ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast69a07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 276 bits (139), Expect = 4e-71 Identities = 244/275 (88%), Gaps = 3/275 (1%) Strand = Plus / Plus Query: 39 gatgttacaatagctaacaaagctggttacaacagattcttggtgctcatatcctgatca 98 |||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||||| | Sbjct: 31777675 gatgttacaatatctaacaaagccggttacaacagattcttagtgttcatatcctgat-a 31777733 Query: 99 ctctactgtacataatatccctgcggacaaaaaagtttacacctcaccttagttcattcg 158 |||||||||||| |||||||||||||||||||||||| ||| | | ||||| ||||| | Sbjct: 31777734 ctctactgtaca-aatatccctgcggacaaaaaagttg-cactttatcttagctcatttg 31777791 Query: 159 tggagttcgtccttccaatagtgcttggttctccgattgacacagatgctaatgatttgg 218 | ||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 31777792 tagagtttgtccttccaatagtgcttggttctccgattgagacggatgctaatgacttgg 31777851 Query: 219 aggcccaggcagtggcattccttgccccctcatgtaaattccctcgctttgacggatata 278 | ||||| |||||||||||||| ||||| || ||||||||||||||||| || || |||| Sbjct: 31777852 aagcccaagcagtggcattcctggccccttcctgtaaattccctcgcttcgaagggtata 31777911 Query: 279 acctattgaatatctgtcttgcttgctcaaggtag 313 ||||| |||| | ||||||||||| ||||||||| Sbjct: 31777912 acctaaagaatttgtgtcttgcttgttcaaggtag 31777946
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 276 bits (139), Expect = 4e-71 Identities = 244/275 (88%), Gaps = 3/275 (1%) Strand = Plus / Plus Query: 39 gatgttacaatagctaacaaagctggttacaacagattcttggtgctcatatcctgatca 98 |||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||||| | Sbjct: 73473 gatgttacaatatctaacaaagccggttacaacagattcttagtgttcatatcctgat-a 73531 Query: 99 ctctactgtacataatatccctgcggacaaaaaagtttacacctcaccttagttcattcg 158 |||||||||||| |||||||||||||||||||||||| ||| | | ||||| ||||| | Sbjct: 73532 ctctactgtaca-aatatccctgcggacaaaaaagttg-cactttatcttagctcatttg 73589 Query: 159 tggagttcgtccttccaatagtgcttggttctccgattgacacagatgctaatgatttgg 218 | ||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 73590 tagagtttgtccttccaatagtgcttggttctccgattgagacggatgctaatgacttgg 73649 Query: 219 aggcccaggcagtggcattccttgccccctcatgtaaattccctcgctttgacggatata 278 | ||||| |||||||||||||| ||||| || ||||||||||||||||| || || |||| Sbjct: 73650 aagcccaagcagtggcattcctggccccttcctgtaaattccctcgcttcgaagggtata 73709 Query: 279 acctattgaatatctgtcttgcttgctcaaggtag 313 ||||| |||| | ||||||||||| ||||||||| Sbjct: 73710 acctaaagaatttgtgtcttgcttgttcaaggtag 73744
>dbj|AK062624.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-B12, full insert sequence Length = 818 Score = 276 bits (139), Expect = 4e-71 Identities = 244/275 (88%), Gaps = 3/275 (1%) Strand = Plus / Minus Query: 39 gatgttacaatagctaacaaagctggttacaacagattcttggtgctcatatcctgatca 98 |||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||||| | Sbjct: 797 gatgttacaatatctaacaaagccggttacaacagattcttagtgttcatatcctgat-a 739 Query: 99 ctctactgtacataatatccctgcggacaaaaaagtttacacctcaccttagttcattcg 158 |||||||||||| |||||||||||||||||||||||| ||| | | ||||| ||||| | Sbjct: 738 ctctactgtaca-aatatccctgcggacaaaaaagttg-cactttatcttagctcatttg 681 Query: 159 