ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast69e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
3dbj|AK073061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 94 4e-16
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 94 4e-16
6emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 94 4e-16
7emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa... 94 4e-16
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.006
9gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.006
10gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 50 0.006
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
12dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
13emb|AL672141.12| Mouse DNA sequence from clone RP23-219C18 on ch... 46 0.086
14dbj|AK032282.1| Mus musculus adult male olfactory brain cDNA, RI... 46 0.086
15dbj|AK051284.1| Mus musculus 12 days embryo spinal ganglion cDNA... 46 0.086
16gb|BC094320.1| Mus musculus heparan sulfate (glucosamine) 3-O-su... 46 0.086
17ref|NM_178870.2| Mus musculus heparan sulfate (glucosamine) 3-O-... 46 0.086
18gb|AF125457.1| Caenorhabditis elegans cosmid Y50F7A, complete se... 44 0.34
19gb|AE014302.1| Homo sapiens chromosome 13q34 schizophrenia regio... 44 0.34
20gb|AF016660.3| Caenorhabditis elegans cosmid F53A10, complete se... 44 0.34
21emb|AL139800.10| Human DNA sequence from clone RP11-219L22 on ch... 44 0.34
22gb|AC009567.8|AC009567 Homo sapiens chromosome 4, clone RP11-21G... 44 0.34
23gb|BT012791.1| Lycopersicon esculentum clone 113786R, mRNA sequence 42 1.3
24ref|XM_744816.1| Aspergillus fumigatus Af293 C6 transcription fa... 42 1.3
25ref|XM_719318.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 1.3
26gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 42 1.3
27gb|AC154240.2| Mus musculus BAC clone RP24-170E23 from chromosom... 40 5.3
28gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome... 40 5.3
29gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, ... 40 5.3
30emb|Z29117.1|CEC48B4 Caenorhabditis elegans Cosmid C48B4, comple... 40 5.3
31emb|BX640401.2| Chicken DNA sequence from clone WAG-106I4, compl... 40 5.3
32ref|XM_723136.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 5.3
33ref|XM_719824.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 5.3
34gb|AC006041.2| Homo sapiens BAC clone RP11-491B3 from 7, complet... 40 5.3
35gb|AE017245.1| Mycoplasma synoviae 53, complete genome 40 5.3
36emb|AL353072.8| Human DNA sequence from clone RP11-489C13 on chr... 40 5.3
37gb|AY248742.1| Lycopersicon esculentum omega-3 fatty acid desatu... 40 5.3
38emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, OR... 40 5.3
39gb|AC027489.8| Homo sapiens chromosome , clone RP11-453M23, comp... 40 5.3
40dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
41gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.3
42gb|AC160137.2| Mus musculus BAC clone RP23-136A1 from chromosome... 40 5.3
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
44gb|AC106888.2| Homo sapiens BAC clone CTD-2006P5 from 4, complet... 40 5.3
45gb|AC083835.5|AC083835 Arabidopsis thaliana chromosome 1 BAC F2G... 40 5.3
46gb|AC149602.1| Mus musculus BAC clone RP24-116G21 from chromosom... 40 5.3
47dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisu... 40 5.3
48dbj|AB016893.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.3
49gb|AC130661.14| Mus musculus chromosome 12, clone RP23-337K17, c... 40 5.3
50gb|AC004066.1|AC004066 Homo sapiens chromosome 4 clone B353C18 m... 40 5.3
51gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.3
52gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome 40 5.3
53emb|CT025603.11| Mouse DNA sequence from clone RP24-246F8 on chr... 40 5.3
54emb|Z95164.1|GGZ95164 Crocuta crocuta microsatellite DNA (LEI026... 40 5.3
55emb|AL807831.6| Mouse DNA sequence from clone RP23-146I17 on chr... 40 5.3
56emb|AL805895.4| Mouse DNA sequence from clone RP23-64K11 on chro... 40 5.3 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 107/127 (84%)
 Strand = Plus / Minus

