>PRIA_TREPA (O83258) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 657

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
 Frame = -3

Query: 209 YSFPCCACAVPSMWR---GAMNCAAC 141
           Y+  C  CAVP  W    GAM C  C
Sbjct: 371 YTLCCTQCAVPLTWHKRVGAMQCHYC 396

>NTRK2_CHICK (Q91987) BDNF/NT-3 growth factors receptor precursor (EC 2.7.10.1)|
           (Neurotrophic tyrosine kinase receptor type 2) (TrkB
           tyrosine kinase) (Trk-B)
          Length = 818

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 188 CAVPSMWRGAMNCAACYHYS*WR 120
           C V   WRGA+ C A    S WR
Sbjct: 20  CLVLGCWRGALGCPASCRCSSWR 42

>CFC1_MOUSE (P97766) Cryptic protein precursor|
          Length = 202

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +2

Query: 116 DCATNYSGSMQRNSWRLATC--SAPH--KHNTGNYTLLE*LVSSYDDVRHEPQCTVHSLL 283
           DC     G+   +S RL  C  SA +   H T ++  L+  +SS    R   +C++ SLL
Sbjct: 130 DCGALGHGAWTLHSCRLCRCIFSALYCLPHQTFSHCDLKSFLSS--GARGSRECSIPSLL 187

Query: 284 LAVIC 298
           L V+C
Sbjct: 188 LLVLC 192


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,739,614
Number of Sequences: 219361
Number of extensions: 638965
Number of successful extensions: 1422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)