ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast65c06 |
|---|---|
| Clone Library Name | barley_pub |
>PSB5A_ARATH (O23717) Proteasome subunit beta type 5-A precursor (EC 3.4.25.1)| (20S proteasome beta subunit E-1) (Proteasome epsilon-1 chain) (Proteasome component E) Length = 274 Score = 143 bits (360), Expect = 2e-34 Identities = 66/84 (78%), Positives = 73/84 (86%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 GS YAYG+LD GYK++MSVEEA+ELARR+IYHATFRDGASGG SVY+VGP+GW KLSGD Sbjct: 188 GSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPEGWTKLSGD 247 Query: 257 DVGELHYHYYPVQAAPVEQEMAEA 186 DVGELHYHYYPV A EQ M EA Sbjct: 248 DVGELHYHYYPVAPATAEQVMEEA 271
>PSB5_SPIOL (O24361) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (20S proteasome subunit E) (Proteasome epsilon chain) Length = 272 Score = 142 bits (359), Expect = 3e-34 Identities = 65/87 (74%), Positives = 76/87 (87%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 GS YAYG+LD GYK++M+VEEA+ELARRAIYHAT+RDGASGG VSVY+VGPDGWKK++GD Sbjct: 186 GSPYAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVVSVYHVGPDGWKKVTGD 245 Query: 257 DVGELHYHYYPVQAAPVEQEMAEAPSA 177 DVG+LH+ YYPV A VEQEM E A Sbjct: 246 DVGDLHFQYYPVVPATVEQEMVEVVGA 272
>PSB5B_ARATH (Q9LIP2) Proteasome subunit beta type 5-B precursor (EC 3.4.25.1)| (20S proteasome beta subunit E-2) (Proteasome epsilon-2 chain) Length = 273 Score = 139 bits (351), Expect = 2e-33 Identities = 65/84 (77%), Positives = 70/84 (83%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 GS YAYG+LD GYKF+MSVEEA+ELARR+IYHATFRDGASGG SVY+VGP GW KLSGD Sbjct: 188 GSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPQGWTKLSGD 247 Query: 257 DVGELHYHYYPVQAAPVEQEMAEA 186 DVGELHYHYYPV E M EA Sbjct: 248 DVGELHYHYYPVAPITAEHVMEEA 271
>PSB5_MOUSE (O55234) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome epsilon chain) (Macropain epsilon chain) (Multicatalytic endopeptidase complex epsilon chain) (Proteasome subunit X) (Proteasome chain 6) Length = 209 Score = 91.3 bits (225), Expect = 1e-18 Identities = 40/72 (55%), Positives = 55/72 (76%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 GS+YAYG++D GY +++ VEEA +LARRAIY AT+RD SGG V++Y+V DGW ++S D Sbjct: 135 GSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSD 194 Query: 257 DVGELHYHYYPV 222 +V +LH Y V Sbjct: 195 NVADLHDKYSSV 206
>PSB5_HUMAN (P28074) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome epsilon chain) (Macropain epsilon chain) (Multicatalytic endopeptidase complex epsilon chain) (Proteasome subunit X) (Proteasome chain 6) (Proteasome subunit MB1) Length = 208 Score = 90.1 bits (222), Expect = 2e-18 Identities = 38/69 (55%), Positives = 54/69 (78%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 GS+YAYG++D GY +++ VE+A +LARRAIY AT+RD SGG V++Y+V DGW ++S D Sbjct: 135 GSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSD 194 Query: 257 DVGELHYHY 231 +V +LH Y Sbjct: 195 NVADLHEKY 203
>PSB5_RAT (P28075) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome epsilon chain) (Macropain epsilon chain) (Multicatalytic endopeptidase complex epsilon chain) (Proteasome subunit X) (Proteasome chain 6) Length = 208 Score = 89.4 bits (220), Expect = 4e-18 Identities = 38/69 (55%), Positives = 54/69 (78%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 GS+YA+G++D GY +++ VEEA +LARRAIY AT+RD SGG V++Y+V DGW ++S D Sbjct: 135 GSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSD 194 Query: 257 DVGELHYHY 231 +V +LH Y Sbjct: 195 NVADLHDKY 203
