ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast70d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469569.1| Oryza sativa (japonica cultivar-group), mRNA 163 3e-37
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 163 3e-37
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 163 3e-37
4gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 geno... 163 3e-37
5dbj|AK100267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 3e-37
6dbj|AK058421.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 3e-37
7dbj|AB047313.1| Oryza sativa (japonica cultivar-group) OsRAc1 mR... 163 3e-37
8gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence 133 3e-28
9emb|X16280.1|OSRAC1 Oryza sativa RAc1 mRNA for actin 115 7e-23
10emb|X79378.1|SVSOAC1 S.vulgare SoAc1 mRNA 105 6e-20
11gb|AY107106.1| Zea mays PCO106910 mRNA sequence 80 4e-12
12gb|BT018655.1| Zea mays clone EL01N0507B03.d mRNA sequence 64 2e-07
13gb|AC161509.8| Mus musculus chromosome 7, clone RP23-53O17, comp... 46 0.051
14gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, com... 46 0.051
15gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete seq... 42 0.80
16ref|XM_512090.1| PREDICTED: Pan troglodytes similar to Zinc fing... 40 3.2
17gb|AC139574.4| Mus musculus BAC clone RP23-477I8 from chromosome... 40 3.2
18ref|XM_957115.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.2
19ref|XM_324565.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.2
20gb|AC183987.3| Pan troglodytes BAC clone CH251-265I5 from chromo... 40 3.2
21ref|NM_032347.1| Homo sapiens zinc finger protein 397 (ZNF397), ... 40 3.2
22gb|AC147144.2| Pan troglodytes BAC clone CH251-278J22 from Y, co... 40 3.2
23gb|AC146182.3| Pan troglodytes BAC clone CH251-540L24 from Y, co... 40 3.2
24emb|AL512427.10| Human DNA sequence from clone RP11-325M4 on chr... 40 3.2
25emb|AL390237.9| Human DNA sequence from clone RP11-278J20 on chr... 40 3.2
26gb|AF533250.2| Homo sapiens zinc finger protein (ZNF397) mRNA, c... 40 3.2
27emb|Z99117.2|BSUB0014 Bacillus subtilis complete genome (section... 40 3.2
28dbj|BS000637.2| Pan troglodytes chromosome Y clone: PTBY-009K23,... 40 3.2
29dbj|BS000636.2| Pan troglodytes chromosome Y clone: PTBY-004L13,... 40 3.2
30dbj|D84432.1|BACJH642 Bacillus subtilis DNA, 283 Kb region conta... 40 3.2
31gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 3.2
32gb|AC006462.3|AC006462 Homo sapiens BAC clone RP11-389B19 from Y... 40 3.2
33gb|AC011815.7|AC011815 Homo sapiens chromosome , clone RP11-158H... 40 3.2
34gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, co... 40 3.2
35gb|BC006172.1| Homo sapiens zinc finger protein 397, mRNA (cDNA ... 40 3.2
36emb|AL079306.3|CNS00M8P Human chromosome 14 DNA sequence BAC R-2... 40 3.2
37gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols c... 40 3.2
38gb|AC132407.3| Mus musculus BAC clone RP23-343G12 from 8, comple... 40 3.2 
>ref|XM_469569.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1540

 Score =  163 bits (82), Expect = 3e-37
 Identities = 149/171 (87%), Gaps = 4/171 (2%)
 Strand = Plus / Minus

                                                                        
Query: 12   cctcaccaggcatctgattaaatttgattgaataaaccgaactcatgtgtccaaaatcac 71
            ||||| |||||||||||||||||||||    |||||||||||  ||||||||||||||||
Sbjct: 1460 cctcatcaggcatctgattaaatttga----ataaaccgaacatatgtgtccaaaatcac 1405

                                                                        
Query: 72   gagggacaagcacaagtagcaatagatattacagtctttgaataggaaaaaacggtaacc 131
             || || || |||| |||||||||| ||||||||||||||||||| | |||| | |||| 
Sbjct: 1404 aagtgagaaccacaggtagcaataggtattacagtctttgaatagaagaaaatgataaca 1345

