ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast65g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC165433.5| Mus musculus chromosome 5, clone RP23-442L7, comp... 42 0.28
2ref|NM_016912.1| Mus musculus cyclin-dependent kinase-like 2 (CD... 42 0.28
3ref|NM_177270.3| Mus musculus cyclin-dependent kinase-like 2 (CD... 42 0.28
4gb|AC122438.2| Mus musculus BAC clone RP24-216M6 from 5, complet... 42 0.28
5dbj|AK126804.1| Homo sapiens cDNA FLJ44854 fis, clone BRACE30524... 42 0.28
6gb|AC008902.5| Homo sapiens chromosome 5 clone CTD-2249G23, comp... 42 0.28
7dbj|AB029073.2| Mus musculus Kkm gene for Ser/Thr kinase KKIAMRE... 42 0.28
8dbj|AB029066.1| Mus musculus Kkm mRNA for Ser/Thr kinase KKIAMRE... 42 0.28
9dbj|AB029065.1| Mus musculus Kkm mRNA for Ser/Thr kinase KKIAMRE... 42 0.28
10gb|AY518539.1| Homo sapiens insulin-like growth factor binding p... 40 1.1
11gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, comple... 40 1.1
12emb|BX855597.6| Zebrafish DNA sequence from clone DKEY-9D15, com... 40 1.1
13gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 1.1
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.1
15dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.1
16emb|AL845365.9| Zebrafish DNA sequence from clone DKEY-150H13 in... 40 1.1
17emb|Z11126.1|CEZK643 Caenorhabditis elegans Cosmid ZK643, comple... 40 1.1
18emb|CR556713.11| Zebrafish DNA sequence from clone DKEY-28O14 in... 40 1.1
19emb|AL935138.7| Mouse DNA sequence from clone RP23-222H15 on chr... 40 1.1
20gb|AC158304.11| Mus musculus chromosome 7, clone RP24-192F23, co... 38 4.3
21emb|Z71181.1|CEK07C5 Caenorhabditis elegans Cosmid K07C5, comple... 38 4.3
22gb|AC123842.4| Mus musculus BAC clone RP23-400N18 from chromosom... 38 4.3
23emb|BX901917.9| Zebrafish DNA sequence from clone DKEY-32E10 in ... 38 4.3
24gb|AF512556.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 su... 38 4.3
25emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in... 38 4.3
26gb|AC098482.2| Homo sapiens chromosome 3 clone RP11-839L21, comp... 38 4.3
27gb|AC152893.4| Saimiri boliviensis boliviensis clone CH254-211C3... 38 4.3
28gb|AC008966.9| Homo sapiens chromosome 5 clone CTD-2366F13, comp... 38 4.3
29gb|AC008973.6| Homo sapiens chromosome 5 clone CTD-2380L12, comp... 38 4.3
30gb|AC010638.7|AC010638 Homo sapiens chromosome 5 clone CTD-2350J... 38 4.3
31emb|BX322624.8| Zebrafish DNA sequence from clone DKEY-273E21 in... 38 4.3
32dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.3
33gb|AC084632.1|CBRG45F18 Caenorhabditis briggsae cosmid G45F18, c... 38 4.3
34dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.3
35gb|AC004695.1|AC004695 Homo sapiens BAC clone CTA-317H1 from 3p1... 38 4.3
36emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in l... 38 4.3
37emb|AL117193.2|CEY105C5A Caenorhabditis elegans YAC Y105C5A, com... 38 4.3
38gb|AC148186.3| Saimiri boliviensis boliviensis clone CH254-359M1... 38 4.3
39emb|AL732316.10| Mouse DNA sequence from clone RP23-367I7 on chr... 38 4.3 
>gb|AC165433.5| Mus musculus chromosome 5, clone RP23-442L7, complete sequence
          Length = 202557

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 18     ctctgcacccatctcttattt 38
              |||||||||||||||||||||
Sbjct: 136778 ctctgcacccatctcttattt 136798
to top
>ref|NM_016912.1| Mus musculus cyclin-dependent kinase-like 2 (CDC2-related kinase)
            (Cdkl2), transcript variant 1, mRNA
          Length = 4022

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 18   ctctgcacccatctcttattt 38
            |||||||||||||||||||||
Sbjct: 2757 ctctgcacccatctcttattt 2737
to top
>ref|NM_177270.3| Mus musculus cyclin-dependent kinase-like 2 (CDC2-related kinase)
            (Cdkl2), transcript variant 2, mRNA
          Length = 3988

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 18   ctctgcacccatctcttattt 38
            |||||||||||||||||||||
Sbjct: 2656 ctctgcacccatctcttattt 2636
to top
>gb|AC122438.2| Mus musculus BAC clone RP24-216M6 from 5, complete sequence
          Length = 193659

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 18     ctctgcacccatctcttattt 38
              |||||||||||||||||||||
Sbjct: 133883 ctctgcacccatctcttattt 133863
to top
>dbj|AK126804.1| Homo sapiens cDNA FLJ44854 fis, clone BRACE3052410, highly  similar
            to Homo sapiens IDN3 protein (IDN3)
          Length = 3455

