ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast65e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ867403.1| Zea mays mRNA for glycosyltransferase (a4 gene) 333 3e-88
2emb|AJ867401.1| Sorghum bicolor mRNA for glycosyltransferase (a4... 317 2e-83
3emb|AJ867402.1| Saccharum officinarum mRNA for glycosyltransfera... 246 5e-62
4ref|NM_197134.1| Oryza sativa (japonica cultivar-group) unknown ... 220 3e-54
5gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 geno... 220 3e-54
6dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 220 3e-54
7dbj|AK109476.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 3e-54
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 220 3e-54
9gb|AY596544.1| Saccharum officinarum clone SCCCCL3140E04, comple... 210 3e-51
10emb|AJ867404.1| Triticum aestivum partial mRNA for glycosyltrans... 115 1e-22
11ref|XM_465334.1| Oryza sativa (japonica cultivar-group), mRNA 109 7e-21
12ref|XM_506798.1| PREDICTED Oryza sativa (japonica cultivar-group... 109 7e-21
13ref|XM_465333.1| Oryza sativa (japonica cultivar-group), mRNA 109 7e-21
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
15dbj|AP005865.3| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
16dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
17dbj|AK103231.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 7e-21
18dbj|AK100151.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 7e-21
19dbj|AK063938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 7e-21
20ref|XM_464042.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
21ref|XM_464043.2| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
22gb|AF264730.1|AF264730 Oryza sativa microsatellite 23CAC sequence 62 2e-06
23dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
24dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
25dbj|AK119583.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
26dbj|AK065605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
27dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
28dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
29gb|AC024474.8| Homo sapiens chromosome 15, clone RP11-686I6, com... 44 0.36
30emb|AL031388.1|HS737M10 Human DNA sequence from clone RP4-737M10... 42 1.4
31gb|AY947301.1| Oryza sativa microRNA MIR487d precursor, gene, pa... 42 1.4
32gb|AE000657.1| Aquifex aeolicus VF5, complete genome 42 1.4
33ref|XM_950896.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.5
34ref|XM_327867.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.5
35ref|XM_709573.1| Candida albicans SC5314 putative cell wall adhe... 40 5.5
36ref|XM_709479.1| Candida albicans SC5314 putative cell wall adhe... 40 5.5
37gb|AC156941.3| Mus musculus BAC clone RP23-25D8 from chromosome ... 40 5.5
38gb|AF414112.1| Candida albicans putative cell wall protein FLO11... 40 5.5
39emb|AL161783.20| Human DNA sequence from clone RP11-334P12 on ch... 40 5.5
40emb|AL139381.24| Human DNA sequence from clone RP11-74A12 on chr... 40 5.5
41emb|BX294023.1|NCB20D17 Neurospora crassa DNA linkage group V BA... 40 5.5
42emb|BX248359.1| Corynebacterium diphtheriae gravis NCTC13129, co... 40 5.5
43gb|AF356870.1| Candida albicans putative regulatory protein (CPH... 40 5.5
44gb|AC102799.9| Homo sapiens chromosome 17, clone CTD-2248E4, com... 40 5.5
45gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 40 5.5
46gb|AC145979.4| Gallus gallus BAC clone CH261-10P22 from chromoso... 40 5.5
47emb|X60018.1|HSP53009 Human mRNA for mutated p53 transformation ... 40 5.5 
>emb|AJ867403.1| Zea mays mRNA for glycosyltransferase (a4 gene)
          Length = 1514

 Score =  333 bits (168), Expect = 3e-88
 Identities = 207/220 (94%)
 Strand = Plus / Minus

                                                                        
Query: 191  aatcgtcccggccgtgcggcagcatcttgagtgcctggaggaaggtcttcttgaggcggc 250
            ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 1495 aatcgtcccggccgtgcggcagcatcttgagcgcctggaggaaggtgttcttgaggcggc 1436