>PSB5_CHICK (P34065) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome chain 1) (Macropain chain 1) (Multicatalytic endopeptidase complex chain 1) (Proteasome subunit C1) (Fragment) Length = 256 Score = 82.0 bits (201), Expect = 6e-16 Identities = 39/69 (56%), Positives = 50/69 (72%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 GS YAYG+LD G + +M+ +EA ELARRAI+ A RD SGG V+VY+VGP GW+++S Sbjct: 186 GSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHVGPRGWRRVSSH 245 Query: 257 DVGELHYHY 231 DV LH Y Sbjct: 246 DVAGLHDGY 254
>PSB8_CANFA (Q5W416) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 79.0 bits (193), Expect = 5e-15 Identities = 36/69 (52%), Positives = 49/69 (71%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 GS YAYG++D GY+ ++S EEA EL RRAI +AT RD SGG +++Y++ DGW K+ Sbjct: 203 GSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDSYSGGIINMYHMKEDGWVKVEST 262 Query: 257 DVGELHYHY 231 DV EL + Y Sbjct: 263 DVNELLHQY 271
>PSB8_MOUSE (P28063) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 78.6 bits (192), Expect = 6e-15 Identities = 35/69 (50%), Positives = 49/69 (71%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 G+ YAYG++D GY+ ++S EEA +L RRAI +AT RD SGG V++Y++ DGW K+ Sbjct: 203 GNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVNMYHMKEDGWVKVESS 262 Query: 257 DVGELHYHY 231 DV +L Y Y Sbjct: 263 DVSDLLYKY 271
>PSB8_RAT (P28064) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 78.2 bits (191), Expect = 8e-15 Identities = 35/69 (50%), Positives = 50/69 (72%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 G+ YAYG++D GY+ ++S EEA +LARRAI +AT RD SGG V++Y++ DGW K+ Sbjct: 203 GNTYAYGVMDSGYRQDLSPEEAYDLARRAIVYATHRDSYSGGVVNMYHMKKDGWVKVEST 262 Query: 257 DVGELHYHY 231 DV +L + Y Sbjct: 263 DVSDLLHKY 271
>PSB8_HUMAN (P28062) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 78.2 bits (191), Expect = 8e-15 Identities = 35/69 (50%), Positives = 49/69 (71%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 G+ YAYG++D GY+ N+S EEA +L RRAI +AT RD SGG V++Y++ DGW K+ Sbjct: 203 GNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVEST 262 Query: 257 DVGELHYHY 231 DV +L + Y Sbjct: 263 DVSDLLHQY 271
>PSB5_YEAST (P30656) Proteasome component PRE2 precursor (EC 3.4.25.1)| (Macropain subunit PRE2) (Proteinase YSCE subunit PRE2) (Multicatalytic endopeptidase complex subunit PRE2) Length = 287 Score = 68.6 bits (166), Expect = 7e-12 Identities = 32/67 (47%), Positives = 44/67 (65%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 G +AYG+LD YK+++SVE+A L +R+I A RD SGG V++Y+V DGW Sbjct: 207 GQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNH 266 Query: 257 DVGELHY 237 DVGEL + Sbjct: 267 DVGELFW 273
>PSB5_SCHPO (P30655) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome component pts1) (Macropain subunit pts1) (Multicatalytic endopeptidase complex subunit pts1) Length = 272 Score = 64.3 bits (155), Expect = 1e-10 Identities = 30/65 (46%), Positives = 44/65 (67%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 GS +AYG+LD GY++++S +EA LA+R+I AT RD SGG V++Y++ +GW Sbjct: 192 GSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVNLYHIDENGWVFHGNF 251 Query: 257 DVGEL 243 DV L Sbjct: 252 DVDSL 256
>PSMB_METTE (Q9P992) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 210 Score = 55.8 bits (133), Expect = 4e-08 Identities = 27/62 (43%), Positives = 43/62 (69%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 GS AYG+L++ Y+ NM+V+E +LA RAI++AT RD ASG + V + + +K+L + Sbjct: 141 GSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITKEAFKRLDPE 200 Query: 257 DV 252 +V Sbjct: 201 EV 202
