ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast69e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTH7_DROME (Q9VSE7) Probable G-protein coupled receptor Mth-like... 29 3.3
2TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Ta... 28 4.3
3TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (... 28 4.3
4SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Tra... 27 9.7
5SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Tra... 27 9.7
6Y1812_THETN (Q8R918) Hypothetical RNA methyltransferase TTE1812 ... 27 9.7

>MTH7_DROME (Q9VSE7) Probable G-protein coupled receptor Mth-like 7 precursor|
           (Protein methuselah-like 7)
          Length = 491

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 123 CYCTFRECLRVCDPHRSWSWREELSRGLKD 212
           C C+ R C+R+C P +++    +   GLK+
Sbjct: 80  CVCSVRPCIRICCPAKNFLANGKCDDGLKE 109



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>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)|
           (Trio-associated repeat on actin)
          Length = 2365

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 105 GSTELQCYCTFRECLRVCDPHRSWSW 182
           G++  QC CT +E LR   PHRS  W
Sbjct: 865 GTSSSQC-CTQKENLRPSSPHRSTQW 889



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>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)|
           (3-dehydrosphinganine reductase) (KDS reductase)
          Length = 969

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -3

Query: 313 LQRSGGERVTSSTDEQDQGALERRAPRQEDVVVESFKPRLNSSLQLQDRCGSHTLKHSRN 134
           LQ+   ++      +Q Q      +P Q+   V    P+L + LQLQ +       HS +
Sbjct: 464 LQQQQQQQQHQQHQQQQQNLATNLSPDQDPNHVNQIHPQLQAQLQLQHQQAQEHDLHSHH 523

Query: 133 VQ*H 122
           +Q H
Sbjct: 524 LQQH 527



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>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional|
           corepressor Sin3a) (Histone deacetylase complex subunit
           Sin3a)
          Length = 1282

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 334 WAKEFFNLQRSGGERVTSSTDEQDQGALERRAPRQEDVVVE--SFKPRLNSSLQL 176
           + KE  N + +GG    + T+++    + R    QED++ E   F P  NSS+ L
Sbjct: 335 YQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANSSVLL 389



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>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional|
           corepressor Sin3a) (Histone deacetylase complex subunit
           Sin3a)
          Length = 1273

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 334 WAKEFFNLQRSGGERVTSSTDEQDQGALERRAPRQEDVVVE--SFKPRLNSSLQL 176
           + KE  N + +GG    + T+++    + R    QED++ E   F P  NSS+ L
Sbjct: 335 YQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANSSVLL 389



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>Y1812_THETN (Q8R918) Hypothetical RNA methyltransferase TTE1812 (EC 2.1.1.-)|
          Length = 452

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 298 GERVTSSTDEQDQGALERRAPRQEDVVVESFKPRLNSSLQLQDRCGSHTLKH 143
           GERV    +E  +  L+    +    ++E  + R+N   Q  DRCG  +L+H
Sbjct: 40  GERVIVEIEEVHKNYLKGYTVK----ILEKSQHRVNPLCQYADRCGGCSLQH 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,769,601
Number of Sequences: 219361
Number of extensions: 471117
Number of successful extensions: 1562
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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