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 61   actggacaaatctgaaaaaagtttt 85
            |||| ||||||||||||||||||||
Sbjct: 3402 actgaacaaatctgaaaaaagtttt 3426
to top
>gb|AC008902.5| Homo sapiens chromosome 5 clone CTD-2249G23, complete sequence
          Length = 101352

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 61    actggacaaatctgaaaaaagtttt 85
             |||| ||||||||||||||||||||
Sbjct: 29065 actgaacaaatctgaaaaaagtttt 29089
to top
>dbj|AB029073.2| Mus musculus Kkm gene for Ser/Thr kinase KKIAMRE, complete cds
          Length = 30852

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    ctctgcacccatctcttattt 38
             |||||||||||||||||||||
Sbjct: 28173 ctctgcacccatctcttattt 28153
to top
>dbj|AB029066.1| Mus musculus Kkm mRNA for Ser/Thr kinase KKIAMRE-gamma, complete cds
          Length = 3988

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 18   ctctgcacccatctcttattt 38
            |||||||||||||||||||||
Sbjct: 2656 ctctgcacccatctcttattt 2636
to top
>dbj|AB029065.1| Mus musculus Kkm mRNA for Ser/Thr kinase KKIAMRE-beta, complete cds
          Length = 4022

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 18   ctctgcacccatctcttattt 38
            |||||||||||||||||||||
Sbjct: 2757 ctctgcacccatctcttattt 2737
to top
>gb|AY518539.1| Homo sapiens insulin-like growth factor binding protein 7 (IGFBP7)
             gene, complete cds
          Length = 82343

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    atctcttatttgatgatgct 47
             ||||||||||||||||||||
Sbjct: 59394 atctcttatttgatgatgct 59375
to top
>gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, complete sequence
          Length = 203474

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     atctcttatttgatgatgct 47
              ||||||||||||||||||||
Sbjct: 166845 atctcttatttgatgatgct 166864
to top
>emb|BX855597.6| Zebrafish DNA sequence from clone DKEY-9D15, complete sequence
          Length = 53277

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    atgcactggacaaatctgaa 76
             ||||||||||||||||||||
Sbjct: 23071 atgcactggacaaatctgaa 23052
to top
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 29      tctcttatttgatgatgctc 48
               ||||||||||||||||||||
Sbjct: 3547911 tctcttatttgatgatgctc 3547892
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 71      tctgaaaaaagttttgtttc 90
               ||||||||||||||||||||
Sbjct: 5636783 tctgaaaaaagttttgtttc 5636802
to top
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    tctgaaaaaagttttgtttc 90
             ||||||||||||||||||||
Sbjct: 64519 tctgaaaaaagttttgtttc 64538
to top
>emb|AL845365.9| Zebrafish DNA sequence from clone DKEY-150H13 in linkage group 20,
              complete sequence
          Length = 212942

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     aaatctgaaaaaagttttgt 87
              ||||||||||||||||||||
Sbjct: 190066 aaatctgaaaaaagttttgt 190047
to top
>emb|Z11126.1|CEZK643 Caenorhabditis elegans Cosmid ZK643, complete sequence
          Length = 39534

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 63   tggacaaatctgaaaaaagttttg 86
            ||||||||||||||||| ||||||
Sbjct: 2652 tggacaaatctgaaaaatgttttg 2675
to top
>emb|CR556713.11| Zebrafish DNA sequence from clone DKEY-28O14 in linkage group 11,
              complete sequence
          Length = 229692

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     aatctgaaaaaagttttgtt 88
              ||||||||||||||||||||
Sbjct: 211675 aatctgaaaaaagttttgtt 211694
to top
>emb|AL935138.7| Mouse DNA sequence from clone RP23-222H15 on chromosome 2, complete
              sequence
          Length = 139189

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     tcttatttgatgatgctcca 50
              ||||||||||||||||||||
Sbjct: 115337 tcttatttgatgatgctcca 115318
to top
>gb|AC158304.11| Mus musculus chromosome 7, clone RP24-192F23, complete sequence
          Length = 166451

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 72     ctgaaaaaagttttgtttc 90
              |||||||||||||||||||
Sbjct: 111433 ctgaaaaaagttttgtttc 111415
to top
>emb|Z71181.1|CEK07C5 Caenorhabditis elegans Cosmid K07C5, complete sequence
          Length = 32509

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 78   aaagttttgtttccacgaa 96
            |||||||||||||||||||
Sbjct: 3822 aaagttttgtttccacgaa 3840
to top
>gb|AC123842.4| Mus musculus BAC clone RP23-400N18 from chromosome 10, complete
             sequence
          Length = 200997