                                                                          
Query: 254    cggcgccgccctccggtccaggccgaatctcctcgagctgccgcagcacctcccgcgcct 313
              |||||||||||||||| || ||||  |||| |||||||||||| ||||||||||| || |
Sbjct: 420248 cggcgccgccctccggccccggcctgatctgctcgagctgccggagcacctcccgggcat 420189

                                                                          
Query: 314    ccggcctggccgacggcgagacctcgacgcactgcagcgccagcttgagcgtgtccatga 373
              | || ||  ||||||||||    || ||||| |||||||||||||| |||||||||| ||
Sbjct: 420188 caggtctcaccgacggcgactggtccacgcagtgcagcgccagcttcagcgtgtccacga 420129

                     
Query: 374    gctcgtc 380
              |||||||
Sbjct: 420128 gctcgtc 420122



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     aataatatttgcctatacaa 78
              ||||||||||||||||||||
Sbjct: 420541 aataatatttgcctatacaa 420522
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 107/127 (84%)
 Strand = Plus / Minus

                                                                          
Query: 254    cggcgccgccctccggtccaggccgaatctcctcgagctgccgcagcacctcccgcgcct 313
              |||||||||||||||| || ||||  |||| |||||||||||| ||||||||||| || |
Sbjct: 361294 cggcgccgccctccggccccggcctgatctgctcgagctgccggagcacctcccgggcat 361235

                                                                          
Query: 314    ccggcctggccgacggcgagacctcgacgcactgcagcgccagcttgagcgtgtccatga 373
              | || ||  ||||||||||    || ||||| |||||||||||||| |||||||||| ||
Sbjct: 361234 caggtctcaccgacggcgactggtccacgcagtgcagcgccagcttcagcgtgtccacga 361175

                     
Query: 374    gctcgtc 380
              |||||||
Sbjct: 361174 gctcgtc 361168



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     aataatatttgcctatacaa 78
              ||||||||||||||||||||
Sbjct: 361588 aataatatttgcctatacaa 361569
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>dbj|AK073061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033021A01, full
            insert sequence
          Length = 2391

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 107/127 (84%)
 Strand = Plus / Minus

                                                                        
Query: 254  cggcgccgccctccggtccaggccgaatctcctcgagctgccgcagcacctcccgcgcct 313
            |||||||||||||||| || ||||  |||| |||||||||||| ||||||||||| || |
Sbjct: 2057 cggcgccgccctccggccccggcctgatctgctcgagctgccggagcacctcccgggcat 1998

                                                                        
Query: 314  ccggcctggccgacggcgagacctcgacgcactgcagcgccagcttgagcgtgtccatga 373
            | || ||  ||||||||||    || ||||| |||||||||||||| |||||||||| ||
Sbjct: 1997 caggtctcaccgacggcgactggtccacgcagtgcagcgccagcttcagcgtgtccacga 1938

                   
Query: 374  gctcgtc 380
            |||||||
Sbjct: 1937 gctcgtc 1931



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   aataatatttgcctatacaa 78
            ||||||||||||||||||||
Sbjct: 2351 aataatatttgcctatacaa 2332
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 107/127 (84%)
 Strand = Plus / Minus

                                                                          
Query: 254    cggcgccgccctccggtccaggccgaatctcctcgagctgccgcagcacctcccgcgcct 313
              |||||||||||||||| || ||||  |||| |||||||||||| ||||||||||| || |
Sbjct: 361294 cggcgccgccctccggccccggcctgatctgctcgagctgccggagcacctcccgggcat 361235

                                                                          
Query: 314    ccggcctggccgacggcgagacctcgacgcactgcagcgccagcttgagcgtgtccatga 373
              | || ||  ||||||||||    || ||||| |||||||||||||| |||||||||| ||
Sbjct: 361234 caggtctcaccgacggcgactggtccacgcagtgcagcgccagcttcagcgtgtccacga 361175

                     
Query: 374    gctcgtc 380
              |||||||
Sbjct: 361174 gctcgtc 361168



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     aataatatttgcctatacaa 78
              ||||||||||||||||||||
Sbjct: 361588 aataatatttgcctatacaa 361569
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 107/127 (84%)
 Strand = Plus / Minus