                                                                        
Query: 251  cgaggtgcggccggacgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccct 310
            | ||||||||||| |||||||||||||| ||||| |||||||||||||||| ||| ||||
Sbjct: 1435 ccaggtgcggccgcacgttctgcttgtccaggtacgtggtcttgagcgcgttccacccct 1376

                                                                        
Query: 311  gcttgtggatggccatggggtccttgagcaccaggtggtcgctggggtactgctcgctca 370
            ||||||||||||||||||||||| | |||||| |||| ||||| ||||||||||||||||
Sbjct: 1375 gcttgtggatggccatggggtccctcagcaccgggtgatcgctcgggtactgctcgctca 1316

                                                    
Query: 371  gcgtcgtctcgtccagctgcaccacgtactccaggtagtg 410
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1315 gcgtcgtctcgtccagctgcaccacgtactccaggtagtg 1276
to top
>emb|AJ867401.1| Sorghum bicolor mRNA for glycosyltransferase (a4 gene)
          Length = 1476

 Score =  317 bits (160), Expect = 2e-83
 Identities = 205/220 (93%)
 Strand = Plus / Minus

                                                                        
Query: 191  aatcgtcccggccgtgcggcagcatcttgagtgcctggaggaaggtcttcttgaggcggc 250
            ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 1474 aatcgtcccggccgtgcggcagcatcttgagcgcctgtaggaaggtgttcttgaggcggc 1415

                                                                        
Query: 251  cgaggtgcggccggacgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccct 310
            | |||||||| || |||||||||||||| ||||| |||||||||||||||| ||| ||||
Sbjct: 1414 ccaggtgcgggcgcacgttctgcttgtccaggtacgtggtcttgagcgcgttccacccct 1355

                                                                        
Query: 311  gcttgtggatggccatggggtccttgagcaccaggtggtcgctggggtactgctcgctca 370
            ||||||||||||||||||||||| | |||||| |||| ||||| ||||||||||||||||
Sbjct: 1354 gcttgtggatggccatggggtccctcagcaccgggtgatcgctcgggtactgctcgctca 1295

                                                    
Query: 371  gcgtcgtctcgtccagctgcaccacgtactccaggtagtg 410
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 gcgtcgtctcgtccagctgcaccacgtactccaggtagtg 1255
to top
>emb|AJ867402.1| Saccharum officinarum mRNA for glycosyltransferase (a4 gene)
          Length = 1580

 Score =  246 bits (124), Expect = 5e-62
 Identities = 196/220 (89%)
 Strand = Plus / Minus

                                                                        
Query: 191  aatcgtcccggccgtgcggcagcatcttgagtgcctggaggaaggtcttcttgaggcggc 250
            ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 1578 aatcgtcccggccgtgcggcagcatcttgagcgcctgtaggaaggtgttcttgaggcggc 1519

                                                                        
Query: 251  cgaggtgcggccggacgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccct 310
            | |||||||| || |||||||||||||| ||||| ||    ||||||||     | ||||
Sbjct: 1518 ccaggtgcgggcgcacgttctgcttgtccaggtacgtccggttgagcgcccggtacccct 1459

                                                                        
Query: 311  gcttgtggatggccatggggtccttgagcaccaggtggtcgctggggtactgctcgctca 370
            ||||||||||||||||||||||| | |||||| |||| ||||| ||||||||||||||||
Sbjct: 1458 gcttgtggatggccatggggtccctcagcaccgggtgatcgctcgggtactgctcgctca 1399

                                                    
Query: 371  gcgtcgtctcgtccagctgcaccacgtactccaggtagtg 410
            ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1398 gcgtcgtctcgtccatctgcaccacgtactccaggtagtg 1359
to top
>ref|NM_197134.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0051D19.6), mRNA
          Length = 1762

 Score =  220 bits (111), Expect = 3e-54
 Identities = 180/203 (88%)
 Strand = Plus / Minus

                                                                        
Query: 208  ggcagcatcttgagtgcctggaggaaggtcttcttgaggcggccgaggtgcggccggacg 267
            ||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 1737 ggcagcagcttgagggcctggaggaaggtgttcttgaggcggccgagatgcggccggaca 1678

