ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast65f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related ... 549 e-153
2emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase 521 e-145
3emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor ... 214 1e-52
4gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, par... 111 1e-21
5gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, p... 92 1e-15
6ref|NM_125807.3| Arabidopsis thaliana peroxidase AT5G64110 mRNA,... 56 6e-05
7gb|AY065173.1| Arabidopsis thaliana peroxidase ATP3a homolog (At... 56 6e-05
8emb|BX830987.1|CNS0A0RL Arabidopsis thaliana Full-length cDNA Co... 56 6e-05
9gb|BT003353.1| Arabidopsis thaliana peroxidase ATP3a homolog (At... 56 6e-05
10gb|AY086554.1| Arabidopsis thaliana clone 2577 mRNA, complete se... 56 6e-05
11dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 56 6e-05
12ref|XM_474444.1| Oryza sativa (japonica cultivar-group), predic... 44 0.24
13gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, co... 44 0.24
14emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 44 0.24
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.24
16dbj|AK104833.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.24
17dbj|AK102307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.24
18dbj|AK060789.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.24
19tpe|BN000588.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 44 0.24
20emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.24
21emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 44 0.24
22gb|AF019743.1|AF019743 Oryza sativa cationic peroxidase (OsCPX1)... 44 0.24
23gb|AY389595.1| Hyacinthus orientalis secretory peroxidase mRNA, ... 42 0.96
24ref|NM_183542.2| Oryza sativa (japonica cultivar-group), mRNA 40 3.8
25ref|XM_478764.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.8
26gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
27gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 40 3.8
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.8
29gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 3.8
30gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome... 40 3.8
31dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
32dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
34dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
35dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
36dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
37dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
38dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
39dbj|AK103623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
40gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
41gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complet... 40 3.8 
>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase
          Length = 1245

 Score =  549 bits (277), Expect = e-153
 Identities = 280/281 (99%)
 Strand = Plus / Minus

                                                                        
Query: 9    tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 68
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186

                                                                        
Query: 69   gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 1126

                                                                        
Query: 129  atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 1066

                                                                        
Query: 189  ggacacgcctgttggggacggcgcatttgttccggatctcgcccttggtgccggtgagaa 248
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1065 ggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgccggtgagaa 1006

                                                     
Query: 249  tgtccatgttgctcatcttggtcatggacctcgcgaactgc 289
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 tgtccatgttgctcatcttggtcatggacctcgcgaactgc 965
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>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase
          Length = 740

 Score =  521 bits (263), Expect = e-145
 Identities = 280/283 (98%), Gaps = 2/283 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   tttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacaca 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacaca 590

                                                                       
Query: 67  tagactacttaacggccactcacacagtcacacagtactactacgttacaccgattggtt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tagactacttaacggccactcacacagtcacacagtactactacgttacaccgattggtt 530

                                                                       
Query: 127 atatatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtc 186
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 529 atatatctctcacatgtcagcggcgatcccctcgt-gccggcgacggcggtctcgatgtc 471

                                                                       
Query: 187 ctggacacgcctgttggggacggcgcatttgttccggatctcgcccttggtgccggtgag 246
           || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 470 ct-gacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgccggtgag 412

                                                      
Query: 247 aatgtccatgttgctcatcttggtcatggacctcgcgaactgc 289
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aatgtccatgttgctcatcttggtcatggacctcgcgaactgc 369
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>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar
            Cheyenne
          Length = 1226

 Score =  214 bits (108), Expect = 1e-52
 Identities = 144/156 (92%)
 Strand = Plus / Minus

                                                                        
Query: 134  tctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcctggaca 193
            ||||||||||| |||||||||||||||||||||| |  |||||||||||| |||||||||
Sbjct: 1107 tctcacatgtcggcggcgatcccctcgtcgccggtggtggcggtctcgatatcctggaca 1048

                                                                        
Query: 194  cgcctgttggggacggcgcatttgttccggatctcgcccttggtgccggtgagaatgtcc 253
            |||||||||||| ||||||| ||||||||||||||||||||| |||||||||| | ||||
Sbjct: 1047 cgcctgttgggggcggcgcagttgttccggatctcgcccttgttgccggtgaggaggtcc 988

                                                
Query: 254  atgttgctcatcttggtcatggacctcgcgaactgc 289
            |||||||||||||||||||||||||  |||||||||
Sbjct: 987  atgttgctcatcttggtcatggaccgggcgaactgc 952
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>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds
          Length = 760

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                       
Query: 172 ggcggtctcgatgtcctggacacgcctgttggggacggcgcatttgttccggatctcgcc 231
           ||||||||||||| ||| |||||| ||||||||||||||||| |||  ||||||||||||
Sbjct: 587 ggcggtctcgatgcccttgacacggctgttggggacggcgcagttgaaccggatctcgcc 528

