ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast65f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX901899.9| Zebrafish DNA sequence from clone DKEY-255N6 in ... 42 0.69
2dbj|AP005481.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 0.69
3emb|AL845283.4| Mouse DNA sequence from clone RP23-151F21 on chr... 42 0.69
4gb|AC158553.13| Mus musculus chromosome 8, clone RP23-349E13, co... 40 2.7
5gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, com... 40 2.7

>emb|BX901899.9| Zebrafish DNA sequence from clone DKEY-255N6 in linkage group 16,
             complete sequence
          Length = 127034

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 30    gagaacaaaccaatcaacaaa 50
             |||||||||||||||||||||
Sbjct: 36855 gagaacaaaccaatcaacaaa 36835



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>dbj|AP005481.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-161I6, complete
             sequence
          Length = 56000

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 29    ggagaacaaaccaatcaacaaagac 53
             |||||||||||||| ||||||||||
Sbjct: 47468 ggagaacaaaccaaccaacaaagac 47444



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>emb|AL845283.4| Mouse DNA sequence from clone RP23-151F21 on chromosome 2, complete
             sequence
          Length = 178403

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 33    aacaaaccaatcaacaaagac 53
             |||||||||||||||||||||
Sbjct: 11892 aacaaaccaatcaacaaagac 11872



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>gb|AC158553.13| Mus musculus chromosome 8, clone RP23-349E13, complete sequence
          Length = 213309

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 33   aacaaaccaatcaacaaaga 52
            ||||||||||||||||||||
Sbjct: 4954 aacaaaccaatcaacaaaga 4935



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>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence
          Length = 198967

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     aacaaaccaatcaacaaaga 52
              ||||||||||||||||||||
Sbjct: 188210 aacaaaccaatcaacaaaga 188191


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,327,510
Number of Sequences: 3902068
Number of extensions: 1327510
Number of successful extensions: 103706
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103694
Number of HSP's gapped (non-prelim): 12
length of query: 216
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 194
effective length of database: 17,147,199,772
effective search space: 3326556755768
effective search space used: 3326556755768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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