                                                                        
Query: 268  ttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtggatggccatg 327
            ||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| 
Sbjct: 1677 ttctgcttgtcgaggtaagtggtcttgagagcttcccagccttgcttgtggatggccata 1618

                                                                        
Query: 328  gggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtctcgtccagc 387
            |||||    |||||  |||| |||  ||||||||||||||||||||| |||||||| |||
Sbjct: 1617 gggtctcgcagcactgggtgatcggcggggtactgctcgctcagcgttgtctcgtcaagc 1558

                                   
Query: 388  tgcaccacgtactccaggtagtg 410
            |||||  ||||||||||||||||
Sbjct: 1557 tgcacggcgtactccaggtagtg 1535
to top
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete
             sequence
          Length = 131984

 Score =  220 bits (111), Expect = 3e-54
 Identities = 180/203 (88%)
 Strand = Plus / Minus

                                                                         
Query: 208   ggcagcatcttgagtgcctggaggaaggtcttcttgaggcggccgaggtgcggccggacg 267
             ||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 44956 ggcagcagcttgagggcctggaggaaggtgttcttgaggcggccgagatgcggccggaca 44897

                                                                         
Query: 268   ttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtggatggccatg 327
             ||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| 
Sbjct: 44896 ttctgcttgtcgaggtaagtggtcttgagagcttcccagccttgcttgtggatggccata 44837

                                                                         
Query: 328   gggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtctcgtccagc 387
             |||||    |||||  |||| |||  ||||||||||||||||||||| |||||||| |||
Sbjct: 44836 gggtctcgcagcactgggtgatcggcggggtactgctcgctcagcgttgtctcgtcaagc 44777

                                    
Query: 388   tgcaccacgtactccaggtagtg 410
             |||||  ||||||||||||||||
Sbjct: 44776 tgcacggcgtactccaggtagtg 44754
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  220 bits (111), Expect = 3e-54
 Identities = 180/203 (88%)
 Strand = Plus / Plus

                                                                            
Query: 208      ggcagcatcttgagtgcctggaggaaggtcttcttgaggcggccgaggtgcggccggacg 267
                ||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 18168172 ggcagcagcttgagggcctggaggaaggtgttcttgaggcggccgagatgcggccggaca 18168231

                                                                            
Query: 268      ttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtggatggccatg 327
                ||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| 
Sbjct: 18168232 ttctgcttgtcgaggtaagtggtcttgagagcttcccagccttgcttgtggatggccata 18168291

                                                                            
Query: 328      gggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtctcgtccagc 387
                |||||    |||||  |||| |||  ||||||||||||||||||||| |||||||| |||
Sbjct: 18168292 gggtctcgcagcactgggtgatcggcggggtactgctcgctcagcgttgtctcgtcaagc 18168351

                                       
Query: 388      tgcaccacgtactccaggtagtg 410
                |||||  ||||||||||||||||
Sbjct: 18168352 tgcacggcgtactccaggtagtg 18168374
to top
>dbj|AK109476.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C03, full
            insert sequence
          Length = 2019

 Score =  220 bits (111), Expect = 3e-54
 Identities = 180/203 (88%)
 Strand = Plus / Minus

                                                                        
Query: 208  ggcagcatcttgagtgcctggaggaaggtcttcttgaggcggccgaggtgcggccggacg 267
            ||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 1647 ggcagcagcttgagggcctggaggaaggtgttcttgaggcggccgagatgcggccggaca 1588

                                                                        
Query: 268  ttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtggatggccatg 327
            ||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| 
Sbjct: 1587 ttctgcttgtcgaggtaagtggtcttgagagcttcccagccttgcttgtggatggccata 1528