>PSB8_PIG (Q29576) Proteasome subunit beta type 8 (EC 3.4.25.1) (Proteasome| component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) (Fragment) Length = 104 Score = 53.1 bits (126), Expect = 3e-07 Identities = 21/37 (56%), Positives = 31/37 (83%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRD 327 G+ YAYG++D G+++++S+EEA +L RRAI HAT RD Sbjct: 68 GNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRD 104
>PSMB_ARCFU (Q9P996) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 213 Score = 51.2 bits (121), Expect = 1e-06 Identities = 27/65 (41%), Positives = 41/65 (63%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 GSL AYG+L++ + + V+EA ELA RAIY A RD ASG + V + D + + S + Sbjct: 143 GSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPE 202 Query: 257 DVGEL 243 +V ++ Sbjct: 203 EVEQI 207
>PSB6_TOBAC (P93395) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome delta chain) (Tobacco cryptogein-induced protein 7) (tcI 7) Length = 234 Score = 50.8 bits (120), Expect = 1e-06 Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDG--WKKLS 264 GS Y YG D+ +K M+ EEA +L A+ A RDGASGG V + DG K S Sbjct: 144 GSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAIARDGASGGVVRTVTINKDGATRKFYS 203 Query: 263 GDDVGELHYHYYPVQA 216 GD + H PV + Sbjct: 204 GDSLQLWHEELEPVNS 219
>PSB6_ARATH (Q8LD27) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome subunit beta type 1) (20S proteasome beta subunit A-1) (Proteasome component CD) Length = 233 Score = 49.7 bits (117), Expect = 3e-06 Identities = 24/53 (45%), Positives = 32/53 (60%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDG 279 GS Y YG D+ +K NM+ EEA +L +A+ A RDGASGG V + +G Sbjct: 143 GSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVVRTVIINSEG 195
>PSB6_SCHPO (O43063) Probable proteasome subunit beta type 6 precursor (EC| 3.4.25.1) Length = 226 Score = 47.0 bits (110), Expect = 2e-05 Identities = 21/56 (37%), Positives = 33/56 (58%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKK 270 GS + YG D ++ NM+ EEA E + A+ A RDG+SGG + + + DG ++ Sbjct: 155 GSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVILNKDGMER 210
>PSMB_METJA (Q58634) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 224 Score = 47.0 bits (110), Expect = 2e-05 Identities = 25/65 (38%), Positives = 38/65 (58%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 GS AYG+L+ GY +MSVEE +LA A+ A RD SG +S+ + DG K + Sbjct: 139 GSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDE 198 Query: 257 DVGEL 243 ++ ++ Sbjct: 199 EIEKI 203
>PSMB_THEAC (P28061) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 211 Score = 46.2 bits (108), Expect = 4e-05 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYV-GPDGWKKLSG 261 GS + YG+L+ Y M+V+E +L RAI A RD ASGG + V + DG+ +L Sbjct: 138 GSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPT 197 Query: 260 DDV 252 D + Sbjct: 198 DQI 200
>PSMB_PYRHO (O50110) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 207 Score = 46.2 bits (108), Expect = 4e-05 Identities = 25/62 (40%), Positives = 38/62 (61%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 G +AY ILD YK N+++EE +LA +AI A RD SG + V + +G+K+LS Sbjct: 140 GMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEGYKELSDS 199 Query: 257 DV 252 ++ Sbjct: 200 EL 201
>PSB9_RAT (P28077) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 42.7 bits (99), Expect = 4e-04 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDG--WKKLS 264 GS Y YG +D YK M+ EE AI A RDG+SGG + + + DG + + Sbjct: 150 GSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIYLVTITADGVDHRVIL 209 Query: 263 GDDVGELH 240 GD++ + + Sbjct: 210 GDELPKFY 217