tggagttcgtccttccaatagtgcttggttctccgattgacacagatgctaatgatttgg 218 | ||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 680 tagagtttgtccttccaatagtgcttggttctccgattgagacggatgctaatgacttgg 621 Query: 219 aggcccaggcagtggcattccttgccccctcatgtaaattccctcgctttgacggatata 278 | ||||| |||||||||||||| ||||| || ||||||||||||||||| || || |||| Sbjct: 620 aagcccaagcagtggcattcctggccccttcctgtaaattccctcgcttcgaagggtata 561 Query: 279 acctattgaatatctgtcttgcttgctcaaggtag 313 ||||| |||| | ||||||||||| ||||||||| Sbjct: 560 acctaaagaatttgtgtcttgcttgttcaaggtag 526
>ref|XM_467860.1| Oryza sativa (japonica cultivar-group), mRNA Length = 936 Score = 174 bits (88), Expect = 1e-40 Identities = 148/168 (88%) Strand = Plus / Minus Query: 146 cttagttcattcgtggagttcgtccttccaatagtgcttggttctccgattgacacagat 205 ||||| ||||| || ||||| |||||||||||||||||||||||||||||||| || ||| Sbjct: 932 cttagctcatttgtagagtttgtccttccaatagtgcttggttctccgattgagacggat 873 Query: 206 gctaatgatttggaggcccaggcagtggcattccttgccccctcatgtaaattccctcgc 265 |||||||| ||||| ||||| |||||||||||||| ||||| || ||||||||||||||| Sbjct: 872 gctaatgacttggaagcccaagcagtggcattcctggccccttcctgtaaattccctcgc 813 Query: 266 tttgacggatataacctattgaatatctgtcttgcttgctcaaggtag 313 || || || ||||||||| |||| | ||||||||||| ||||||||| Sbjct: 812 ttcgaagggtataacctaaagaatttgtgtcttgcttgttcaaggtag 765
>gb|AY224470.1| Oryza sativa (japonica cultivar-group) isolate 26645 disulfide isomerase-like protein mRNA, complete cds Length = 936 Score = 174 bits (88), Expect = 1e-40 Identities = 148/168 (88%) Strand = Plus / Minus Query: 146 cttagttcattcgtggagttcgtccttccaatagtgcttggttctccgattgacacagat 205 ||||| ||||| || ||||| |||||||||||||||||||||||||||||||| || ||| Sbjct: 932 cttagctcatttgtagagtttgtccttccaatagtgcttggttctccgattgagacggat 873 Query: 206 gctaatgatttggaggcccaggcagtggcattccttgccccctcatgtaaattccctcgc 265 |||||||| ||||| ||||| |||||||||||||| ||||| || ||||||||||||||| Sbjct: 872 gctaatgacttggaagcccaagcagtggcattcctggccccttcctgtaaattccctcgc 813 Query: 266 tttgacggatataacctattgaatatctgtcttgcttgctcaaggtag 313 || || || ||||||||| |||| | ||||||||||| ||||||||| Sbjct: 812 ttcgaagggtataacctaaagaatttgtgtcttgcttgttcaaggtag 765
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 103 bits (52), Expect = 3e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 179 gtgcttggttctccgattgacacagatgctaatgatttggaggcccaggcagtggcattc 238 |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| |||| | Sbjct: 6235224 gtgcttggctctccgattgaaacagatgctaacgatttggaagcccaagcagtagcatgc 6235165 Query: 239 cttgccccctcatgtaaattccctcgctttgacggatataacctattgaatatctgtctt 298 ||||| || ||||| ||||||||| |||| ||||| |||| ||| || ||| | ||| || Sbjct: 6235164 cttgctccatcatgcaaattcccttgcttagacgggtataccctgttaaatttatgtttt 6235105 Query: 299 gcttgctcaagg 310 ||||||||||| Sbjct: 6235104 ccttgctcaagg 6235093