                                                                        
Query: 328  gggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtctcgtccagc 387
            |||||    |||||  |||| |||  ||||||||||||||||||||| |||||||| |||
Sbjct: 1527 gggtctcgcagcactgggtgatcggcggggtactgctcgctcagcgttgtctcgtcaagc 1468

                                   
Query: 388  tgcaccacgtactccaggtagtg 410
            |||||  ||||||||||||||||
Sbjct: 1467 tgcacggcgtactccaggtagtg 1445
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  220 bits (111), Expect = 3e-54
 Identities = 180/203 (88%)
 Strand = Plus / Plus

                                                                            
Query: 208      ggcagcatcttgagtgcctggaggaaggtcttcttgaggcggccgaggtgcggccggacg 267
                ||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 18177425 ggcagcagcttgagggcctggaggaaggtgttcttgaggcggccgagatgcggccggaca 18177484

                                                                            
Query: 268      ttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtggatggccatg 327
                ||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| 
Sbjct: 18177485 ttctgcttgtcgaggtaagtggtcttgagagcttcccagccttgcttgtggatggccata 18177544

                                                                            
Query: 328      gggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtctcgtccagc 387
                |||||    |||||  |||| |||  ||||||||||||||||||||| |||||||| |||
Sbjct: 18177545 gggtctcgcagcactgggtgatcggcggggtactgctcgctcagcgttgtctcgtcaagc 18177604

                                       
Query: 388      tgcaccacgtactccaggtagtg 410
                |||||  ||||||||||||||||
Sbjct: 18177605 tgcacggcgtactccaggtagtg 18177627
to top
>gb|AY596544.1| Saccharum officinarum clone SCCCCL3140E04, complete sequence
          Length = 1525

 Score =  210 bits (106), Expect = 3e-51
 Identities = 136/146 (93%)
 Strand = Plus / Minus

                                                                        
Query: 265  acgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtggatggcc 324
            |||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1525 acgttctgcttgtccaggtacgtggtcttgagcgcgttccacccctgcttgtggatggcc 1466

                                                                        
Query: 325  atggggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtctcgtcc 384
            ||||||||| | |||||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 1465 atggggtccctcagcaccgggtgatcgctcgggtactgctcgctcagcgtcgtctcgtcc 1406

                                      
Query: 385  agctgcaccacgtactccaggtagtg 410
            | ||||||||||||||||||||||||
Sbjct: 1405 atctgcaccacgtactccaggtagtg 1380
to top
>emb|AJ867404.1| Triticum aestivum partial mRNA for glycosyltransferase (a4 gene)
          Length = 1425

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Minus

                                                                        
Query: 208  ggcagcatcttgagtgcctggaggaaggtcttcttgaggcggccgaggtgcggccggacg 267
            ||||||| |||||| ||||  ||||||||   |||||| | ||| ||||||||||  |||
Sbjct: 1291 ggcagcagcttgagcgcctccaggaaggtgagcttgagcctgcccaggtgcggcctcacg 1232

                                                                        
Query: 268  ttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtggatggccatg 327
            |||||||| || |||||    ||||||||||| ||||| || |||||||||||||  |  
Sbjct: 1231 ttctgcttctccaggtacaccgtcttgagcgcctcccacccttgcttgtggatggagagc 1172

                                                                        
Query: 328  gggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtctcgtccagc 387
            |||||  |||||||| |||||||  ||||||||||||||||||||||||||||||| |||
Sbjct: 1171 gggtctgtgagcaccgggtggtctttggggtactgctcgctcagcgtcgtctcgtcgagc 1112

              
Query: 388  tg 389
            ||
Sbjct: 1111 tg 1110
to top
>ref|XM_465334.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2105

 Score =  109 bits (55), Expect = 7e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  ggccggacgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtgg 318
            ||||| || ||||||||||| ||||||    ||||||| |||| ||||||||||||||||
Sbjct: 1486 ggccgcacattctgcttgtctaggtagaccatcttgagagcgttccagccctgcttgtgg 1427

