ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast69b02 |
|---|---|
| Clone Library Name | barley_pub |
>BGLX_SALTY (Q56078) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (T-cell inhibitor) Length = 765 Score = 47.0 bits (110), Expect = 1e-05 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 22/77 (28%) Frame = -2 Query: 303 WLPGSEG-QGVADVLFGDYGFSGKLARTWFKSADQLP-----MNVG-------------- 184 W G+EG +ADVLFGDY SGKL ++ +S Q+P +N G Sbjct: 571 WFAGTEGGNAIADVLFGDYNPSGKLPISFPRSVGQIPVYYSHLNTGRPYNPEKPNKYTSR 630 Query: 183 --DKHYDPLFPFGFGLT 139 D+ PL+PFG+GL+ Sbjct: 631 YFDEANGPLYPFGYGLS 647
>BGLX_ECOLI (P33363) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 765 Score = 44.7 bits (104), Expect = 6e-05 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 22/77 (28%) Frame = -2 Query: 303 WLPGSEG-QGVADVLFGDYGFSGKLARTWFKSADQLP-----MNVG-------------- 184 W G+EG +ADVLFGDY SGKL ++ +S Q+P +N G Sbjct: 571 WFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKPNKYTSR 630 Query: 183 --DKHYDPLFPFGFGLT 139 D+ L+PFG+GL+ Sbjct: 631 YFDEANGALYPFGYGLS 647
>BGLS_AGRTU (P27034) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)| (Beta-D-glucoside glucohydrolase) Length = 818 Score = 41.2 bits (95), Expect = 7e-04 Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 27/81 (33%) Frame = -2 Query: 303 WLPGSE-GQGVADVLFGDYGFSGKLARTWFKS-ADQLPMN-------------------- 190 W PG E G +ADVLFGD +G+L +T+ K+ D + Sbjct: 611 WYPGQELGNALADVLFGDVEPAGRLPQTFPKALTDNSAITDDPSIYPGQDGHVRYAEGIF 670 Query: 189 VGDKHYD-----PLFPFGFGL 142 VG +H+D PLFPFGFGL Sbjct: 671 VGYRHHDTREIEPLFPFGFGL 691
>BGLS_KLUMA (P07337) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 845 Score = 38.5 bits (88), Expect = 0.004 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 23/79 (29%) Frame = -2 Query: 306 AWLPGSE-GQGVADVLFGDYGFSGKLARTW-FKSADQ----------------LPMNVGD 181 AW G+E G +ADVL+GD +GKL+ +W FK D + VG Sbjct: 641 AWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVVYGEDIFVGY 700 Query: 180 KHYDPL-----FPFGFGLT 139 ++Y+ L FPFG+GL+ Sbjct: 701 RYYEKLQRKVAFPFGYGLS 719
>BGLS_SCHCO (P29091) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)| (Beta-D-glucoside glucohydrolase) (Fragment) Length = 192 Score = 38.5 bits (88), Expect = 0.004 Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -2 Query: 300 LPGSE-GQGVADVLFGDYGFSGKLARTWFKSADQLPMNV 187 LPG E G VAD+L+G Y SG+L T KSAD P V Sbjct: 119 LPGQEAGNSVADILYGAYNPSGRLPYTIAKSADDYPAQV 157
>XYNB_PRUPE (P83344) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152)| (Fragment) Length = 461 Score = 32.0 bits (71), Expect = 0.41 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 18/67 (26%) Frame = -2 Query: 285 GQGVADVLFGDYGFSGKLARTWFKS--ADQLPMNVGDKHYDP----------------LF 160 G +A+VLFG GKL TW+ LPM DP +F Sbjct: 248 GTAIANVLFGTANPGGKLPMTWYPQNYVTHLPMTDMAMRADPARGYPGRTYRFYIGPVVF 307 Query: 159 PFGFGLT 139 PFG GL+ Sbjct: 308 PFGLGLS 314
>SPT6H_MOUSE (Q62383) Transcription elongation factor SPT6| Length = 1726 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 33 KSTTKRNVCMYPIFHSHSPTDRDTSHLT 116 K TTK+ V IF + P++ ++SHLT Sbjct: 256 KKTTKKRVSRRSIFEMYEPSELESSHLT 283
>SPT6H_HUMAN (Q7KZ85) Transcription elongation factor SPT6 (hSPT6)| (Tat-cotransactivator 2 protein) (Tat-CT2 protein) Length = 1726 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 33 KSTTKRNVCMYPIFHSHSPTDRDTSHLT 116 K TTK+ V IF + P++ ++SHLT Sbjct: 256 KKTTKKRVSRRSIFEMYEPSELESSHLT 283
>ACPD_VIBPA (Q87PP9) Putative acyl carrier protein phosphodiesterase (EC| 3.1.4.14) (ACP phosphodiesterase) Length = 194 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -2 Query: 264 LFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTT 136 + GDY S KL + K+ DQ + V D +PL F + T Sbjct: 11 ILGDYSQSNKLVEDFIKNVDQDKLTVRDLAANPLPVLDFAVAT 53
>GLP1_CAEEL (P13508) Protein glp-1 precursor| Length = 1295 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/85 (22%), Positives = 29/85 (34%) Frame = +2 Query: 32 QINHKTQCMYVSHLSQSQPNRSRHIPSHPTHFLASVVRPNPKGKSGS*CLSPTFIGSWSA 211 Q NH +QC + + + PN RH + T + G+ S T + Sbjct: 819 QSNHSSQCSLLDNSAYYHPNTKRHCSDYSTGY---------NGEQYSQIYPQTLANGYPG 869 Query: 212 DLNHVRASFPENP*SPNSTSATPWP 286 D N + F +P A P Sbjct: 870 DYNELNFDFQSETFAPADLPADEIP 894