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 103 bits (52), Expect = 3e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 179 gtgcttggttctccgattgacacagatgctaatgatttggaggcccaggcagtggcattc 238 |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| |||| | Sbjct: 149043 gtgcttggctctccgattgaaacagatgctaacgatttggaagcccaagcagtagcatgc 148984 Query: 239 cttgccccctcatgtaaattccctcgctttgacggatataacctattgaatatctgtctt 298 ||||| || ||||| ||||||||| |||| ||||| |||| ||| || ||| | ||| || Sbjct: 148983 cttgctccatcatgcaaattcccttgcttagacgggtataccctgttaaatttatgtttt 148924 Query: 299 gcttgctcaagg 310 ||||||||||| Sbjct: 148923 ccttgctcaagg 148912
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 103 bits (52), Expect = 3e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 179 gtgcttggttctccgattgacacagatgctaatgatttggaggcccaggcagtggcattc 238 |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| |||| | Sbjct: 29300 gtgcttggctctccgattgaaacagatgctaacgatttggaagcccaagcagtagcatgc 29241 Query: 239 cttgccccctcatgtaaattccctcgctttgacggatataacctattgaatatctgtctt 298 ||||| || ||||| ||||||||| |||| ||||| |||| ||| || ||| | ||| || Sbjct: 29240 cttgctccatcatgcaaattcccttgcttagacgggtataccctgttaaatttatgtttt 29181 Query: 299 gcttgctcaagg 310 ||||||||||| Sbjct: 29180 ccttgctcaagg 29169
>dbj|AK059876.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F09, full insert sequence Length = 1134 Score = 103 bits (52), Expect = 3e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 179 gtgcttggttctccgattgacacagatgctaatgatttggaggcccaggcagtggcattc 238 |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| |||| | Sbjct: 847 gtgcttggctctccgattgaaacagatgctaacgatttggaagcccaagcagtagcatgc 788 Query: 239 cttgccccctcatgtaaattccctcgctttgacggatataacctattgaatatctgtctt 298 ||||| || ||||| ||||||||| |||| ||||| |||| ||| || ||| | ||| || Sbjct: 787 cttgctccatcatgcaaattcccttgcttagacgggtataccctgttaaatttatgtttt 728 Query: 299 gcttgctcaagg 310 ||||||||||| Sbjct: 727 ccttgctcaagg 716
>gb|AY739306.1| Oryza sativa (japonica cultivar-group) adenosine 5'-phosphosulfate reductase-like (APRL2) mRNA, complete cds Length = 1134 Score = 103 bits (52), Expect = 3e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 179 gtgcttggttctccgattgacacagatgctaatgatttggaggcccaggcagtggcattc 238 |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| |||| | Sbjct: 847 gtgcttggctctccgattgaaacagatgctaacgatttggaagcccaagcagtagcatgc 788 Query: 239 cttgccccctcatgtaaattccctcgctttgacggatataacctattgaatatctgtctt 298 ||||| || ||||| ||||||||| |||| ||||| |||| ||| || ||| | ||| || Sbjct: 787 cttgctccatcatgcaaattcccttgcttagacgggtataccctgttaaatttatgtttt 728 Query: 299 gcttgctcaagg 310 ||||||||||| Sbjct: 727 ccttgctcaagg 716
>gb|AY739298.1| Zea mays adenosine 5'-phosphosulfate reductase 3 (APRL3) mRNA, complete cds Length = 1484 Score = 103 bits (52), Expect = 3e-19 Identities = 172/212 (81%), Gaps = 5/212 (2%) Strand = Plus / Minus Query: 64 gttacaacagattcttggtgctcatatcctgatcactctactgtac-----ataatatcc 118 |||||||||| |||| |||| ||||||||||||| ||||||||||| ||| |||| Sbjct: 1221 gttacaacagtttctgggtgttcatatcctgatcgctctactgtactgtacatataatcc 1162 Query: 119 ctgcggacaaaaaagtttacacctcaccttagttcattcgtggagttcgtccttccaata 178 ||| ||||||||||| | | | ||| ||||| ||| | || ||||| ||||||||||| Sbjct: 1161 ctggggacaaaaaagatcagatttcatcttagctcacttgtagagtttgtccttccaatt 1102 Query: 179 gtgcttggttctccgattgacacagatgctaatgatttggaggcccaggcagtggcattc 238 | ||||||||||| ||||| || ||||||||||||||||| ||||| || || || ||| Sbjct: 1101 gcacttggttctccaattgaaactgatgctaatgatttggaagcccaagcggtagcgttc 1042 Query: 239 cttgccccctcatgtaaattccctcgctttga 270 |||| ||||| || | ||| ||||||||||| Sbjct: 1041 attgcgccctcctgcagatttcctcgctttga 1010