                                                                        
Query: 319  atggccatggggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtc 378
            ||||    |||||||||||||||| ||| |||  ||||||| ||||||||||||||||||
Sbjct: 1426 atggagtaggggtccttgagcaccgggtcgtccttggggtattgctcgctcagcgtcgtc 1367

                       
Query: 379  tcgtccagctg 389
            ||||| |||||
Sbjct: 1366 tcgtcgagctg 1356
to top
>ref|XM_506798.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1116_E03.25-2
            mRNA
          Length = 2752

 Score =  109 bits (55), Expect = 7e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  ggccggacgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtgg 318
            ||||| || ||||||||||| ||||||    ||||||| |||| ||||||||||||||||
Sbjct: 1730 ggccgcacattctgcttgtctaggtagaccatcttgagagcgttccagccctgcttgtgg 1671

                                                                        
Query: 319  atggccatggggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtc 378
            ||||    |||||||||||||||| ||| |||  ||||||| ||||||||||||||||||
Sbjct: 1670 atggagtaggggtccttgagcaccgggtcgtccttggggtattgctcgctcagcgtcgtc 1611

                       
Query: 379  tcgtccagctg 389
            ||||| |||||
Sbjct: 1610 tcgtcgagctg 1600
to top
>ref|XM_465333.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2103

 Score =  109 bits (55), Expect = 7e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  ggccggacgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtgg 318
            ||||| || ||||||||||| ||||||    ||||||| |||| ||||||||||||||||
Sbjct: 1736 ggccgcacattctgcttgtctaggtagaccatcttgagagcgttccagccctgcttgtgg 1677

                                                                        
Query: 319  atggccatggggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtc 378
            ||||    |||||||||||||||| ||| |||  ||||||| ||||||||||||||||||
Sbjct: 1676 atggagtaggggtccttgagcaccgggtcgtccttggggtattgctcgctcagcgtcgtc 1617

                       
Query: 379  tcgtccagctg 389
            ||||| |||||
Sbjct: 1616 tcgtcgagctg 1606
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  109 bits (55), Expect = 7e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                            
Query: 259      ggccggacgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtgg 318
                ||||| || ||||||||||| ||||||    ||||||| |||| ||||||||||||||||
Sbjct: 13496797 ggccgcacattctgcttgtctaggtagaccatcttgagagcgttccagccctgcttgtgg 13496738

                                                                            
Query: 319      atggccatggggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtc 378
                ||||    |||||||||||||||| ||| |||  ||||||| ||||||||||||||||||
Sbjct: 13496737 atggagtaggggtccttgagcaccgggtcgtccttggggtattgctcgctcagcgtcgtc 13496678

                           
Query: 379      tcgtccagctg 389
                ||||| |||||
Sbjct: 13496677 tcgtcgagctg 13496667



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                  
Query: 267     gttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtg 317
               |||||||||||| ||||| |  |||||||||||||||||||| ||||||||
Sbjct: 1874435 gttctgcttgtccaggtacgccgtcttgagcgcgtcccagccttgcttgtg 1874385
to top
>dbj|AP005865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0037J12
          Length = 118553

 Score =  109 bits (55), Expect = 7e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                         
Query: 259   ggccggacgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtgg 318
             ||||| || ||||||||||| ||||||    ||||||| |||| ||||||||||||||||
Sbjct: 12102 ggccgcacattctgcttgtctaggtagaccatcttgagagcgttccagccctgcttgtgg 12043

                                                                         
Query: 319   atggccatggggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtc 378
             ||||    |||||||||||||||| ||| |||  ||||||| ||||||||||||||||||
Sbjct: 12042 atggagtaggggtccttgagcaccgggtcgtccttggggtattgctcgctcagcgtcgtc 11983

                        
Query: 379   tcgtccagctg 389
             ||||| |||||
Sbjct: 11982 tcgtcgagctg 11972
to top
>dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1116_E03
          Length = 126845