                                                               
Query: 132  ggtaggccggccgaaaactttgtccacgctaacgaagaaacagcaacaaaa 182
            | ||||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 1344 gataggccggttgaaaactttgtccacgctaatgaagaaacagcaacaaaa 1294
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  163 bits (82), Expect = 3e-37
 Identities = 149/171 (87%), Gaps = 4/171 (2%)
 Strand = Plus / Minus

                                                                            
Query: 12       cctcaccaggcatctgattaaatttgattgaataaaccgaactcatgtgtccaaaatcac 71
                ||||| |||||||||||||||||||||    |||||||||||  ||||||||||||||||
Sbjct: 28782256 cctcatcaggcatctgattaaatttga----ataaaccgaacatatgtgtccaaaatcac 28782201

                                                                            
Query: 72       gagggacaagcacaagtagcaatagatattacagtctttgaataggaaaaaacggtaacc 131
                 || || || |||| |||||||||| ||||||||||||||||||| | |||| | |||| 
Sbjct: 28782200 aagtgagaaccacaggtagcaataggtattacagtctttgaatagaagaaaatgataaca 28782141

                                                                   
Query: 132      ggtaggccggccgaaaactttgtccacgctaacgaagaaacagcaacaaaa 182
                | ||||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 28782140 gataggccggttgaaaactttgtccacgctaatgaagaaacagcaacaaaa 28782090
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  163 bits (82), Expect = 3e-37
 Identities = 149/171 (87%), Gaps = 4/171 (2%)
 Strand = Plus / Minus

                                                                            
Query: 12       cctcaccaggcatctgattaaatttgattgaataaaccgaactcatgtgtccaaaatcac 71
                ||||| |||||||||||||||||||||    |||||||||||  ||||||||||||||||
Sbjct: 28873580 cctcatcaggcatctgattaaatttga----ataaaccgaacatatgtgtccaaaatcac 28873525

                                                                            
Query: 72       gagggacaagcacaagtagcaatagatattacagtctttgaataggaaaaaacggtaacc 131
                 || || || |||| |||||||||| ||||||||||||||||||| | |||| | |||| 
Sbjct: 28873524 aagtgagaaccacaggtagcaataggtattacagtctttgaatagaagaaaatgataaca 28873465

                                                                   
Query: 132      ggtaggccggccgaaaactttgtccacgctaacgaagaaacagcaacaaaa 182
                | ||||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 28873464 gataggccggttgaaaactttgtccacgctaatgaagaaacagcaacaaaa 28873414
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>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
             sequence
          Length = 147344

 Score =  163 bits (82), Expect = 3e-37
 Identities = 149/171 (87%), Gaps = 4/171 (2%)
 Strand = Plus / Minus

                                                                         
Query: 12    cctcaccaggcatctgattaaatttgattgaataaaccgaactcatgtgtccaaaatcac 71
             ||||| |||||||||||||||||||||    |||||||||||  ||||||||||||||||
Sbjct: 89237 cctcatcaggcatctgattaaatttga----ataaaccgaacatatgtgtccaaaatcac 89182

                                                                         
Query: 72    gagggacaagcacaagtagcaatagatattacagtctttgaataggaaaaaacggtaacc 131
              || || || |||| |||||||||| ||||||||||||||||||| | |||| | |||| 
Sbjct: 89181 aagtgagaaccacaggtagcaataggtattacagtctttgaatagaagaaaatgataaca 89122

                                                                
Query: 132   ggtaggccggccgaaaactttgtccacgctaacgaagaaacagcaacaaaa 182
             | ||||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 89121 gataggccggttgaaaactttgtccacgctaatgaagaaacagcaacaaaa 89071
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>dbj|AK100267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065A19, full
            insert sequence
          Length = 1546

 Score =  163 bits (82), Expect = 3e-37
 Identities = 149/171 (87%), Gaps = 4/171 (2%)
 Strand = Plus / Minus