>PSMB_SULSO (Q9UXF3) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 208 Score = 42.0 bits (97), Expect = 7e-04 Identities = 22/57 (38%), Positives = 36/57 (63%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKL 267 GS A G+L++ Y M+++EAA+LA+RA++ A RD +G V V + G ++L Sbjct: 144 GSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAIKRDSFTGTGVIVAKIHSKGHEEL 200
>PSB6_HUMAN (P28072) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y) Length = 239 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKK--LS 264 GS Y YG +D Y+ M+ EE + A+ A RDG+SGG + + + G ++ L Sbjct: 165 GSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLL 224 Query: 263 GDDV 252 GD + Sbjct: 225 GDQI 228
>PSMB_PYRFU (Q8U125) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 206 Score = 40.8 bits (94), Expect = 0.001 Identities = 23/65 (35%), Positives = 37/65 (56%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 G +AY ILD Y+ MSV + +LA +AI A RD +G + V + DG+K+ G Sbjct: 140 GMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTGDGLLVVTITKDGYKEYRGA 199 Query: 257 DVGEL 243 ++ ++ Sbjct: 200 ELEKM 204
>PSB9_MUSMB (O35522) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDG--WKKLS 264 GS Y YG +D YK M+ EE AI A RDG+SGG + + + G + + Sbjct: 150 GSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVIL 209 Query: 263 GDDVGELH 240 GD++ + + Sbjct: 210 GDELPKFY 217
>PSB9_MUSDU (O35521) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDG--WKKLS 264 GS Y YG +D YK M+ EE AI A RDG+SGG + + + G + + Sbjct: 150 GSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVIL 209 Query: 263 GDDVGELH 240 GD++ + + Sbjct: 210 GDELPKFY 217
>PSB9_MOUSE (P28076) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) (LMP-2d) Length = 219 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDG--WKKLS 264 GS Y YG +D YK M+ EE AI A RDG+SGG + + + G + + Sbjct: 150 GSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVIL 209 Query: 263 GDDVGELH 240 GD++ + + Sbjct: 210 GDELPKFY 217
>PSMB_METTH (O27270) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 210 Score = 40.0 bits (92), Expect = 0.003 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYV-GPDGWKKLSG 261 GS AYG+L++ Y + V+EA ++A RAI A RD SG + V V +G++ LS Sbjct: 140 GSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEEEGFRMLSE 199 Query: 260 DDV 252 +++ Sbjct: 200 EEI 202
>PSB9_MUSSI (O35524) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 39.7 bits (91), Expect = 0.003 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCV 306 GS Y YG +D YK M+ EE AI A RDG+SGG + Sbjct: 150 GSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVI 193
>PSB9_MUSPL (O35523) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 39.7 bits (91), Expect = 0.003 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCV 306 GS Y YG +D YK M+ EE AI A RDG+SGG + Sbjct: 150 GSSYIYGYVDAAYKPGMTSEECRRFTTNAITLAMNRDGSSGGVI 193
>PSB6_RAT (P28073) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y) (Proteasome chain 5) Length = 238 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKK--LS 264 GS Y YG +D Y+ M+ +E + A+ A RDG+SGG + + + G ++ L Sbjct: 164 GSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQQSGVERQVLL 223 Query: 263 GDDV 252 GD + Sbjct: 224 GDQI 227
>PSB6_MOUSE (Q60692) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y) Length = 238 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKK--LS 264 GS Y YG +D Y+ M+ +E + A+ A RDG+SGG + + + G ++ L Sbjct: 164 GSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQESGVERQVLL 223 Query: 263 GDDV 252 GD + Sbjct: 224 GDQI 227
>PSB9_HUMAN (P28065) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 39.3 bits (90), Expect = 0.004 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCV 306 GS + YG +D YK MS EE AI A RDG+SGG + Sbjct: 150 GSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVI 193