 Score =  109 bits (55), Expect = 7e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                         
Query: 259   ggccggacgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtgg 318
             ||||| || ||||||||||| ||||||    ||||||| |||| ||||||||||||||||
Sbjct: 82726 ggccgcacattctgcttgtctaggtagaccatcttgagagcgttccagccctgcttgtgg 82667

                                                                         
Query: 319   atggccatggggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtc 378
             ||||    |||||||||||||||| ||| |||  ||||||| ||||||||||||||||||
Sbjct: 82666 atggagtaggggtccttgagcaccgggtcgtccttggggtattgctcgctcagcgtcgtc 82607

                        
Query: 379   tcgtccagctg 389
             ||||| |||||
Sbjct: 82606 tcgtcgagctg 82596
to top
>dbj|AK103231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123E06, full
            insert sequence
          Length = 2101

 Score =  109 bits (55), Expect = 7e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  ggccggacgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtgg 318
            ||||| || ||||||||||| ||||||    ||||||| |||| ||||||||||||||||
Sbjct: 1734 ggccgcacattctgcttgtctaggtagaccatcttgagagcgttccagccctgcttgtgg 1675

                                                                        
Query: 319  atggccatggggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtc 378
            ||||    |||||||||||||||| ||| |||  ||||||| ||||||||||||||||||
Sbjct: 1674 atggagtaggggtccttgagcaccgggtcgtccttggggtattgctcgctcagcgtcgtc 1615

                       
Query: 379  tcgtccagctg 389
            ||||| |||||
Sbjct: 1614 tcgtcgagctg 1604
to top
>dbj|AK100151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023015H06, full
            insert sequence
          Length = 2751

 Score =  109 bits (55), Expect = 7e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  ggccggacgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtgg 318
            ||||| || ||||||||||| ||||||    ||||||| |||| ||||||||||||||||
Sbjct: 1729 ggccgcacattctgcttgtctaggtagaccatcttgagagcgttccagccctgcttgtgg 1670

                                                                        
Query: 319  atggccatggggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtc 378
            ||||    |||||||||||||||| ||| |||  ||||||| ||||||||||||||||||
Sbjct: 1669 atggagtaggggtccttgagcaccgggtcgtccttggggtattgctcgctcagcgtcgtc 1610

                       
Query: 379  tcgtccagctg 389
            ||||| |||||
Sbjct: 1609 tcgtcgagctg 1599
to top
>dbj|AK063938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D12, full
            insert sequence
          Length = 2105

 Score =  109 bits (55), Expect = 7e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  ggccggacgttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtgg 318
            ||||| || ||||||||||| ||||||    ||||||| |||| ||||||||||||||||
Sbjct: 1486 ggccgcacattctgcttgtctaggtagaccatcttgagagcgttccagccctgcttgtgg 1427

                                                                        
Query: 319  atggccatggggtccttgagcaccaggtggtcgctggggtactgctcgctcagcgtcgtc 378
            ||||    |||||||||||||||| ||| |||  ||||||| ||||||||||||||||||
Sbjct: 1426 atggagtaggggtccttgagcaccgggtcgtccttggggtattgctcgctcagcgtcgtc 1367

                       
Query: 379  tcgtccagctg 389
            ||||| |||||
Sbjct: 1366 tcgtcgagctg 1356
to top
>ref|XM_464042.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1955

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                               
Query: 267  gttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtg 317
            |||||||||||| ||||| |  |||||||||||||||||||| ||||||||
Sbjct: 1570 gttctgcttgtccaggtacgccgtcttgagcgcgtcccagccttgcttgtg 1520
to top
>ref|XM_464043.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1965

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                               
Query: 267  gttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtg 317
            |||||||||||| ||||| |  |||||||||||||||||||| ||||||||
Sbjct: 1645 gttctgcttgtccaggtacgccgtcttgagcgcgtcccagccttgcttgtg 1595
to top
>gb|AF264730.1|AF264730 Oryza sativa microsatellite 23CAC sequence
          Length = 678