                                               
Query: 232 cttggtgccggtgagaatgtccatgttgctcatctt 267
           || | |||||||||| | ||||||||||||||||||
Sbjct: 527 ctggctgccggtgagcaagtccatgttgctcatctt 492
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>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds
          Length = 1308

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 100/118 (84%)
 Strand = Plus / Minus

                                                                        
Query: 172  ggcggtctcgatgtcctggacacgcctgttggggacggcgcatttgttccggatctcgcc 231
            ||||||||||||| | | ||| ||||| |||||||||||||| || | ||||||||| ||
Sbjct: 1023 ggcggtctcgatgacatcgacgcgcctattggggacggcgcagttctgccggatctcacc 964

                                                                      
Query: 232  cttggtgccggtgagaatgtccatgttgctcatcttggtcatggacctcgcgaactgc 289
            || |||||| ||||| | ||||||||||||||||||   ||||||| | |||||||||
Sbjct: 963  ctgggtgccagtgagcaagtccatgttgctcatcttcaccatggacttggcgaactgc 906
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>ref|NM_125807.3| Arabidopsis thaliana peroxidase AT5G64110 mRNA, complete cds
          Length = 1307

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                        
Query: 260  ctcatcttggtcatggacctcgcgaact 287
            ||||||||||||||||||||||||||||
Sbjct: 1013 ctcatcttggtcatggacctcgcgaact 986
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>gb|AY065173.1| Arabidopsis thaliana peroxidase ATP3a homolog (At5g64110; MHJ24.9)
            mRNA, complete cds
          Length = 1177

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                        
Query: 260  ctcatcttggtcatggacctcgcgaact 287
            ||||||||||||||||||||||||||||
Sbjct: 1011 ctcatcttggtcatggacctcgcgaact 984
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>emb|BX830987.1|CNS0A0RL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS46ZC04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1264

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 260 ctcatcttggtcatggacctcgcgaact 287
           ||||||||||||||||||||||||||||
Sbjct: 970 ctcatcttggtcatggacctcgcgaact 943
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>gb|BT003353.1| Arabidopsis thaliana peroxidase ATP3a homolog (At5g64110) mRNA,
           complete cds
          Length = 1087

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 260 ctcatcttggtcatggacctcgcgaact 287
           ||||||||||||||||||||||||||||
Sbjct: 929 ctcatcttggtcatggacctcgcgaact 902
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>gb|AY086554.1| Arabidopsis thaliana clone 2577 mRNA, complete sequence
          Length = 1158

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                        
Query: 260  ctcatcttggtcatggacctcgcgaact 287
            ||||||||||||||||||||||||||||
Sbjct: 1013 ctcatcttggtcatggacctcgcgaact 986
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>dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHJ24
          Length = 48622

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                         
Query: 260   ctcatcttggtcatggacctcgcgaact 287
             ||||||||||||||||||||||||||||
Sbjct: 28045 ctcatcttggtcatggacctcgcgaact 28072
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>ref|XM_474444.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                       
Query: 207 cggcgcatttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 266
           ||||||| ||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 970 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 911

             
Query: 267 tg 268
           ||
Sbjct: 910 tg 909
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>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence
          Length = 253910

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 83    cactcacacagtcacacagtactact 108
             |||||| |||||||||||||||||||
Sbjct: 35412 cactcatacagtcacacagtactact 35437
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>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                         
Query: 207   cggcgcatttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 266
             ||||||| ||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 90573 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 90514

               
Query: 267   tg 268
             ||
Sbjct: 90513 tg 90512
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                            
Query: 207      cggcgcatttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 266
                ||||||| ||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 35222888 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 35222947

                  
Query: 267      tg 268
                ||
Sbjct: 35222948 tg 35222949
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>dbj|AK104833.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B05, full
            insert sequence
          Length = 1298

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 207  cggcgcatttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 266
            ||||||| ||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 1026 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 967

              
Query: 267  tg 268
            ||
Sbjct: 966  tg 965
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>dbj|AK102307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B01, full
            insert sequence
          Length = 1487

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 207  cggcgcatttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 266
            ||||||| ||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 1177 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 1118

              
Query: 267  tg 268
            ||
Sbjct: 1117 tg 1116
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>dbj|AK060789.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D09, full
            insert sequence
          Length = 1349

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 207  cggcgcatttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 266
            ||||||| ||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 1028 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 969

              
Query: 267  tg 268
            ||
Sbjct: 968  tg 967
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>tpe|BN000588.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx59 gene for
            class III peroxidase 59 precursor, exons 1-3
          Length = 1290

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 207  cggcgcatttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 266
            ||||||| ||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 1219 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 1160

              
Query: 267  tg 268
            ||
Sbjct: 1159 tg 1158
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>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete
             sequence
          Length = 82895

