>gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, complete sequence
          Length = 206482

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 132    ttccaccaatgataaatatgaat 154
              |||||||||||||||||||||||
Sbjct: 108155 ttccaccaatgataaatatgaat 108177

>gb|AC102274.20| Mus musculus chromosome 3, clone RP24-286L19, complete sequence
          Length = 183113

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 138 caatgataaatatgaatcattt 159
           ||||||||||||||||||||||
Sbjct: 590 caatgataaatatgaatcattt 569

>gb|AC162300.3| Mus musculus chromosome 3, clone RP23-224F23, complete sequence
          Length = 162774

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 138    caatgataaatatgaatcattt 159
              ||||||||||||||||||||||
Sbjct: 102148 caatgataaatatgaatcattt 102169

>emb|AL672056.4| Mouse DNA sequence from clone RP23-467O2 on chromosome X, complete
              sequence
          Length = 150695

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 140    atgataaatatgaatcatttcc 161
              ||||||||||||||||||||||
Sbjct: 126180 atgataaatatgaatcatttcc 126201

>gb|AC117787.8| Mus musculus chromosome 1, clone RP24-546N2, complete sequence
          Length = 203962

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 87     aataataatgtgatttcccca 107
              |||||||||||||||||||||
Sbjct: 154707 aataataatgtgatttcccca 154727

>gb|AY504728.1| Barnadesia caryophylla NADH dehydrogenase (ndhF) gene, partial cds;
           chloroplast
          Length = 664

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 37  agaaaaatacaagaacatata 57
           |||||||||||||||||||||
Sbjct: 530 agaaaaatacaagaacatata 510

>gb|AY504727.1| Dasyphyllum reticulatum NADH dehydrogenase (ndhF) gene, partial
           cds; chloroplast
          Length = 641

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 37  agaaaaatacaagaacatata 57
           |||||||||||||||||||||
Sbjct: 536 agaaaaatacaagaacatata 516

>gb|AC115860.9| Mus musculus chromosome 1, clone RP24-290C11, complete sequence
          Length = 240785

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     aataataatgtgatttcccca 107
              |||||||||||||||||||||
Sbjct: 203942 aataataatgtgatttcccca 203922

>gb|AC116404.12| Mus musculus chromosome 5, clone RP23-143M9, complete sequence
          Length = 211381

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    aataataatgtgatttcccca 107
             |||||||||||||||||||||
Sbjct: 11866 aataataatgtgatttcccca 11886

>gb|AC121878.1| Mus musculus BAC clone RP24-131C8 from 5, complete sequence
          Length = 163985

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 87     aataataatgtgatttcccca 107
              |||||||||||||||||||||
Sbjct: 143591 aataataatgtgatttcccca 143611

>gb|AC109143.19| Mus musculus chromosome 1, clone RP23-105D15, complete sequence
          Length = 211924

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 87    aataataatgtgatttcccca 107
             |||||||||||||||||||||
Sbjct: 44716 aataataatgtgatttcccca 44696

>gb|L39392.1|DPUCPNDHF Dasyphyllum argenteum chloroplast NADH dehydrogenase (ndhF) gene,
            complete cds
          Length = 2235

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 37   agaaaaatacaagaacatata 57
            |||||||||||||||||||||
Sbjct: 2190 agaaaaatacaagaacatata 2170

>gb|L39396.1|DOICPNDHF Doniophyton anomalum chloroplast NADH dehydrogenase (ndhF) gene,
            complete cds
          Length = 2235

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 37   agaaaaatacaagaacatata 57
            |||||||||||||||||||||
Sbjct: 2190 agaaaaatacaagaacatata 2170

>gb|L39393.1|CQRCPNDHF Chuquiraga jussieui chloroplast NADH dehydrogenase (ndhF) gene,
            complete cds
          Length = 2235

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 37   agaaaaatacaagaacatata 57
            |||||||||||||||||||||
Sbjct: 2190 agaaaaatacaagaacatata 2170

>gb|L39394.1|BRICPNDHF Barnadesia caryophylla chloroplast NADH dehydrogenase (ndhF) gene,
            complete cds
          Length = 2235