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                              
Query: 267 gttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtg 317
           |||||||||||| ||||| |  |||||||||||||||||||| ||||||||
Sbjct: 287 gttctgcttgtccaggtacgccgtcttgagcgcgtcccagccttgcttgtg 237
to top
>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0081C13
          Length = 144624

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 267   gttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtg 317
             |||||||||||| ||||| |  |||||||||||||||||||| ||||||||
Sbjct: 13996 gttctgcttgtccaggtacgccgtcttgagcgcgtcccagccttgcttgtg 13946
to top
>dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0585B01
          Length = 133231

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                 
Query: 267    gttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtg 317
              |||||||||||| ||||| |  |||||||||||||||||||| ||||||||
Sbjct: 111079 gttctgcttgtccaggtacgccgtcttgagcgcgtcccagccttgcttgtg 111029
to top
>dbj|AK119583.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C05, full
            insert sequence
          Length = 1965

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                               
Query: 267  gttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtg 317
            |||||||||||| ||||| |  |||||||||||||||||||| ||||||||
Sbjct: 1645 gttctgcttgtccaggtacgccgtcttgagcgcgtcccagccttgcttgtg 1595
to top
>dbj|AK065605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033I23, full
            insert sequence
          Length = 1955

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                               
Query: 267  gttctgcttgtcgaggtaggtggtcttgagcgcgtcccagccctgcttgtg 317
            |||||||||||| ||||| |  |||||||||||||||||||| ||||||||
Sbjct: 1570 gttctgcttgtccaggtacgccgtcttgagcgcgtcccagccttgcttgtg 1520
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 303      ccagccctgcttgtggatggccatggggtccttga 337
                ||||||||||  |||||||||||||||||||||||
Sbjct: 15385419 ccagccctgcgcgtggatggccatggggtccttga 15385385
to top
>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0613F06
          Length = 184289

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 303   ccagccctgcttgtggatggccatggggtccttga 337
             ||||||||||  |||||||||||||||||||||||
Sbjct: 52934 ccagccctgcgcgtggatggccatggggtccttga 52900
to top
>gb|AC024474.8| Homo sapiens chromosome 15, clone RP11-686I6, complete sequence
          Length = 194973

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 300   gtcccagccctgcttgtggatg 321
             ||||||||||||||||||||||
Sbjct: 22568 gtcccagccctgcttgtggatg 22547
to top
>emb|AL031388.1|HS737M10 Human DNA sequence from clone RP4-737M10 on chromosome Xq23 Contains
             the 5' end of the TRPC5 gene for transient receptor
             potential cation channel subfamily C member 5, complete
             sequence
          Length = 107172

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    ctctaaaaacagagttagagt 31
             |||||||||||||||||||||
Sbjct: 34967 ctctaaaaacagagttagagt 34947
to top
>gb|AY947301.1| Oryza sativa microRNA MIR487d precursor, gene, partial sequence
          Length = 490

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 383 ccagctgcaccacgtactcca 403
           |||||||||||||||||||||
Sbjct: 390 ccagctgcaccacgtactcca 370
to top
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 60     gaaaacagagaaaaggttata 80
              |||||||||||||||||||||
Sbjct: 158653 gaaaacagagaaaaggttata 158673
to top
>ref|XM_950896.1| Neurospora crassa OR74A hypothetical protein (NCU01429.1) partial
           mRNA
          Length = 1290

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 ggaggaaggtcttcttgagg 246
           ||||||||||||||||||||
Sbjct: 793 ggaggaaggtcttcttgagg 774
to top
>ref|XM_327867.1| Neurospora crassa OR74A hypothetical protein (NCU01429.1) partial
           mRNA
          Length = 1290

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 ggaggaaggtcttcttgagg 246
           ||||||||||||||||||||
Sbjct: 793 ggaggaaggtcttcttgagg 774
to top
>ref|XM_709573.1| Candida albicans SC5314 putative cell wall adhesin (CaO19.8979), mRNA
          Length = 3366