>PSB6_YEAST (P38624) Proteasome component PRE3 precursor (EC 3.4.25.1)| (Macropain subunit PRE3) (Proteinase YSCE subunit PRE3) (Multicatalytic endopeptidase complex subunit PRE3) Length = 215 Score = 39.3 bits (90), Expect = 0.004 Identities = 18/57 (31%), Positives = 32/57 (56%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKL 267 GS + YG D+ ++ NMS EE + + ++ A DG+SGG + + + G ++L Sbjct: 149 GSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 205
>PSMB_PYRAB (Q9V0N9) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 207 Score = 38.9 bits (89), Expect = 0.006 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLS 264 G +AY +LD Y+ ++ V E ++A AI A RD SG + V + +G+++LS Sbjct: 140 GMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTITEEGYRELS 197
>PSMA_METKA (Q8TYB7) Proteasome alpha subunit (EC 3.4.25.1) (Multicatalytic| endopeptidase complex alpha subunit) Length = 246 Score = 36.6 bits (83), Expect = 0.028 Identities = 20/65 (30%), Positives = 37/65 (56%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGD 258 G A + +E Y+ +M+++EA ELA RA+Y A+ R+ + + + V G++KL Sbjct: 170 GRQEALDVFEEEYREDMTLQEAIELAVRALYEAS-REETTADNLEIAVVDKQGFRKLERK 228 Query: 257 DVGEL 243 + E+ Sbjct: 229 KIEEM 233
>PSB9_SALSA (Q9DD33) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Low molecular mass protein 2) Length = 217 Score = 36.2 bits (82), Expect = 0.036 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDG 279 GS Y YG +D Y+ MS E+ + + A RDG+SGG + + G Sbjct: 148 GSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVTIDEKG 200
>PSB9_ONCMY (Q9PT26) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Low molecular mass protein 2) Length = 217 Score = 35.8 bits (81), Expect = 0.047 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDG 279 GS Y YG +D Y+ MS E+ + + A RDG+SGG + + G Sbjct: 148 GSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVTIDEKG 200
>PSB9_ORYLA (Q8UW64) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Low molecular mass protein 2) Length = 217 Score = 35.4 bits (80), Expect = 0.062 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGG 312 GS Y YG +D Y+ M+ EE + + A RDG+SGG Sbjct: 148 GSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSSGG 189
>AT8B3_HUMAN (O60423) Probable phospholipid-transporting ATPase IK (EC 3.6.3.1)| (ATPase class I type 8B member 3) Length = 1310 Score = 31.6 bits (70), Expect = 0.89 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = +2 Query: 170 RLTRKGPRPSLARREPPGPGSSGSAALRHHLRTASSIRQGQ 292 R TR GP PS A PPGPG +G + + + IR G+ Sbjct: 10 RSTRAGPEPSPA---PPGPGDTGDSDVTQEGSGPAGIRGGE 47
>PSB7_YEAST (P25043) Proteasome component PUP1 precursor (EC 3.4.25.1)| (Macropain subunit PUP1) (Proteinase YSCE subunit PUP1) (Multicatalytic endopeptidase complex subunit PUP1) Length = 261 Score = 31.2 bits (69), Expect = 1.2 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSV 300 GSL A +L+ +K +++ EEA +LA AI + D SG V V Sbjct: 159 GSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDV 204
>PSMA_PYRHO (O59219) Proteasome alpha subunit (EC 3.4.25.1) (Multicatalytic| endopeptidase complex alpha subunit) Length = 260 Score = 30.8 bits (68), Expect = 1.5 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = -1 Query: 425 AYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGDDV 252 A I +E YK +MS+EEA +LA A+ + A V++ V ++KLS +++ Sbjct: 173 AMAIFEEKYKDDMSLEEAIKLAIFALAKTMEKPSAENIEVAIITVKDKKFRKLSREEI 230