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                         
Query: 207   cggcgcatttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 266
             ||||||| ||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 66474 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 66533

               
Query: 267   tg 268
             ||
Sbjct: 66534 tg 66535
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>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
             complete sequence
          Length = 173770

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                         
Query: 207   cggcgcatttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 266
             ||||||| ||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 18733 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 18792

               
Query: 267   tg 268
             ||
Sbjct: 18793 tg 18794
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>gb|AF019743.1|AF019743 Oryza sativa cationic peroxidase (OsCPX1) mRNA, complete cds
          Length = 1333

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 207  cggcgcatttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 266
            ||||||| ||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 1015 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 956

              
Query: 267  tg 268
            ||
Sbjct: 955  tg 954
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>gb|AY389595.1| Hyacinthus orientalis secretory peroxidase mRNA, partial cds
          Length = 578

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 218 ttccggatctcgcccttggtgccggtgag 246
           |||||||||||||||||||  ||||||||
Sbjct: 266 ttccggatctcgcccttggatccggtgag 238
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>ref|NM_183542.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 653

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 tcgtcgccggcgacggcggt 177
           ||||||||||||||||||||
Sbjct: 440 tcgtcgccggcgacggcggt 459
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>ref|XM_478764.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1472

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 150 cgatcccctcgtcgccggcg 169
           ||||||||||||||||||||
Sbjct: 48  cgatcccctcgtcgccggcg 67
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>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
              complete sequence
          Length = 147381

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      gtttgacctctcatcttatt 25
              ||||||||||||||||||||
Sbjct: 129021 gtttgacctctcatcttatt 129040
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>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     gtttgacctctcatcttatt 25
             ||||||||||||||||||||
Sbjct: 14770 gtttgacctctcatcttatt 14789
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 153      tcccctcgtcgccggcgacggcgg 176
                ||||||||||||||||| ||||||
Sbjct: 14162748 tcccctcgtcgccggcgccggcgg 14162771
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>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0012F18, from chromosome 3, complete sequence
          Length = 122903

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 153   tcccctcgtcgccggcgacggcgg 176
             ||||||||||||||||| ||||||
Sbjct: 37039 tcccctcgtcgccggcgccggcgg 37062
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>gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome 8, complete sequence
          Length = 199032

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 124    gttatatatctctcacatgtcagc 147
              ||||||||||| ||||||||||||
Sbjct: 173426 gttatatatctatcacatgtcagc 173449
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 6        gtttgacctctcatcttatt 25
                ||||||||||||||||||||
Sbjct: 11484767 gtttgacctctcatcttatt 11484748
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 150      cgatcccctcgtcgccggcg 169
                ||||||||||||||||||||
Sbjct: 22867465 cgatcccctcgtcgccggcg 22867484
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 153      tcccctcgtcgccggcgacggcgg 176
                ||||||||||||||||| ||||||
Sbjct: 14157723 tcccctcgtcgccggcgccggcgg 14157746
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    tcgtcgccggcgacggcggt 177
              ||||||||||||||||||||
Sbjct: 631577 tcgtcgccggcgacggcggt 631596
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>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032H19
          Length = 126434

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   tcgtcgccggcgacggcggt 177
             ||||||||||||||||||||
Sbjct: 15321 tcgtcgccggcgacggcggt 15340
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>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439B06
          Length = 135991

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    tcgtcgccggcgacggcggt 177
              ||||||||||||||||||||
Sbjct: 106182 tcgtcgccggcgacggcggt 106201
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>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   cgatcccctcgtcgccggcg 169
             ||||||||||||||||||||
Sbjct: 60732 cgatcccctcgtcgccggcg 60751
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>dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D10, full
           insert sequence
          Length = 1471

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 150 cgatcccctcgtcgccggcg 169
           ||||||||||||||||||||
Sbjct: 47  cgatcccctcgtcgccggcg 66
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>dbj|AK103623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133N12, full
           insert sequence
          Length = 654

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 tcgtcgccggcgacggcggt 177
           ||||||||||||||||||||
Sbjct: 440 tcgtcgccggcgacggcggt 459
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 6        gtttgacctctcatcttatt 25
                ||||||||||||||||||||
Sbjct: 11563956 gtttgacctctcatcttatt 11563937
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>gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complete sequence
          Length = 185158

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 124   gttatatatctctcacatgtcagc 147
             ||||||||||| ||||||||||||
Sbjct: 41286 gttatatatctatcacatgtcagc 41309


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,034,216
Number of Sequences: 3902068
Number of extensions: 2034216
Number of successful extensions: 48867
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 48505
Number of HSP's gapped (non-prelim): 365
length of query: 289
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 267
effective length of database: 17,147,199,772
effective search space: 4578302339124
effective search space used: 4578302339124
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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