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 382  tccagctgcaccacgtactccagg 405
            ||||||||||||| ||||||||||
Sbjct: 2970 tccagctgcaccaggtactccagg 2993
to top
>ref|XM_709479.1| Candida albicans SC5314 putative cell wall adhesin (CaO19.1401), mRNA
          Length = 1962

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 382  tccagctgcaccacgtactccagg 405
            ||||||||||||| ||||||||||
Sbjct: 1566 tccagctgcaccaggtactccagg 1589
to top
>gb|AC156941.3| Mus musculus BAC clone RP23-25D8 from chromosome 14, complete sequence
          Length = 214940

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     gaaaacagagaaaaggttat 79
              ||||||||||||||||||||
Sbjct: 112207 gaaaacagagaaaaggttat 112226
to top
>gb|AF414112.1| Candida albicans putative cell wall protein FLO11p gene, complete cds
          Length = 3677

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 382  tccagctgcaccacgtactccagg 405
            ||||||||||||| ||||||||||
Sbjct: 3245 tccagctgcaccaggtactccagg 3268
to top
>emb|AL161783.20| Human DNA sequence from clone RP11-334P12 on chromosome 9 Contains the
             ACO1 gene for aconitase 1, soluble and the 3' end of the
             gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
             (RIG-I), complete sequence
          Length = 111692

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    aacagagaaaaggttataga 82
             ||||||||||||||||||||
Sbjct: 14697 aacagagaaaaggttataga 14716
to top
>emb|AL139381.24| Human DNA sequence from clone RP11-74A12 on chromosome 13q31.2-32.2
             Contains the 3' end of the ABCC4 gene for ATP-binding
             cassette, sub-family C (CFTR/MRP), member 4 and 2 CpG
             islands, complete sequence
          Length = 116021

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 102   ttttgtacactattactgatgata 125
             |||||||||| |||||||||||||
Sbjct: 55893 ttttgtacacaattactgatgata 55916
to top
>emb|BX294023.1|NCB20D17 Neurospora crassa DNA linkage group V BAC clone B20D17
          Length = 71593

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  ggaggaaggtcttcttgagg 246
            ||||||||||||||||||||
Sbjct: 1433 ggaggaaggtcttcttgagg 1414
to top
>emb|BX248359.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
              6/8
          Length = 349895

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    tcccgcgatgatggggacga 170
              ||||||||||||||||||||
Sbjct: 159546 tcccgcgatgatggggacga 159565
to top
>gb|AF356870.1| Candida albicans putative regulatory protein (CPH3) gene, complete
            cds
          Length = 2298

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 382  tccagctgcaccacgtactccagg 405
            ||||||||||||| ||||||||||
Sbjct: 1841 tccagctgcaccaggtactccagg 1864
to top
>gb|AC102799.9| Homo sapiens chromosome 17, clone CTD-2248E4, complete sequence
          Length = 122132

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   gaggcggccgaggtgcggccggac 266
             ||||||||||||| ||||||||||
Sbjct: 18423 gaggcggccgaggggcggccggac 18400
to top
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    acttgtcctctgcatccatt 103
             ||||||||||||||||||||
Sbjct: 74886 acttgtcctctgcatccatt 74905
to top
>gb|AC145979.4| Gallus gallus BAC clone CH261-10P22 from chromosome unknown, complete
            sequence
          Length = 243329

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    atgctctaaaaacagagtta 27
            ||||||||||||||||||||
Sbjct: 9410 atgctctaaaaacagagtta 9391
to top
>emb|X60018.1|HSP53009 Human mRNA for mutated p53 transformation suppressor gene
          Length = 1179

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 309 ctgcttgtggatggccatgg 328
           ||||||||||||||||||||
Sbjct: 495 ctgcttgtggatggccatgg 476


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,898,118
Number of Sequences: 3902068
Number of extensions: 2898118
Number of successful extensions: 60169
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59953
Number of HSP's gapped (non-prelim): 191
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top