                                                                        
Query: 12   cctcaccaggcatctgattaaatttgattgaataaaccgaactcatgtgtccaaaatcac 71
            ||||| |||||||||||||||||||||    |||||||||||  ||||||||||||||||
Sbjct: 1474 cctcatcaggcatctgattaaatttga----ataaaccgaacatatgtgtccaaaatcac 1419

                                                                        
Query: 72   gagggacaagcacaagtagcaatagatattacagtctttgaataggaaaaaacggtaacc 131
             || || || |||| |||||||||| ||||||||||||||||||| | |||| | |||| 
Sbjct: 1418 aagtgagaaccacaggtagcaataggtattacagtctttgaatagaagaaaatgataaca 1359

                                                               
Query: 132  ggtaggccggccgaaaactttgtccacgctaacgaagaaacagcaacaaaa 182
            | ||||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 1358 gataggccggttgaaaactttgtccacgctaatgaagaaacagcaacaaaa 1308
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>dbj|AK058421.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-D09, full
            insert sequence
          Length = 1508

 Score =  163 bits (82), Expect = 3e-37
 Identities = 149/171 (87%), Gaps = 4/171 (2%)
 Strand = Plus / Minus

                                                                        
Query: 12   cctcaccaggcatctgattaaatttgattgaataaaccgaactcatgtgtccaaaatcac 71
            ||||| |||||||||||||||||||||    |||||||||||  ||||||||||||||||
Sbjct: 1468 cctcatcaggcatctgattaaatttga----ataaaccgaacatatgtgtccaaaatcac 1413

                                                                        
Query: 72   gagggacaagcacaagtagcaatagatattacagtctttgaataggaaaaaacggtaacc 131
             || || || |||| |||||||||| ||||||||||||||||||| | |||| | |||| 
Sbjct: 1412 aagtgagaaccacaggtagcaataggtattacagtctttgaatagaagaaaatgataaca 1353

                                                               
Query: 132  ggtaggccggccgaaaactttgtccacgctaacgaagaaacagcaacaaaa 182
            | ||||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 1352 gataggccggttgaaaactttgtccacgctaatgaagaaacagcaacaaaa 1302
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>dbj|AB047313.1| Oryza sativa (japonica cultivar-group) OsRAc1 mRNA for actin,
            complete cds
          Length = 1556

 Score =  163 bits (82), Expect = 3e-37
 Identities = 149/171 (87%), Gaps = 4/171 (2%)
 Strand = Plus / Minus

                                                                        
Query: 12   cctcaccaggcatctgattaaatttgattgaataaaccgaactcatgtgtccaaaatcac 71
            ||||| |||||||||||||||||||||    |||||||||||  ||||||||||||||||
Sbjct: 1460 cctcatcaggcatctgattaaatttga----ataaaccgaacatatgtgtccaaaatcac 1405

                                                                        
Query: 72   gagggacaagcacaagtagcaatagatattacagtctttgaataggaaaaaacggtaacc 131
             || || || |||| |||||||||| ||||||||||||||||||| | |||| | |||| 
Sbjct: 1404 aagtgagaaccacaggtagcaataggtattacagtctttgaatagaagaaaatgataaca 1345

                                                               
Query: 132  ggtaggccggccgaaaactttgtccacgctaacgaagaaacagcaacaaaa 182
            | ||||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 1344 gataggccggttgaaaactttgtccacgctaatgaagaaacagcaacaaaa 1294
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>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence
          Length = 152439

 Score =  133 bits (67), Expect = 3e-28
 Identities = 152/179 (84%), Gaps = 6/179 (3%)
 Strand = Plus / Minus

                                                                         
Query: 6     tagtagcctcaccaggcatctgattaaatttgattgaataaaccgaactcatgtgtccaa 65
             ||||||||||| ||||||||| ||||||    |||||||| |||||||  ||||||||||
Sbjct: 13279 tagtagcctcatcaggcatctcattaaa----attgaatagaccgaacatatgtgtccaa 13224