                                                                          
Query: 254    cggcgccgccctccggtccaggccgaatctcctcgagctgccgcagcacctcccgcgcct 313
              |||||||||||||||| || ||||  |||| |||||||||||| ||||||||||| || |
Sbjct: 420248 cggcgccgccctccggccccggcctgatctgctcgagctgccggagcacctcccgggcat 420189

                                                                          
Query: 314    ccggcctggccgacggcgagacctcgacgcactgcagcgccagcttgagcgtgtccatga 373
              | || ||  ||||||||||    || ||||| |||||||||||||| |||||||||| ||
Sbjct: 420188 caggtctcaccgacggcgactggtccacgcagtgcagcgccagcttcagcgtgtccacga 420129

                     
Query: 374    gctcgtc 380
              |||||||
Sbjct: 420128 gctcgtc 420122



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     aataatatttgcctatacaa 78
              ||||||||||||||||||||
Sbjct: 420541 aataatatttgcctatacaa 420522
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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 107/127 (84%)
 Strand = Plus / Minus

                                                                         
Query: 254   cggcgccgccctccggtccaggccgaatctcctcgagctgccgcagcacctcccgcgcct 313
             |||||||||||||||| || ||||  |||| |||||||||||| ||||||||||| || |
Sbjct: 68612 cggcgccgccctccggccccggcctgatctgctcgagctgccggagcacctcccgggcat 68553

                                                                         
Query: 314   ccggcctggccgacggcgagacctcgacgcactgcagcgccagcttgagcgtgtccatga 373
             | || ||  ||||||||||    || ||||| |||||||||||||| |||||||||| ||
Sbjct: 68552 caggtctcaccgacggcgactggtccacgcagtgcagcgccagcttcagcgtgtccacga 68493

                    
Query: 374   gctcgtc 380
             |||||||
Sbjct: 68492 gctcgtc 68486



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    aataatatttgcctatacaa 78
             ||||||||||||||||||||
Sbjct: 68906 aataatatttgcctatacaa 68887
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>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141089

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 107/127 (84%)
 Strand = Plus / Plus

                                                                          
Query: 254    cggcgccgccctccggtccaggccgaatctcctcgagctgccgcagcacctcccgcgcct 313
              |||||||||||||||| || ||||  |||| |||||||||||| ||||||||||| || |
Sbjct: 126524 cggcgccgccctccggccccggcctgatctgctcgagctgccggagcacctcccgggcat 126583

                                                                          
Query: 314    ccggcctggccgacggcgagacctcgacgcactgcagcgccagcttgagcgtgtccatga 373
              | || ||  ||||||||||    || ||||| |||||||||||||| |||||||||| ||
Sbjct: 126584 caggtctcaccgacggcgactggtccacgcagtgcagcgccagcttcagcgtgtccacga 126643

                     
Query: 374    gctcgtc 380
              |||||||
Sbjct: 126644 gctcgtc 126650



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     aataatatttgcctatacaa 78
              ||||||||||||||||||||
Sbjct: 126231 aataatatttgcctatacaa 126250
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 337      tcgacgcactgcagcgccagcttgagcgt 365
                |||||||| ||||||||||||||||||||
Sbjct: 10412014 tcgacgcagtgcagcgccagcttgagcgt 10411986
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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 337   tcgacgcactgcagcgccagcttgagcgt 365
             |||||||| ||||||||||||||||||||
Sbjct: 68567 tcgacgcagtgcagcgccagcttgagcgt 68539
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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03,
              from chromosome 3, complete sequence
          Length = 125800

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 337    tcgacgcactgcagcgccagcttgagcgt 365
              |||||||| ||||||||||||||||||||
Sbjct: 125480 tcgacgcagtgcagcgccagcttgagcgt 125452
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 337      tcgacgcactgcagcgccagcttgagcgt 365
                |||||||| ||||||||||||||||||||
Sbjct: 10410115 tcgacgcagtgcagcgccagcttgagcgt 10410087
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>dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B05, full
            insert sequence
          Length = 1650