>gb|AY739299.1| Zea mays adenosine 5'-phosphosulfate reductase 4 (APRL4) mRNA, complete cds Length = 1679 Score = 85.7 bits (43), Expect = 8e-14 Identities = 91/107 (85%) Strand = Plus / Minus Query: 161 gagttcgtccttccaatagtgcttggttctccgattgacacagatgctaatgatttggag 220 ||||| ||||||||||| | ||||||||||| || || ||||||||||||||||||||| Sbjct: 1109 gagtttgtccttccaatcgcacttggttctccaatcgaaacagatgctaatgatttggag 1050 Query: 221 gcccaggcagtggcattccttgccccctcatgtaaattccctcgctt 267 ||||| || || || ||| |||||||||| || | ||| |||||||| Sbjct: 1049 gcccaagcggtagcgttcattgccccctcctgcagatttcctcgctt 1003
>emb|AL158154.28| Human DNA sequence from clone RP11-383M4 on chromosome 9 Contains two novel genes and three putative novel pseudogenes, complete sequence Length = 189319 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 atgatgatgttacaatagct 53 |||||||||||||||||||| Sbjct: 79471 atgatgatgttacaatagct 79490
>gb|AC068602.2|AC068602 Genomic sequence for Arabidopsis thaliana BAC F14D16 from chromosome I, complete sequence Length = 87508 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tatttctaatgatgatgtta 45 |||||||||||||||||||| Sbjct: 69238 tatttctaatgatgatgtta 69219
>ref|XM_561032.1| Anopheles gambiae str. PEST ENSANGP00000028649 (ENSANGG00000024005), partial mRNA Length = 1146 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ctgatcactctactgtacat 111 |||||||||||||||||||| Sbjct: 329 ctgatcactctactgtacat 348
>ref|XM_561031.1| Anopheles gambiae str. PEST ENSANGP00000028179 (ENSANGG00000024005), partial mRNA Length = 1299 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ctgatcactctactgtacat 111 |||||||||||||||||||| Sbjct: 659 ctgatcactctactgtacat 678
>ref|XM_553955.1| Anopheles gambiae str. PEST ENSANGP00000026187 (ENSANGG00000022451), partial mRNA Length = 1161 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ctgatcactctactgtacat 111 |||||||||||||||||||| Sbjct: 647 ctgatcactctactgtacat 666
>emb|CR932980.12| Zebrafish DNA sequence from clone DKEY-81L13 in linkage group 5, complete sequence Length = 253220 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 taacctattgaatatctgtc 296 |||||||||||||||||||| Sbjct: 181894 taacctattgaatatctgtc 181913 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,469,000 Number of Sequences: 3902068 Number of extensions: 2469000 Number of successful extensions: 46819 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46762 Number of HSP's gapped (non-prelim): 49 length of query: 313 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 291 effective length of database: 17,147,199,772 effective search space: 4989835133652 effective search space used: 4989835133652 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