                                                                         
Query: 66    aatcacgagggacaagcacaagtagcaatagatattacagtctt--tgaataggaaaaaa 123
             |||||| || || ||||| | |||||||||||||||||||||||  ||||||| | ||| 
Sbjct: 13223 aatcacaagtgagaagcataggtagcaatagatattacagtcttgatgaatagaagaaag 13164

                                                                        
Query: 124   cggtaaccggtaggccggccgaaaactttgtccacgctaacgaagaaacagcaacaaaa 182
             ||||  ||| ||| ||||| ||||||||||| || ||||| ||||||||||||||||||
Sbjct: 13163 cggtggccgatagaccggcagaaaactttgttcatgctaatgaagaaacagcaacaaaa 13105
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>emb|X16280.1|OSRAC1 Oryza sativa RAc1 mRNA for actin
          Length = 1460

 Score =  115 bits (58), Expect = 7e-23
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                        
Query: 61   tccaaaatcacgagggacaagcacaagtagcaatagatattacagtctttgaataggaaa 120
            ||||||||||| || || || |||| |||||||||| ||||||||||||||||||| | |
Sbjct: 1409 tccaaaatcacaagtgagaaccacaggtagcaataggtattacagtctttgaatagaaga 1350

                                                                        
Query: 121  aaacggtaaccggtaggccggccgaaaactttgtccacgctaacgaagaaacagcaacaa 180
            ||| | |||| | ||||||||  ||||||||||||||||||||  |||||||||||||||
Sbjct: 1349 aaatgataacagataggccggttgaaaactttgtccacgctaatcaagaaacagcaacaa 1290

              
Query: 181  aa 182
            ||
Sbjct: 1289 aa 1288
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>emb|X79378.1|SVSOAC1 S.vulgare SoAc1 mRNA
          Length = 1445

 Score =  105 bits (53), Expect = 6e-20
 Identities = 125/147 (85%), Gaps = 4/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 38   attgaataaaccgaactcatgtgtccaaaatcacgagggacaagcacaagtagcaataga 97
            |||||||| |||||||  |||||||||||||||  || || ||||| | |||||||||||
Sbjct: 1396 attgaatagaccgaacatatgtgtccaaaatca--agtgagaagcataggtagcaataga 1339

                                                                        
Query: 98   tattacagtctt--tgaataggaaaaaacggtaaccggtaggccggccgaaaactttgtc 155
            ||||||||||||  ||||||| | ||| ||||  ||| ||| ||||| ||||||||||| 
Sbjct: 1338 tattacagtcttgatgaatagaagaaagcggtggccgatagaccggcagaaaactttgtt 1279

                                       
Query: 156  cacgctaacgaagaaacagcaacaaaa 182
            || ||||| ||||||||||||||||||
Sbjct: 1278 catgctaatgaagaaacagcaacaaaa 1252
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>gb|AY107106.1| Zea mays PCO106910 mRNA sequence
          Length = 1839

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 85/99 (85%), Gaps = 2/99 (2%)
 Strand = Plus / Minus

                                                                        
Query: 87   gtagcaatagatattacagtctt--tgaataggaaaaaacggtaaccggtaggccggccg 144
            ||||||||||| |||||||||||  ||||||||| ||| |||   ||| ||| ||||| |
Sbjct: 1671 gtagcaatagacattacagtcttgatgaataggagaaagcggccgccgatagaccggcag 1612

                                                   
Query: 145  aaaactttgtccacgctaacgaagaaacagcaacaaaag 183
            |||||||||| || ||||| |||||||||||||||||||
Sbjct: 1611 aaaactttgttcatgctaatgaagaaacagcaacaaaag 1573
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>gb|BT018655.1| Zea mays clone EL01N0507B03.d mRNA sequence
          Length = 1378

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 80/95 (84%), Gaps = 2/95 (2%)
 Strand = Plus / Minus

                                                                        
Query: 91   caatagatattacagtctt--tgaataggaaaaaacggtaaccggtaggccggccgaaaa 148
            ||||||| |||||||||||  ||||||||| ||| |||   |||  || ||||| |||||
Sbjct: 1267 caatagacattacagtcttgatgaataggagaaagcggctgccgacagaccggcagaaaa 1208

