>DCAM_TRYCR (O76240) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 370

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 262 SNIDSLASQFQSVGLEGTYYPREALLTRSATSVSIGY 152
           S++  L  + Q+VG+E  YYP+  L  R+    + GY
Sbjct: 310 SDVGRLYQKGQNVGVEAEYYPKYELQNRTVNEFAPGY 346

>CSKP_RAT (Q62915) Peripheral plasma membrane protein CASK (EC 2.7.11.1)|
           (Calcium/calmodulin-dependent serine protein kinase)
          Length = 909

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -3

Query: 161 YRLSSTYLQRTTQQWQWTHFWAADREKFTQERYLLIHNKDMPSF 30
           +R++   +++T Q+ Q +  W   ++K  +++YL  HN D+ ++
Sbjct: 668 WRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNADLVTY 711

>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)|
            (153 kDa nucleoporin)
          Length = 1468

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 232  QSVGLEGTYYPREALLTRSATSVSIGYQA---PTFRGLHSNGSGPIFGQQTERSLLRSDT 62
            QS G      P    ++ S    S G Q    PTF  + S+   P+FGQQ  +S   S T
Sbjct: 1322 QSQGASQPNPPSFGSISSSTALFSAGSQPVPPPTFGTVSSSSQPPVFGQQPSQSAFGSGT 1381

>GLYM_ASHGO (Q758F0) Serine hydroxymethyltransferase, mitochondrial precursor|
           (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT)
          Length = 497

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 156 AIKHLPSEDYTAMAVDPFLGSRPREVYSGAIPFDTQQRY 40
           +I  +PSE++T++AV   LGS  +  YS   P    QRY
Sbjct: 61  SITLIPSENFTSVAVMNLLGSEMQNKYSEGYP---GQRY 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,749,626
Number of Sequences: 219361
Number of extensions: 588292
Number of successful extensions: 1583
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)