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 337  tcgacgcactgcagcgccagcttgagcgt 365
            |||||||| ||||||||||||||||||||
Sbjct: 1227 tcgacgcagtgcagcgccagcttgagcgt 1199
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>emb|AL672141.12| Mouse DNA sequence from clone RP23-219C18 on chromosome 11 Contains the
             3' end of the Hs3st3a gene for heparan sulfate
             (glucosamine) 3-O-sulfotransferase 3A and a CpG island,
             complete sequence
          Length = 153658

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 289   agctgccgcagcacctcccgcgc 311
             |||||||||||||||||||||||
Sbjct: 71388 agctgccgcagcacctcccgcgc 71366
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>dbj|AK032282.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
           enriched library, clone:6430515F19 product:heparan
           sulfate (glucosamine) 3-O-sulfotransferase 3A, full
           insert sequence
          Length = 2901

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 289 agctgccgcagcacctcccgcgc 311
           |||||||||||||||||||||||
Sbjct: 812 agctgccgcagcacctcccgcgc 790
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>dbj|AK051284.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130028M10 product:similar to
            HEPARAN SULFATE D-GLUCOSAMINYL 3-O-SULFOTRANSFERASE-3A
            (EC 2.8.2.23) [Homo sapiens], full insert sequence
          Length = 3927

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 289  agctgccgcagcacctcccgcgc 311
            |||||||||||||||||||||||
Sbjct: 1845 agctgccgcagcacctcccgcgc 1823
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>gb|BC094320.1| Mus musculus heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1,
            mRNA (cDNA clone MGC:106586 IMAGE:6400013), complete cds
          Length = 4012

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 289  agctgccgcagcacctcccgcgc 311
            |||||||||||||||||||||||
Sbjct: 1898 agctgccgcagcacctcccgcgc 1876
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>ref|NM_178870.2| Mus musculus heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
            (Hs3st3a1), mRNA
          Length = 3927

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 289  agctgccgcagcacctcccgcgc 311
            |||||||||||||||||||||||
Sbjct: 1845 agctgccgcagcacctcccgcgc 1823
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>gb|AF125457.1| Caenorhabditis elegans cosmid Y50F7A, complete sequence
          Length = 31933

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 125   tgaatcaaaaaactatcaaaacaact 150
             |||||||||||||||| |||||||||
Sbjct: 29850 tgaatcaaaaaactatgaaaacaact 29825
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>gb|AE014302.1| Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 2 of
              3 of the complete sequence
          Length = 277196

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 87     gaaaatgaaaaagaagggtgat 108
              ||||||||||||||||||||||
Sbjct: 130571 gaaaatgaaaaagaagggtgat 130592
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>gb|AF016660.3| Caenorhabditis elegans cosmid F53A10, complete sequence
          Length = 33272

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 125   tgaatcaaaaaactatcaaaacaact 150
             |||||||||||||||| |||||||||
Sbjct: 13717 tgaatcaaaaaactatgaaaacaact 13692
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>emb|AL139800.10| Human DNA sequence from clone RP11-219L22 on chromosome 13 Contains
            part of the ITGBL1 gene for integrin, beta-like 1 (with
            EGF-like repeat domains), complete sequence
          Length = 99173

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 87   gaaaatgaaaaagaagggtgat 108
            ||||||||||||||||||||||
Sbjct: 4399 gaaaatgaaaaagaagggtgat 4420
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>gb|AC009567.8|AC009567 Homo sapiens chromosome 4, clone RP11-21G20, complete sequence
          Length = 164823

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 70    cctatacaaactatatagaaaa 91
             ||||||||||||||||||||||
Sbjct: 55645 cctatacaaactatatagaaaa 55624
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>gb|BT012791.1| Lycopersicon esculentum clone 113786R, mRNA sequence
          Length = 1552

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 153  acctcaatgtaacaatcttctttcc 177
            |||| ||||||||||||||||||||
Sbjct: 1023 acctgaatgtaacaatcttctttcc 1047
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>ref|XM_744816.1| Aspergillus fumigatus Af293 C6 transcription factor (Afu1g01590)
            partial mRNA
          Length = 2517

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 285  ctcgagctgccgcagcacctc 305
            |||||||||||||||||||||
Sbjct: 1881 ctcgagctgccgcagcacctc 1861
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>ref|XM_719318.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04157)
           partial mRNA
          Length = 1032