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 42    gatgctccataagacatgcactg 64
             |||||| ||||||||||||||||
Sbjct: 48492 gatgctgcataagacatgcactg 48470
to top
>emb|BX901917.9| Zebrafish DNA sequence from clone DKEY-32E10 in linkage group 5, complete
              sequence
          Length = 238589

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 68     aaatctgaaaaaagttttg 86
              |||||||||||||||||||
Sbjct: 153825 aaatctgaaaaaagttttg 153843
to top
>gb|AF512556.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2
            receptor) (ITGA2) gene, complete cds
          Length = 105904

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 3    gcaaaagtaaaagttctct 21
            |||||||||||||||||||
Sbjct: 6053 gcaaaagtaaaagttctct 6035
to top
>emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14,
             complete sequence
          Length = 262038

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 72    ctgaaaaaagttttgtttccacg 94
             ||||||||||| |||||||||||
Sbjct: 64441 ctgaaaaaagtattgtttccacg 64419
to top
>gb|AC098482.2| Homo sapiens chromosome 3 clone RP11-839L21, complete sequence
          Length = 211533

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 3      gcaaaagtaaaagttctct 21
              |||||||||||||||||||
Sbjct: 199405 gcaaaagtaaaagttctct 199387
to top
>gb|AC152893.4| Saimiri boliviensis boliviensis clone CH254-211C3, complete sequence
          Length = 122416

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 35    atttgatgatgctccataagaca 57
             ||||||||||||| |||||||||
Sbjct: 97995 atttgatgatgctacataagaca 97973
to top
>gb|AC008966.9| Homo sapiens chromosome 5 clone CTD-2366F13, complete sequence
          Length = 174831

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 3      gcaaaagtaaaagttctct 21
              |||||||||||||||||||
Sbjct: 149822 gcaaaagtaaaagttctct 149840
to top
>gb|AC008973.6| Homo sapiens chromosome 5 clone CTD-2380L12, complete sequence
          Length = 117032

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     gcaaaagtaaaagttctct 21
             |||||||||||||||||||
Sbjct: 96922 gcaaaagtaaaagttctct 96940
to top
>gb|AC010638.7|AC010638 Homo sapiens chromosome 5 clone CTD-2350J17, complete sequence
          Length = 129298

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    aatctgaaaaaagttttgt 87
             |||||||||||||||||||
Sbjct: 78944 aatctgaaaaaagttttgt 78962
to top
>emb|BX322624.8| Zebrafish DNA sequence from clone DKEY-273E21 in linkage group 2,
              complete sequence
          Length = 118516

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 68     aaatctgaaaaaagttttgtttc 90
              |||||||||||||||| ||||||
Sbjct: 109710 aaatctgaaaaaagttgtgtttc 109688
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 74      gaaaaaagttttgtttcca 92
               |||||||||||||||||||
Sbjct: 5753039 gaaaaaagttttgtttcca 5753057
to top
>gb|AC084632.1|CBRG45F18 Caenorhabditis briggsae cosmid G45F18, complete sequence
          Length = 30741

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 66    acaaatctgaaaaaagttt 84
             |||||||||||||||||||
Sbjct: 17030 acaaatctgaaaaaagttt 17048
to top
>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451C06
          Length = 151773

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    gaaaaaagttttgtttcca 92
             |||||||||||||||||||
Sbjct: 77741 gaaaaaagttttgtttcca 77759
to top
>gb|AC004695.1|AC004695 Homo sapiens BAC clone CTA-317H1 from 3p13-3p14.2, complete sequence
          Length = 149572

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 3      gcaaaagtaaaagttctct 21
              |||||||||||||||||||
Sbjct: 119845 gcaaaagtaaaagttctct 119863
to top
>emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in linkage group 20, complete
              sequence
          Length = 249791

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 58     tgcactggacaaatctgaa 76
              |||||||||||||||||||
Sbjct: 235753 tgcactggacaaatctgaa 235771
to top
>emb|AL117193.2|CEY105C5A Caenorhabditis elegans YAC Y105C5A, complete sequence
          Length = 314838

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 74    gaaaaaagttttgtttcca 92
             |||||||||||||||||||
Sbjct: 78613 gaaaaaagttttgtttcca 78595
to top
>gb|AC148186.3| Saimiri boliviensis boliviensis clone CH254-359M10, complete sequence
          Length = 189199

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   atttgatgatgctccataagaca 57
            ||||||||||||| |||||||||
Sbjct: 2720 atttgatgatgctacataagaca 2698
to top
>emb|AL732316.10| Mouse DNA sequence from clone RP23-367I7 on chromosome 2, complete
             sequence
          Length = 150707

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    ctggacaaatctgaaaaaa 80
             |||||||||||||||||||
Sbjct: 87654 ctggacaaatctgaaaaaa 87672


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,361,375
Number of Sequences: 3902068
Number of extensions: 1361375
Number of successful extensions: 102048
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101857
Number of HSP's gapped (non-prelim): 191
length of query: 98
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 77
effective length of database: 17,151,101,840
effective search space: 1320634841680
effective search space used: 1320634841680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top