ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast65h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MINC_PROMA (Q7VDL2) Probable septum site-determining protein minC 31 1.5
2C13A8_CAEEL (Q27516) Putative cytochrome P450 CYP13A8 (EC 1.14.-.-) 30 3.2
3TLR9_HUMAN (Q9NR96) Toll-like receptor 9 precursor (CD289 antigen) 29 4.2
4TLR9_FELCA (Q5I2M7) Toll-like receptor 9 precursor (CD289 antigen) 29 5.5
5DMSA_RHOSH (Q57366) Dimethyl sulfoxide reductase precursor (EC 1... 29 5.5
6CART1_XENLA (Q91574) Cartilage homeoprotein 1 (CART-1) (XCART1) 29 5.5
7RFBM_SALMU (Q00473) Mannose-1-phosphate guanylyltransferase [GDP... 28 7.2
8TLR9_MOUSE (Q9EQU3) Toll-like receptor 9 precursor (CD289 antigen) 28 9.4
9TSPE_BPP22 (P12528) Bifunctional tail protein (Late protein gp9)... 28 9.4

>MINC_PROMA (Q7VDL2) Probable septum site-determining protein minC|
          Length = 221

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 5   RPVNDHIEGKLARGNRRRCDNTFRACMTSHEEIVTIHPASTT 130
           RPV   I  K+ARG + + +       T  EE++ I PA TT
Sbjct: 180 RPVQLRIANKIARGPKEKPELGLAEEATIQEEVIVIKPARTT 221



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>C13A8_CAEEL (Q27516) Putative cytochrome P450 CYP13A8 (EC 1.14.-.-)|
          Length = 509

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 192 FGGFVSSKIRNLTRTLLAGRCVVEAGWIVTISSWDVMHARNV 67
           F  F +S  R   R  + G  +VEAG  V I +W + H +NV
Sbjct: 383 FASFANS--RRCMRNTVIGEQIVEAGVDVMIDTWTLHHDKNV 422



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>TLR9_HUMAN (Q9NR96) Toll-like receptor 9 precursor (CD289 antigen)|
          Length = 1032

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 44  GNRRRCDNTFRACMTSHEEIVTIHPASTTHL 136
           GN RRCD+    CM        +HP + +HL
Sbjct: 253 GNCRRCDHAPNPCMECPRHFPQLHPDTFSHL 283



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>TLR9_FELCA (Q5I2M7) Toll-like receptor 9 precursor (CD289 antigen)|
          Length = 1031

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 44  GNRRRCDNTFRACMTSHEEIVTIHPASTTHL 136
           GN RRCD+    CM   +    +HP + +HL
Sbjct: 253 GNCRRCDHARNPCMECPKGFPHLHPDTFSHL 283



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>DMSA_RHOSH (Q57366) Dimethyl sulfoxide reductase precursor (EC 1.8.99.-) (DMSO|
           reductase) (DMSOR)
          Length = 822

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 186 GFVSSKIRNLTRTLLAGRCVVEAGWIV 106
           G  + +IR L R+ +AGR ++ AGW +
Sbjct: 340 GLPAEQIRELARSFVAGRTMLAAGWSI 366



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>CART1_XENLA (Q91574) Cartilage homeoprotein 1 (CART-1) (XCART1)|
          Length = 335

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 136 PRQQSTCEVPYFARNKTSKPLTEHTQH 216
           PR+ S+C  PY   ++T  P T  T H
Sbjct: 251 PREPSSCMTPYSHSSRTDSPYTGFTNH 277



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>RFBM_SALMU (Q00473) Mannose-1-phosphate guanylyltransferase [GDP] (EC|
           2.7.7.22) (GDP-mannose pyrophosphorylase) (GMP)
          Length = 473

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 77  ACMTSHEEIVTIHPASTTHLPANKV 151
           AC+T  EEI TI    +T +PAN V
Sbjct: 411 ACITKGEEIFTISENESTFIPANTV 435



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>TLR9_MOUSE (Q9EQU3) Toll-like receptor 9 precursor (CD289 antigen)|
          Length = 1032

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 44  GNRRRCDNTFRACMTSHEEIVTIHPASTTHL 136
           GN RRCD+    C+   ++ + +HP +  HL
Sbjct: 253 GNCRRCDHAPNPCIECGQKSLHLHPETFHHL 283



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>TSPE_BPP22 (P12528) Bifunctional tail protein (Late protein gp9) [Includes:|
           Tailspike-protein (TSP); Endorhamnosidase (EC 3.2.1.-)
           (Endo-1,3-alpha-L-rhamnosidase)]
          Length = 667

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 145 VGGEVRRRSGMDCYNLFMGCHAC 77
           +G EV R SG+    LF GCH C
Sbjct: 269 IGVEVHRASGLMAGFLFRGCHFC 291


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,195,770
Number of Sequences: 219361
Number of extensions: 1014053
Number of successful extensions: 2367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2367
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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