                                               
Query: 149  ctttgtccacgctaacgaagaaacagcaacaaaag 183
            |||||| || ||||| |||||||||||||||||||
Sbjct: 1207 ctttgttcatgctaatgaagaaacagcaacaaaag 1173
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>gb|AC161509.8| Mus musculus chromosome 7, clone RP23-53O17, complete sequence
          Length = 196638

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 220   tcctcctggctttcattcttggg 242
             |||||||||||||||||||||||
Sbjct: 20654 tcctcctggctttcattcttggg 20676
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>gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, complete sequence
          Length = 196717

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 220    tcctcctggctttcattcttggg 242
              |||||||||||||||||||||||
Sbjct: 121550 tcctcctggctttcattcttggg 121572
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>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence
          Length = 117931

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 167   agaaacagcaacaaaagagggaggcgaag 195
             ||||||||||| |||||||||||| ||||
Sbjct: 86010 agaaacagcaaaaaaagagggaggtgaag 86038
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>ref|XM_512090.1| PREDICTED: Pan troglodytes similar to Zinc finger protein 397
           (LOC455370), mRNA
          Length = 1759

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 gaaacagcaacaaaagaggg 187
           ||||||||||||||||||||
Sbjct: 325 gaaacagcaacaaaagaggg 344
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>gb|AC139574.4| Mus musculus BAC clone RP23-477I8 from chromosome 15, complete
            sequence
          Length = 190948

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   agcctcaccaggcatctgat 29
            ||||||||||||||||||||
Sbjct: 8396 agcctcaccaggcatctgat 8377
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>ref|XM_957115.1| Neurospora crassa OR74A hypothetical protein (NCU05209.1) partial
           mRNA
          Length = 1065

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 183 gagggaggcgaagcggcaggaggg 206
           |||||||| |||||||||||||||
Sbjct: 942 gagggaggtgaagcggcaggaggg 965
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>ref|XM_324565.1| Neurospora crassa OR74A hypothetical protein (NCU05209.1) partial
           mRNA
          Length = 1065

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 183 gagggaggcgaagcggcaggaggg 206
           |||||||| |||||||||||||||
Sbjct: 942 gagggaggtgaagcggcaggaggg 965
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>gb|AC183987.3| Pan troglodytes BAC clone CH251-265I5 from chromosome 6, complete
              sequence
          Length = 162913

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 99     attacagtctttgaataggaaaaa 122
              ||||||||||||||| ||||||||
Sbjct: 101754 attacagtctttgaaaaggaaaaa 101731
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>ref|NM_032347.1| Homo sapiens zinc finger protein 397 (ZNF397), mRNA
          Length = 1439

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 gaaacagcaacaaaagaggg 187
           ||||||||||||||||||||
Sbjct: 706 gaaacagcaacaaaagaggg 725
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>gb|AC147144.2| Pan troglodytes BAC clone CH251-278J22 from Y, complete sequence
          Length = 178957

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   gaagaaacagcaacaaaaga 184
             ||||||||||||||||||||
Sbjct: 10932 gaagaaacagcaacaaaaga 10913
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>gb|AC146182.3| Pan troglodytes BAC clone CH251-540L24 from Y, complete sequence
          Length = 251472

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   gaagaaacagcaacaaaaga 184
             ||||||||||||||||||||
Sbjct: 82920 gaagaaacagcaacaaaaga 82939
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>emb|AL512427.10| Human DNA sequence from clone RP11-325M4 on chromosome 6 Contains a
             retinoblastoma binding protein 4 (RBBP4) pseudogene,
             complete sequence
          Length = 201657

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    attacagtctttgaataggaaaaa 122
             ||||||||||||||| ||||||||
Sbjct: 81628 attacagtctttgaaaaggaaaaa 81651
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>emb|AL390237.9| Human DNA sequence from clone RP11-278J20 on chromosome 6 Contains a
             retinoblastoma binding protein 4 (RBBP4) pseudogene and a
             KIAA0797 pseudogene, complete sequence
          Length = 140120