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 37   agaaaaatacaagaacatata 57
            |||||||||||||||||||||
Sbjct: 2190 agaaaaatacaagaacatata 2170

>gb|AY728222.1| Plethodon petraeus mitochondrion, complete genome
          Length = 19235

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 25   cactccaaacatagaaaaat 44
            ||||||||||||||||||||
Sbjct: 9388 cactccaaacatagaaaaat 9407

>gb|AY029520.1| Fiji disease virus RNA-dependent RNA polymerase gene, complete
          cds
          Length = 4532

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 36 tagaaaaatacaagaacata 55
          ||||||||||||||||||||
Sbjct: 78 tagaaaaatacaagaacata 97

>gb|AC100729.21| Mus musculus chromosome 19, clone RP24-286E16, complete sequence
          Length = 167242

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     atttccccaatgatacataagaat 122
              ||||||||||||||| ||||||||
Sbjct: 130177 atttccccaatgatagataagaat 130200

>gb|AC158149.3| Mus musculus chromosome 5, clone RP24-296L6, complete sequence
          Length = 155517

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aacatagaaaaatacaagaa 51
             ||||||||||||||||||||
Sbjct: 62066 aacatagaaaaatacaagaa 62085

>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence
          Length = 1050361

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 35    atagaaaaatacaagaacatatatatct 62
             ||||||||| |||| |||||||||||||
Sbjct: 69033 atagaaaaaaacaacaacatatatatct 69006

>dbj|AK126368.1| Homo sapiens cDNA FLJ44404 fis, clone TUTER2001387
          Length = 3359

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 84  cagaataataatgtgatttc 103
           ||||||||||||||||||||
Sbjct: 795 cagaataataatgtgatttc 814

>dbj|AK158687.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
            clone:K230054D19 product:unclassifiable, full insert
            sequence
          Length = 1229

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   aacatagaaaaatacaagaa 51
            ||||||||||||||||||||
Sbjct: 1071 aacatagaaaaatacaagaa 1090

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    gcggctttcggcgagctgat 356
              ||||||||||||||||||||
Sbjct: 346110 gcggctttcggcgagctgat 346091

>dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, section 68/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     cagaataataatgtgatttc 103
              ||||||||||||||||||||
Sbjct: 278628 cagaataataatgtgatttc 278609

>dbj|BS000201.1| Pan troglodytes chromosome 22 clone:PTB-047A24, map 22, complete
             sequences
          Length = 165662

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    cagaataataatgtgatttc 103
             ||||||||||||||||||||
Sbjct: 37031 cagaataataatgtgatttc 37012

>gb|AC111039.13| Mus musculus chromosome 5, clone RP24-463M5, complete sequence
          Length = 141949

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     aacatagaaaaatacaagaa 51
              ||||||||||||||||||||
Sbjct: 100985 aacatagaaaaatacaagaa 101004

>gb|AC122329.4| Mus musculus BAC clone RP23-341A12 from 19, complete sequence
          Length = 192481

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    atttccccaatgatacataagaat 122
             ||||||||||||||| ||||||||
Sbjct: 35971 atttccccaatgatagataagaat 35994

>dbj|AP000688.1| Homo sapiens genomic DNA, chromosome 21q22.2, PAC clone:P27A22,
             CBR1-HLCS region
          Length = 171703

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    cagaataataatgtgatttc 103
             ||||||||||||||||||||
Sbjct: 93814 cagaataataatgtgatttc 93795

>dbj|AB003151.1| Homo sapiens DNA, chromosome 21q22.2, PAC clone 25P16 complete
             sequence, encoding carbonyl reductase and carbonyl
             reductase 3 (complete cds)
          Length = 170529

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    cagaataataatgtgatttc 103
             ||||||||||||||||||||
Sbjct: 28636 cagaataataatgtgatttc 28617

>dbj|AP005204.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-340P19, complete
             sequence
          Length = 157244

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tccaaacatagaaaaataca 47
             ||||||||||||||||||||
Sbjct: 70005 tccaaacatagaaaaataca 69986


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,939,051
Number of Sequences: 3902068
Number of extensions: 3939051
Number of successful extensions: 86887
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86833
Number of HSP's gapped (non-prelim): 54
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)