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 72  tatacaaactatatagaaaat 92
           |||||||||||||||||||||
Sbjct: 388 tatacaaactatatagaaaat 408
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 308     gcgcctccggcctggccgacggcga 332
               |||||||||||||||||| ||||||
Sbjct: 2491942 gcgcctccggcctggccggcggcga 2491918
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>gb|AC154240.2| Mus musculus BAC clone RP24-170E23 from chromosome 12, complete sequence
          Length = 160191

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 78     aactatatagaaaatgaaaaagaa 101
              |||||||||||||| |||||||||
Sbjct: 142646 aactatatagaaaaagaaaaagaa 142669
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>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete
            sequence
          Length = 176667

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  ccttcaacttataaatgaat 129
            ||||||||||||||||||||
Sbjct: 8288 ccttcaacttataaatgaat 8269
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>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
          Length = 182756

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cacctcccgcgcctccggcc 319
             ||||||||||||||||||||
Sbjct: 20318 cacctcccgcgcctccggcc 20299
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>emb|Z29117.1|CEC48B4 Caenorhabditis elegans Cosmid C48B4, complete sequence
          Length = 41151

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 118   ttataaatgaatcaaaaaactatcaaaa 145
             |||||||||||  |||||||||||||||
Sbjct: 26268 ttataaatgaaagaaaaaactatcaaaa 26241
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>emb|BX640401.2| Chicken DNA sequence from clone WAG-106I4, complete sequence
          Length = 104753

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    aactatatagaaaatgaaaa 97
             ||||||||||||||||||||
Sbjct: 83822 aactatatagaaaatgaaaa 83803
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>ref|XM_723136.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07381)
           partial mRNA
          Length = 2214

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  tatagaaaatgaaaaagaag 102
           ||||||||||||||||||||
Sbjct: 137 tatagaaaatgaaaaagaag 156
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>ref|XM_719824.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04595)
            partial mRNA
          Length = 3147

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   tatagaaaatgaaaaagaag 102
            ||||||||||||||||||||
Sbjct: 2694 tatagaaaatgaaaaagaag 2713
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>gb|AC006041.2| Homo sapiens BAC clone RP11-491B3 from 7, complete sequence
          Length = 86758

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   atatagaaaatgaaaaagaa 101
            ||||||||||||||||||||
Sbjct: 7895 atatagaaaatgaaaaagaa 7876
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>gb|AE017245.1| Mycoplasma synoviae 53, complete genome
          Length = 799476

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     aactatatagaaaatgaaaa 97
              ||||||||||||||||||||
Sbjct: 383783 aactatatagaaaatgaaaa 383802
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>emb|AL353072.8| Human DNA sequence from clone RP11-489C13 on chromosome 1q31.1-31.3
             Contains a translocase of inner mitochondrial membrane 17
             homolog A (yeast) (TIMM17A) pseudogene, complete sequence
          Length = 171682

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    tatagaaaatgaaaaagaag 102
             ||||||||||||||||||||
Sbjct: 67435 tatagaaaatgaaaaagaag 67454
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>gb|AY248742.1| Lycopersicon esculentum omega-3 fatty acid desaturase gene, complete
             cds; nuclear gene for chloroplast product
          Length = 43170

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   atcttctttcctctctaatc 186
             ||||||||||||||||||||
Sbjct: 37414 atcttctttcctctctaatc 37433
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>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12,
             ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3,
             tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene,
             tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19,
             ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An
             d48
          Length = 82868

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 286   tcgagctgccgcagcacctcccgc 309
             ||||||||||||||| ||||||||
Sbjct: 36672 tcgagctgccgcagcgcctcccgc 36649
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>gb|AC027489.8| Homo sapiens chromosome , clone RP11-453M23, complete sequence
          Length = 189706

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   aaactatcaaaacaactaaa 153
             ||||||||||||||||||||
Sbjct: 32510 aaactatcaaaacaactaaa 32529
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>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0004G10
          Length = 150379