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    attacagtctttgaataggaaaaa 122
             ||||||||||||||| ||||||||
Sbjct: 56229 attacagtctttgaaaaggaaaaa 56252
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>gb|AF533250.2| Homo sapiens zinc finger protein (ZNF397) mRNA, complete cds
          Length = 2637

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 gaaacagcaacaaaagaggg 187
           ||||||||||||||||||||
Sbjct: 724 gaaacagcaacaaaagaggg 743
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>emb|Z99117.2|BSUB0014 Bacillus subtilis complete genome (section 14 of 21): from 2613658 to
             2812830
          Length = 199173

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   aaaagagggaggcgaagcgg 198
             ||||||||||||||||||||
Sbjct: 89256 aaaagagggaggcgaagcgg 89237
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>dbj|BS000637.2| Pan troglodytes chromosome Y clone: PTBY-009K23, complete sequence
          Length = 144454

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   gaagaaacagcaacaaaaga 184
             ||||||||||||||||||||
Sbjct: 19973 gaagaaacagcaacaaaaga 19954
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>dbj|BS000636.2| Pan troglodytes chromosome Y clone: PTBY-004L13, complete sequence
          Length = 154362

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   gaagaaacagcaacaaaaga 184
             ||||||||||||||||||||
Sbjct: 95847 gaagaaacagcaacaaaaga 95828
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>dbj|D84432.1|BACJH642 Bacillus subtilis DNA, 283 Kb region containing skin element
          Length = 282700

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   aaaagagggaggcgaagcgg 198
             ||||||||||||||||||||
Sbjct: 15924 aaaagagggaggcgaagcgg 15943
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 165      gaagaaacagcaacaaaaga 184
                ||||||||||||||||||||
Sbjct: 19636454 gaagaaacagcaacaaaaga 19636473
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>gb|AC006462.3|AC006462 Homo sapiens BAC clone RP11-389B19 from Y, complete sequence
          Length = 139994

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   gaagaaacagcaacaaaaga 184
             ||||||||||||||||||||
Sbjct: 82570 gaagaaacagcaacaaaaga 82551
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>gb|AC011815.7|AC011815 Homo sapiens chromosome , clone RP11-158H5, complete sequence
          Length = 156244

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    gaaacagcaacaaaagaggg 187
              ||||||||||||||||||||
Sbjct: 106143 gaaacagcaacaaaagaggg 106162
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>gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, complete sequence
          Length = 186051

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    agcctcaccaggcatctgat 29
             ||||||||||||||||||||
Sbjct: 25006 agcctcaccaggcatctgat 25025
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>gb|BC006172.1| Homo sapiens zinc finger protein 397, mRNA (cDNA clone MGC:13250
           IMAGE:4053312), complete cds
          Length = 1439

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 gaaacagcaacaaaagaggg 187
           ||||||||||||||||||||
Sbjct: 706 gaaacagcaacaaaagaggg 725
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>emb|AL079306.3|CNS00M8P Human chromosome 14 DNA sequence BAC R-216F9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184249

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     ctgattaaatttgattgaat 44
              ||||||||||||||||||||
Sbjct: 103979 ctgattaaatttgattgaat 103998
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>gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols complete genome
          Length = 1138011

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    ggaggcgaagcggcaggagg 205
              ||||||||||||||||||||
Sbjct: 530035 ggaggcgaagcggcaggagg 530054
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>gb|AC132407.3| Mus musculus BAC clone RP23-343G12 from 8, complete sequence
          Length = 205357

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   agaaacagcaacaaaagagg 186
             ||||||||||||||||||||
Sbjct: 94643 agaaacagcaacaaaagagg 94662


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,155,344
Number of Sequences: 3902068
Number of extensions: 2155344
Number of successful extensions: 42243
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42121
Number of HSP's gapped (non-prelim): 109
length of query: 246
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 224
effective length of database: 17,147,199,772
effective search space: 3840972748928
effective search space used: 3840972748928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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