||||||||||||||||||| ||||
Sbjct: 104686 tcaaatcaaacatacaaagaatat 104663



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>emb|BX323009.6| Zebrafish DNA sequence from clone DKEYP-70D5 in linkage group 6,
             complete sequence
          Length = 51246

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    ggaaaagtgtttccatcata 116
             ||||||||||||||||||||
Sbjct: 35234 ggaaaagtgtttccatcata 35215



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 31      tcaaatcaaacatacaaaggatat 54
               ||||||||||||||||||| ||||
Sbjct: 7036535 tcaaatcaaacatacaaagaatat 7036512



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>gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 228073

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    acatacaaaggatatggtcc 59
             ||||||||||||||||||||
Sbjct: 98205 acatacaaaggatatggtcc 98186



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>gb|AC067721.22| Homo sapiens 3 BAC RP11-111F10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172953

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 98    gaaaagtgtttccatcatattcat 121
             ||||||| ||||||||||||||||
Sbjct: 36447 gaaaagtttttccatcatattcat 36424



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>emb|BX004996.8| Zebrafish DNA sequence from clone CH211-268F23 in linkage group 6,
             complete sequence
          Length = 167320

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    aattatgcatgaaaaatgcc 82
             ||||||||||||||||||||
Sbjct: 45548 aattatgcatgaaaaatgcc 45529



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>emb|AL954844.16| Zebrafish DNA sequence from clone XX-172G11, complete sequence
          Length = 103313

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    ggaaaagtgtttccatcata 116
             ||||||||||||||||||||
Sbjct: 16300 ggaaaagtgtttccatcata 16319



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>emb|CT025735.16| Mouse DNA sequence from clone RP24-338F19 on chromosome 12, complete
              sequence
          Length = 165439

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     aacaccttcatctttcaaat 36
              ||||||||||||||||||||
Sbjct: 140271 aacaccttcatctttcaaat 140290



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>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence
          Length = 149807

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    gaaacattcacttattttgc 167
              ||||||||||||||||||||
Sbjct: 101727 gaaacattcacttattttgc 101708



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 31      tcaaatcaaacatacaaaggatat 54
               ||||||||||||||||||| ||||
Sbjct: 7039822 tcaaatcaaacatacaaagaatat 7039799


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,552,683
Number of Sequences: 3902068
Number of extensions: 2552683
Number of successful extensions: 51556
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51492
Number of HSP's gapped (non-prelim): 63
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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