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cacctcccgcgcctccggcc 319
             ||||||||||||||||||||
Sbjct: 52856 cacctcccgcgcctccggcc 52837
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   cctggccgacggcgagacct 337
             ||||||||||||||||||||
Sbjct: 55255 cctggccgacggcgagacct 55236
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>gb|AC160137.2| Mus musculus BAC clone RP23-136A1 from chromosome 9, complete sequence
          Length = 241917

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   ataaatgaatcaaaaaacta 139
             ||||||||||||||||||||
Sbjct: 84061 ataaatgaatcaaaaaacta 84080
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 300     cacctcccgcgcctccggcc 319
               ||||||||||||||||||||
Sbjct: 8056205 cacctcccgcgcctccggcc 8056186
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>gb|AC106888.2| Homo sapiens BAC clone CTD-2006P5 from 4, complete sequence
          Length = 90527

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   tcttctttcctctctaatcc 187
             ||||||||||||||||||||
Sbjct: 85445 tcttctttcctctctaatcc 85464
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>gb|AC083835.5|AC083835 Arabidopsis thaliana chromosome 1 BAC F2G19 genomic sequence,
            complete sequence
          Length = 133379

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  ctttcctctctaatccatcc 191
            ||||||||||||||||||||
Sbjct: 3433 ctttcctctctaatccatcc 3414
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>gb|AC149602.1| Mus musculus BAC clone RP24-116G21 from chromosome 8, complete sequence
          Length = 158424

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   ccttcaacttataaatgaat 129
             ||||||||||||||||||||
Sbjct: 34420 ccttcaacttataaatgaat 34439
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>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete
              sequence
          Length = 640681

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     agtggcgcaaataatatttg 69
              ||||||||||||||||||||
Sbjct: 592966 agtggcgcaaataatatttg 592947
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>dbj|AB016893.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYH9
          Length = 82390

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   tcaaaaaactatcaaaacaa 148
             ||||||||||||||||||||
Sbjct: 17355 tcaaaaaactatcaaaacaa 17374
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>gb|AC130661.14| Mus musculus chromosome 12, clone RP23-337K17, complete sequence
          Length = 199656

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 78     aactatatagaaaatgaaaaagaa 101
              |||||||||||||| |||||||||
Sbjct: 166224 aactatatagaaaaagaaaaagaa 166201
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>gb|AC004066.1|AC004066 Homo sapiens chromosome 4 clone B353C18 map 4q25, complete sequence
          Length = 139877

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 168  tcttctttcctctctaatcc 187
            ||||||||||||||||||||
Sbjct: 3679 tcttctttcctctctaatcc 3698
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 303     ctcccgcgcctccggcctgg 322
               ||||||||||||||||||||
Sbjct: 2114552 ctcccgcgcctccggcctgg 2114533
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>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    atagaaaatgaaaaagaagg 103
             ||||||||||||||||||||
Sbjct: 11261 atagaaaatgaaaaagaagg 11242
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>emb|CT025603.11| Mouse DNA sequence from clone RP24-246F8 on chromosome 13, complete
              sequence
          Length = 153535

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    ttctttcctctctaatccat 189
              ||||||||||||||||||||
Sbjct: 105090 ttctttcctctctaatccat 105071
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>emb|Z95164.1|GGZ95164 Crocuta crocuta microsatellite DNA (LEI0268 (= EC03C12))
          Length = 293

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 31 aattcctgacagagattcta 50
          ||||||||||||||||||||
Sbjct: 47 aattcctgacagagattcta 28
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>emb|AL807831.6| Mouse DNA sequence from clone RP23-146I17 on chromosome X, complete
             sequence
          Length = 203118

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     aaatcaataatgtttatatg 23
             ||||||||||||||||||||
Sbjct: 55083 aaatcaataatgtttatatg 55064
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>emb|AL805895.4| Mouse DNA sequence from clone RP23-64K11 on chromosome 4, complete
             sequence
          Length = 154245

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   tcaaaacaactaaacctcaa 159
             ||||||||||||||||||||
Sbjct: 94646 tcaaaacaactaaacctcaa 94665


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,416,376
Number of Sequences: 3902068
Number of extensions: 4416376
Number of successful extensions: 110750
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110051
Number of HSP's gapped (non-prelim): 692
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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