>DTD_THET8 (Q5SJQ9) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 152 Score = 30.0 bits (66), Expect = 2.6 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = +2 Query: 116 GGKQAPKSKFTGFRTT*IRLTRKGPRPSLARREPPGPGSS-GSAALRHHLRTASSIRQGQ 292 GG+ S+FT + T RKG RPS A+ PP G AAL L+ + G Sbjct: 70 GGEVLLVSQFTLYADT-----RKGNRPSFAKAAPPDQGKRLYEAALEAFLQQGVHVETGV 124 Query: 293 RSTH*R 310 H R Sbjct: 125 YGAHMR 130
>DTD_THET2 (Q72K35) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 152 Score = 30.0 bits (66), Expect = 2.6 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = +2 Query: 116 GGKQAPKSKFTGFRTT*IRLTRKGPRPSLARREPPGPGSS-GSAALRHHLRTASSIRQGQ 292 GG+ S+FT + T RKG RPS A+ PP G AAL L+ + G Sbjct: 70 GGEVLLVSQFTLYADT-----RKGNRPSFAKAAPPDQGKRLYEAALEAFLQQGVHVETGV 124 Query: 293 RSTH*R 310 H R Sbjct: 125 YGAHMR 130
>PY_DICLA (Q9PT98) Peptide Y precursor| Length = 97 Score = 29.6 bits (65), Expect = 3.4 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 11/57 (19%) Frame = +2 Query: 197 SLARREPPGPGSSGS-----------AALRHHLRTASSIRQGQRSTH*RSRHWLRHG 334 S A PP P S GS AA+RH++ + R G+RST ++ WL G Sbjct: 24 SFADAYPPKPESPGSNASPEDWAKYHAAVRHYVNLITRQRYGKRSTPEQAVAWLLFG 80
>PSB7_SCHPO (Q09841) Probable proteasome subunit beta type 7 precursor (EC| 3.4.25.1) Length = 267 Score = 29.6 bits (65), Expect = 3.4 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASG 315 GSL A +L+ Y+ ++ EA EL + AI F D SG Sbjct: 165 GSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSG 205
>PSMA_PYRAE (Q8ZVM1) Proteasome alpha subunit (EC 3.4.25.1) (Multicatalytic| endopeptidase complex alpha subunit) Length = 243 Score = 29.3 bits (64), Expect = 4.4 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = -1 Query: 413 LDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWKKLSGDDVGEL 243 L++ YKF+M + E ELA +A+ A ++ V+ + +K+S D+V L Sbjct: 177 LEKNYKFDMEMGECIELALKALASAVEITDSANVEVAYATIEEKKMRKMSQDEVASL 233
>ENGC_SYNEL (Q8DK79) Probable GTPase engC (EC 3.6.1.-)| Length = 348 Score = 29.3 bits (64), Expect = 4.4 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Frame = +2 Query: 149 GFRTT*IRLTR----KGPRPSLARREPP--GPGSSGSAALRHHLRTASSIRQGQRSTH-* 307 G+R + LT+ + RP LA + GP G ++L HL IR G S H Sbjct: 142 GYRCHVLSLTQGIAWQALRPHLANKITVVCGPSGVGKSSLIRHLTPREDIRVGAVSDHWH 201 Query: 308 RSRHWLRH 331 R RH RH Sbjct: 202 RGRHTTRH 209
>PSB2A_ARATH (O23714) Proteasome subunit beta type 2-A (EC 3.4.25.1) (Proteasome| subunit beta type 4) (20S proteasome beta subunit D-1) (Proteasome component GB) Length = 204 Score = 29.3 bits (64), Expect = 4.4 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAI 348 GS ++ +D Y+ +MSVEEA EL + I Sbjct: 134 GSYFSLSTMDRHYRSDMSVEEAIELVDKCI 163
>PSB2B_ARATH (O24633) Proteasome subunit beta type 2-B (EC 3.4.25.1) (Proteasome| subunit beta type 4) (20S proteasome beta subunit D-2) (Proteasome component GA) Length = 199 Score = 29.3 bits (64), Expect = 4.4 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAI 348 GS ++ +D Y+ +MSVEEA EL + I Sbjct: 134 GSYFSLSTMDRHYRSDMSVEEAIELVDKCI 163
>PSB7_RAT (Q9JHW0) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)| (Proteasome subunit Z) (Macropain chain Z) (Multicatalytic endopeptidase complex chain Z) Length = 277 Score = 29.3 bits (64), Expect = 4.4 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSV 300 GSL A + ++ ++ +M EEA +L AI F D SG + + Sbjct: 173 GSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDL 218
>PSB7_MOUSE (P70195) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)| (Proteasome subunit Z) (Macropain chain Z) (Multicatalytic endopeptidase complex chain Z) Length = 277 Score = 29.3 bits (64), Expect = 4.4 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSV 300 GSL A + ++ ++ +M EEA +L AI F D SG + + Sbjct: 173 GSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDL 218