>HOX3_BRAFL (P50901) Homeobox protein HOX3| Length = 411 Score = 28.5 bits (62), Expect = 4.5 Identities = 25/89 (28%), Positives = 34/89 (38%) Frame = +2 Query: 38 NHKTQCMYVSHLSQSQPNRSRHIPSHPTHFLASVVRPNPKGKSGS*CLSPTFIGSWSADL 217 N + L Q+QP S++ P H H L P+ G + S +SP S Sbjct: 241 NMSNHMSMMGSLQQTQPAYSQYPPPHLNHSLPHQAPPHSVGLTMSGPVSPQCYQS----- 295 Query: 218 NHVRASFPENP*SPNSTSATPWPSEPGSH 304 NH SP S+ P P G+H Sbjct: 296 NH----------SPCPPSSAPHPVPMGNH 314
>Y2036_BORPE (Q7VWZ5) UPF0225 protein BP2036| Length = 133 Score = 28.5 bits (62), Expect = 4.5 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -3 Query: 308 PRGCPARRARAWPTCC 261 P GCP + RA+P CC Sbjct: 8 PAGCPCGKPRAYPDCC 23
>DNAA_CHRVO (Q7P259) Chromosomal replication initiator protein dnaA| Length = 467 Score = 26.2 bits (56), Expect(2) = 4.6 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 Query: 249 GFSGKLARTWFKSADQLPMNVGDKHYDPLFPFG 151 G +LAR +A Q+ N GD+ Y+PLF +G Sbjct: 143 GKGNQLARA---AAMQIAENPGDQAYNPLFVYG 172 Score = 20.8 bits (42), Expect(2) = 4.6 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = -1 Query: 73 KMGYIHTLRFVVDLL 29 K+ YIH R+V D++ Sbjct: 197 KIRYIHAERYVADIM 211
>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 210 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +1 Query: 205 VRRLEPRPRQLPGKPVVAEQHVGHALALRAGQPRG 309 ++R E PR PG+ A Q G A RAG+P G Sbjct: 1 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSG 35
>RENT1_ARATH (Q9FJR0) Regulator of nonsense transcripts 1 homolog (EC 3.6.1.-)| (ATP-dependent helicase UPF1) Length = 1254 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 38 NHKTQCMYVSHLSQSQPNRSRHIPSHP 118 ++ TQ + +S QSQPN+S P HP Sbjct: 1225 HYNTQPLNLSGPQQSQPNQSSQNPKHP 1251
>SOX13_HUMAN (Q9UN79) SOX-13 protein (Type 1 diabetes autoantigen ICA12) (Islet| cell antigen 12) Length = 889 Score = 27.7 bits (60), Expect = 7.7 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = +1 Query: 4 QDCIALLLLTNQPQNAMYVCIPSFTVTAQPIETHPISPDS 123 Q I LL Q N YV IP+F + QP+ P++PDS Sbjct: 191 QHKINLLQQQIQQVNMPYVMIPAFPPSHQPL---PVTPDS 227
>SOX13_MOUSE (Q04891) SOX-13 protein| Length = 985 Score = 27.7 bits (60), Expect = 7.7 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = +1 Query: 4 QDCIALLLLTNQPQNAMYVCIPSFTVTAQPIETHPISPDS 123 Q I LL Q N YV IP+F + QP+ P++PDS Sbjct: 184 QHKINLLQQQIQQVNMPYVMIPAFPPSHQPL---PVTPDS 220
>ATR_ARATH (Q9FKS4) Serine/threonine-protein kinase ATR (EC 2.7.11.1)| (DNA-repair protein ATR) (AtATR) (Ataxia telangiectasia-mutated and Rad3-related homolog) (Rad3-like protein) (AtRAD3) Length = 2702 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 111 DGMCLDRLGCDCERWDTYIHCVLWLIC 31 DG+ L+ LG + RW + C+L LIC Sbjct: 192 DGLVLNLLGAN--RWQPFATCILKLIC 216
>YM20_YEAST (P40210) Hypothetical 55.9 kDa protein in MDS1-RPL13B intergenic| region Length = 489 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +1 Query: 25 LLTNQPQNAMYVCIPSFTVTAQP 93 LLT++P N Y SF++T QP Sbjct: 328 LLTSEPANCPYCATASFSITYQP 350
>UR2R_MACMU (Q8HYC3) Urotensin II receptor (UR-II-R)| Length = 389 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Frame = +2 Query: 224 VRASFPENP*SPNSTSATPW--PSEPGS 301 + +S PE P SPN+T + W P+EP S Sbjct: 17 IGSSVPEPPGSPNATLNSSWASPTEPSS 44
>FBPC_PHOLL (Q7N8B9) Ferric cations import ATP-binding protein fbpC (EC| 3.6.3.30) Length = 351 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 213 SADQLPMNVGDKHYDPLFPFGFGLTTE 133 +A QL +VGD +Y + PFG + TE Sbjct: 321 NATQLQPDVGDNYYLEIHPFGMFILTE 347 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,279,790 Number of Sequences: 219361 Number of extensions: 724092 Number of successful extensions: 2395 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2336 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2390 length of database: 80,573,946 effective HSP length: 78 effective length of database: 63,463,788 effective search space used: 1523130912 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
