| Clone Name | rbast70d09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence Length = 779 Score = 291 bits (147), Expect = 6e-76 Identities = 167/173 (96%), Gaps = 3/173 (1%) Strand = Plus / Minus Query: 91 tgtcgaggaaaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattg--- 147 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 779 tgtcgaggagaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttg 720 Query: 148 gaaacattcacttattttgcataaaaggggaaatatactaggaacggtcgacaaaccgta 207 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 719 gaaacattcacttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgta 660 Query: 208 agccgttatttaaaacctcggtcttggcaacgagcacagcgccgtgaatcaca 260 |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 659 agccgttatttagaacctcggtcttggcaacgagcacagcgccgtgaatcaca 607
>gb|AC149289.1| Solanum demissum chromosome 11 clone PGEC417F14 map MAP_LOC, complete sequence Length = 46168 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 catgaaaaatgccaaaagaac 90 ||||||||||||||||||||| Sbjct: 8923 catgaaaaatgccaaaagaac 8943
>gb|AC136471.1| Solanum demissum chromosome 11 BAC PGEC561 genomic sequence, complete sequence Length = 123428 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 catgaaaaatgccaaaagaac 90 ||||||||||||||||||||| Sbjct: 120461 catgaaaaatgccaaaagaac 120481
>emb|CR376838.7| Zebrafish DNA sequence from clone DKEY-15F23 in linkage group 14, complete sequence Length = 256006 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 aggaaaagtgtttccatcata 116 ||||||||||||||||||||| Sbjct: 123706 aggaaaagtgtttccatcata 123726
>emb|BX511027.20| Zebrafish DNA sequence from clone CH211-281P14 in linkage group 14, complete sequence Length = 198761 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 aggaaaagtgtttccatcata 116 ||||||||||||||||||||| Sbjct: 143126 aggaaaagtgtttccatcata 143146
>emb|BX649496.12| Zebrafish DNA sequence from clone CH211-212I24 in linkage group 18, complete sequence Length = 243552 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 aggaaaagtgtttccatcata 116 ||||||||||||||||||||| Sbjct: 126307 aggaaaagtgtttccatcata 126287
>gb|AC115719.10| Mus musculus chromosome 18, clone RP24-356J16, complete sequence Length = 177037 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 atgcatgaaaaatgccaaaa 86 |||||||||||||||||||| Sbjct: 93845 atgcatgaaaaatgccaaaa 93826
>emb|CR376773.7| Zebrafish DNA sequence from clone CH211-23E22 in linkage group 17, complete sequence Length = 167088 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aattatgcatgaaaaatgcc 82 |||||||||||||||||||| Sbjct: 66564 aattatgcatgaaaaatgcc 66545
>emb|CR407585.14| Zebrafish DNA sequence from clone CH211-141O18 in linkage group 6, complete sequence Length = 164483 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 aaaagtgtttccatcatatt 118 |||||||||||||||||||| Sbjct: 104254 aaaagtgtttccatcatatt 104273
>emb|BX005314.35| Zebrafish DNA sequence from clone CH211-155D24 in linkage group 6, complete sequence Length = 164188 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 ggaaaagtgtttccatcata 116 |||||||||||||||||||| Sbjct: 58020 ggaaaagtgtttccatcata 58039
>emb|BX510331.13| Zebrafish DNA sequence from clone CH211-42B22 in linkage group 17, complete sequence Length = 150762 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 ggaaaagtgtttccatcata 116 |||||||||||||||||||| Sbjct: 102647 ggaaaagtgtttccatcata 102666
>emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chromosome 13, complete sequence Length = 96045 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 ttcacttattttgcataaaa 173 |||||||||||||||||||| Sbjct: 29584 ttcacttattttgcataaaa 29603
>emb|CR407558.22| Zebrafish DNA sequence from clone CH211-107M8 in linkage group 8, complete sequence Length = 175706 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 aaaagtgtttccatcatatt 118 |||||||||||||||||||| Sbjct: 107348 aaaagtgtttccatcatatt 107329
>gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 genomic sequence, complete sequence Length = 134825 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 tcaaatcaaacatacaaaggatat 54 ||||||||||||||||||| |||| Sbjct: 130272 tcaaatcaaacatacaaagaatat 130295
>gb|AC099040.10| Oryza sativa chromosome 10 BAC OSJNBa0004P12 genomic sequence, complete sequence Length = 137029 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 tcaaatcaaacatacaaaggatat 54 ||||||||||||||||||| |||| Sbjct: 104686 tcaaatcaaacatacaaagaatat 104663
>emb|BX323009.6| Zebrafish DNA sequence from clone DKEYP-70D5 in linkage group 6, complete sequence Length = 51246 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 ggaaaagtgtttccatcata 116 |||||||||||||||||||| Sbjct: 35234 ggaaaagtgtttccatcata 35215
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 tcaaatcaaacatacaaaggatat 54 ||||||||||||||||||| |||| Sbjct: 7036535 tcaaatcaaacatacaaagaatat 7036512
>gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 228073 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 acatacaaaggatatggtcc 59 |||||||||||||||||||| Sbjct: 98205 acatacaaaggatatggtcc 98186
>gb|AC067721.22| Homo sapiens 3 BAC RP11-111F10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172953 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 gaaaagtgtttccatcatattcat 121 ||||||| |||||||||||||||| Sbjct: 36447 gaaaagtttttccatcatattcat 36424
>emb|BX004996.8| Zebrafish DNA sequence from clone CH211-268F23 in linkage group 6, complete sequence Length = 167320 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aattatgcatgaaaaatgcc 82 |||||||||||||||||||| Sbjct: 45548 aattatgcatgaaaaatgcc 45529
>emb|AL954844.16| Zebrafish DNA sequence from clone XX-172G11, complete sequence Length = 103313 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 ggaaaagtgtttccatcata 116 |||||||||||||||||||| Sbjct: 16300 ggaaaagtgtttccatcata 16319
>emb|CT025735.16| Mouse DNA sequence from clone RP24-338F19 on chromosome 12, complete sequence Length = 165439 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 aacaccttcatctttcaaat 36 |||||||||||||||||||| Sbjct: 140271 aacaccttcatctttcaaat 140290
>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence Length = 149807 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gaaacattcacttattttgc 167 |||||||||||||||||||| Sbjct: 101727 gaaacattcacttattttgc 101708
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 tcaaatcaaacatacaaaggatat 54 ||||||||||||||||||| |||| Sbjct: 7039822 tcaaatcaaacatacaaagaatat 7039799 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,552,683 Number of Sequences: 3902068 Number of extensions: 2552683 Number of successful extensions: 51556 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51492 Number of HSP's gapped (non-prelim): 63 length of query: 260 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 238 effective length of database: 17,147,199,772 effective search space: 4081033545736 effective search space used: 4081033545736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)