>PDE3A_RAT (Q62865) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC| 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A) (CGI-PDE A) Length = 1141 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +2 Query: 92 RGEH*CRGGGKQAPKSKFTGFRTT*IRLTRKGPRPSLA 205 RG+H CRGG +P+ +R ++ R+ P+ S A Sbjct: 26 RGDHRCRGGSPSSPRGSGCCWRALALQPLRRSPQLSSA 63
>PSB7_HUMAN (Q99436) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)| (Proteasome subunit Z) (Macropain chain Z) (Multicatalytic endopeptidase complex chain Z) Length = 277 Score = 28.9 bits (63), Expect = 5.8 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSV 300 GSL A + ++ ++ +M EEA L AI F D SG + + Sbjct: 173 GSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDL 218
>5HT3R_CAVPO (O70212) 5-hydroxytryptamine 3 receptor precursor (5-HT-3)| (Serotonin-gated ion channel receptor) (5-HT3R) Length = 490 Score = 28.9 bits (63), Expect = 5.8 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +2 Query: 191 RPSLARREPPGPGSSGSAALRHHLRTASSIR---QGQRSTH*RSRHWLRHGTLHDK 349 + S R PP P S A+ L+ +SIR + + T +R WLR G++ DK Sbjct: 408 KTSRGRGSPPPPPREASLAMCGLLQELASIRHFLEKREETREVARDWLRVGSVLDK 463
>PSB2_ORYSA (Q9LST6) Proteasome subunit beta type 2 (EC 3.4.25.1) (20S| proteasome alpha subunit D) (20S proteasome subunit beta-4) Length = 212 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFR 330 GS + ++D+ Y+ +MSVEEA +L + I R Sbjct: 134 GSYFCLSLMDKLYRPDMSVEEAVDLVDKCIKEIRLR 169
>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/54 (31%), Positives = 22/54 (40%) Frame = +2 Query: 170 RLTRKGPRPSLARREPPGPGSSGSAALRHHLRTASSIRQGQRSTH*RSRHWLRH 331 R R GP P +E P G+ G RH + R+ + S RH RH Sbjct: 941 RAHRHGPDPG---KEGPASGTRGERRARHRTGPRACPREAESSEEPARRHRARH 991
>PSB7B_ARATH (Q7DLS1) Proteasome subunit beta type 7-B precursor (EC 3.4.25.1)| (Proteasome subunit beta type 2) (20S proteasome beta subunit B-2) (Proteasome component FC) Length = 274 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -1 Query: 437 GSLYAYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSV 300 GSL A + + YK ++ +E +L AI F D SG V + Sbjct: 169 GSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDI 214
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.5 bits (62), Expect = 7.6 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Frame = +2 Query: 125 QAPKSKFTGFRTT*IRLTRKGPRPSLARREPPGP---GSSGSAALRHHLRTASSI 280 QAP + I LT P+ R PPGP GS G+ HLR S+ Sbjct: 776 QAPLQAAAATTSVAIALTHHPRLPAAIFRPPPGPTTLGSLGAGQTPRHLRRLQSL 830
>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4| (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130) Length = 1085 Score = 28.1 bits (61), Expect = 9.9 Identities = 18/45 (40%), Positives = 21/45 (46%) Frame = +2 Query: 113 GGGKQAPKSKFTGFRTT*IRLTRKGPRPSLARREPPGPGSSGSAA 247 GGG Q P G + L GP P A+ PP GS+GS A Sbjct: 99 GGGPQRP-----GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCA 138
>PSB10_MOUSE (O35955) Proteasome subunit beta type 10 precursor (EC 3.4.25.1)| (Proteasome MECl-1) (Macropain subunit MECl-1) (Multicatalytic endopeptidase complex subunit MECl-1) Length = 273 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = -1 Query: 425 AYGILDEGYKFNMSVEEAAELARRAIYHATFRDGASGGCVSVYYVGPDGWK 273 A +L++ ++ NM++E A EL AI D SGG V + G K Sbjct: 173 AVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAK 223 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,805,683 Number of Sequences: 219361 Number of extensions: 1075120 Number of successful extensions: 3363 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 3239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3360 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
