ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast65b11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein Length = 1110 Score = 357 bits (180), Expect = 1e-95 Identities = 180/180 (100%) Strand = Plus / Minus Query: 147 cttgcgtccgcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagtt 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 892 cttgcgtccgcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagtt 833 Query: 207 gtaggagaggcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctc 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 832 gtaggagaggcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctc 773 Query: 267 gcggtgcatccaggcgtcgctgccggcggggcaggaggtcttgttggtggccttgtcgtg 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 772 gcggtgcatccaggcgtcgctgccggcggggcaggaggtcttgttggtggccttgtcgtg 713 Score = 238 bits (120), Expect = 9e-60 Identities = 123/124 (99%) Strand = Plus / Minus Query: 1 aaggaaagaagacatgtacatgtccaataatggaatcatgaaacgaacaagaagaagggc 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1038 aaggtaagaagacatgtacatgtccaataatggaatcatgaaacgaacaagaagaagggc 979 Query: 61 aattctgttctgcagcaccactactaatcaagaatcaaattaatcaaatcctggacagcc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 978 aattctgttctgcagcaccactactaatcaagaatcaaattaatcaaatcctggacagcc 919 Query: 121 acta 124 |||| Sbjct: 918 acta 915
>gb|AY589588.1| Triticum aestivum endotransglucosylase/hydrolase XTH4 mRNA, complete cds Length = 1100 Score = 232 bits (117), Expect = 6e-58 Identities = 162/177 (91%) Strand = Plus / Minus Query: 150 gcgtccgcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgta 209 |||||| |||||||||||||| ||||||||||| | ||| |||||||||||||||||||| Sbjct: 898 gcgtccacactcgccggggaatcccttggggaacctccagccgtcggcgcagtagttgta 839 Query: 210 ggagaggcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcg 269 |||||||||||||||||||||||| |||||||| ||||||| | ||| |||||||||| Sbjct: 838 ggagaggcagttgcgctcggcccaggcgacggtcttgagctcctcctcgccgagctcgcg 779 Query: 270 gtgcatccaggcgtcgctgccggcggggcaggaggtcttgttggtggccttgtcgtg 326 | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 778 gcgcatccaggcgtcgctgccggcggggcaggccgtcttgttggtggccttgtcgtg 722
>ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.17 mRNA Length = 1127 Score = 165 bits (83), Expect = 1e-37 Identities = 113/123 (91%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | Sbjct: 904 gcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggacat 845 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | ||||||||||||||||||||||||||| ||||||| || |||||||||||||||| || Sbjct: 844 gtagttgcgctcggcccacgcgacggtgccgagctcggcgccgtcgagctcgcggtggat 785 Query: 276 cca 278 ||| Sbjct: 784 cca 782
>ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1111 Score = 165 bits (83), Expect = 1e-37 Identities = 113/123 (91%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | Sbjct: 909 gcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggacat 850 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | ||||||||||||||||||||||||||| ||||||| || |||||||||||||||| || Sbjct: 849 gtagttgcgctcggcccacgcgacggtgccgagctcggcgccgtcgagctcgcggtggat 790 Query: 276 cca 278 ||| Sbjct: 789 cca 787
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 165 bits (83), Expect = 1e-37 Identities = 113/123 (91%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | Sbjct: 8322675 gcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggacat 8322616 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | ||||||||||||||||||||||||||| ||||||| || |||||||||||||||| || Sbjct: 8322615 gtagttgcgctcggcccacgcgacggtgccgagctcggcgccgtcgagctcgcggtggat 8322556 Query: 276 cca 278 ||| Sbjct: 8322555 cca 8322553
>dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXRT5 mRNA for xyloglucan endotransglycosylase-related protein 5, complete cds Length = 1280 Score = 165 bits (83), Expect = 1e-37 Identities = 113/123 (91%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | Sbjct: 900 gcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggacat 841 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | ||||||||||||||||||||||||||| ||||||| || |||||||||||||||| || Sbjct: 840 gtagttgcgctcggcccacgcgacggtgccgagctcggcgccgtcgagctcgcggtggat 781 Query: 276 cca 278 ||| Sbjct: 780 cca 778
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0682A06 Length = 142023 Score = 165 bits (83), Expect = 1e-37 Identities = 113/123 (91%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | Sbjct: 62784 gcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggacat 62725 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | ||||||||||||||||||||||||||| ||||||| || |||||||||||||||| || Sbjct: 62724 gtagttgcgctcggcccacgcgacggtgccgagctcggcgccgtcgagctcgcggtggat 62665 Query: 276 cca 278 ||| Sbjct: 62664 cca 62662
>dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F05, full insert sequence Length = 1111 Score = 165 bits (83), Expect = 1e-37 Identities = 113/123 (91%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | Sbjct: 909 gcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggacat 850 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | ||||||||||||||||||||||||||| ||||||| || |||||||||||||||| || Sbjct: 849 gtagttgcgctcggcccacgcgacggtgccgagctcggcgccgtcgagctcgcggtggat 790 Query: 276 cca 278 ||| Sbjct: 789 cca 787
>dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H12, full insert sequence Length = 1127 Score = 165 bits (83), Expect = 1e-37 Identities = 113/123 (91%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | Sbjct: 904 gcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggacat 845 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | ||||||||||||||||||||||||||| ||||||| || |||||||||||||||| || Sbjct: 844 gtagttgcgctcggcccacgcgacggtgccgagctcggcgccgtcgagctcgcggtggat 785 Query: 276 cca 278 ||| Sbjct: 784 cca 782
>emb|AJ295944.1|FPR295944 Festuca pratensis mRNA for Xet2 protein Length = 1189 Score = 147 bits (74), Expect = 3e-32 Identities = 134/154 (87%) Strand = Plus / Minus Query: 147 cttgcgtccgcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagtt 206 |||||| || ||||| |||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct: 903 cttgcggccacactccccggggaatcccttggggaaccgccagccgtcggcgcagtagtt 844 Query: 207 gtaggagaggcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctc 266 |||||| |||||||||||||| | ||| ||||||||| |||||| ||||| ||||||| Sbjct: 843 gtaggacaggcagttgcgctccgtccaggcgacggtgtcgagctcctcgtcgccgagctc 784 Query: 267 gcggtgcatccaggcgtcgctgccggcggggcag 300 | |||||||||||||||| |||| |||||||| Sbjct: 783 cctgtgcatccaggcgtcggagccgtcggggcag 750
>gb|AY589586.1| Triticum aestivum endotransglucosylase/hydrolase XTH2 mRNA, complete cds Length = 1107 Score = 107 bits (54), Expect = 2e-20 Identities = 123/146 (84%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| |||||||||| |||||||||||||| ||||||| |||||||| |||||| | Sbjct: 890 gcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtaggacat 831 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | | |||| ||||||||| |||||||||| ||| | | |||||||||| || ||| Sbjct: 830 gtacttgctctcggcccaggcgacggtgccgagggccttgccgtcgagctccgtgttcat 771 Query: 276 ccaggcgtcgctgccggcggggcagg 301 ||| |||||||||||||||||||||| Sbjct: 770 ccacgcgtcgctgccggcggggcagg 745
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (PM5) Length = 1188 Score = 103 bits (52), Expect = 3e-19 Identities = 121/144 (84%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| |||||||||| |||||||||||||| ||||||| |||||||| |||||| | Sbjct: 901 gcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtaggacat 842 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | | |||| ||||||||| |||||||||| ||| | | |||||||||| | ||| Sbjct: 841 gtacttgctctcggcccaggcgacggtgccgagggctttggcgtcgagctccgtgctcat 782 Query: 276 ccaggcgtcgctgccggcggggca 299 |||||||||||||||||||||||| Sbjct: 781 ccaggcgtcgctgccggcggggca 758
>gb|AY589585.1| Triticum aestivum endotransglucosylase/hydrolase XTH1 mRNA, complete cds Length = 958 Score = 103 bits (52), Expect = 3e-19 Identities = 121/144 (84%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| |||||||||| |||||||||||||| ||||||| |||||||| |||||| | Sbjct: 890 gcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtaggacat 831 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | | |||| ||||||||| |||||||||| ||| | | |||||||||| || ||| Sbjct: 830 gtacttgctctcggcccaggcgacggtgccgagggccttgccgtcgagctctgtgttcat 771 Query: 276 ccaggcgtcgctgccggcggggca 299 ||| |||||||||||||||||||| Sbjct: 770 ccacgcgtcgctgccggcggggca 747
>gb|AY589587.1| Triticum aestivum endotransglucosylase/hydrolase XTH3 mRNA, complete cds Length = 938 Score = 87.7 bits (44), Expect = 2e-14 Identities = 119/144 (82%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| ||||||| || |||||||||||||| ||||||| |||||||| |||||| | Sbjct: 889 gcactcggcggggaatccgttggggaagcgccagccgtcggtgcagtagtcgtaggacat 830 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | | |||| ||||||||| |||||||||| ||| | | || ||||||| || ||| Sbjct: 829 gtacttgctctcggcccaggcgacggtgccgagggccttgccgccgagctccgtgttcat 770 Query: 276 ccaggcgtcgctgccggcggggca 299 ||| |||||||||||||||||||| Sbjct: 769 ccacgcgtcgctgccggcggggca 746
>gb|AY106262.1| Zea mays PCO111648 mRNA sequence Length = 1257 Score = 79.8 bits (40), Expect = 5e-12 Identities = 121/148 (81%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| |||||||||||| ||||||||||| |||||| |||||||||||||| | Sbjct: 978 gcactcggcggggaagccctgcgggaagcgccagccgtcgtcgcagtagttgtagtgcat 919 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | |||| || |||||| |||||||||| |||| || ||||||||| |||| ||| Sbjct: 918 gtagttctgcctggcccaggcgacggtgccccactcggcggcgtcgagctggcggctcat 859 Query: 276 ccaggcgtcgctgccggcggggcaggag 303 |||| |||| ||||||||||||||||| Sbjct: 858 ccagcggtcggtgccggcggggcaggag 831
>gb|BT017380.1| Zea mays clone EL01N0326D06.c mRNA sequence Length = 781 Score = 71.9 bits (36), Expect = 1e-09 Identities = 120/148 (81%) Strand = Plus / Minus Query: 156 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagag 215 ||||||| |||||||||||| ||||| ||||| |||||| |||||||||||||| | Sbjct: 500 gcactcggcggggaagccctgcgggaatcgccagccgtcgtcgcagtagttgtagtgcat 441 Query: 216 gcagttgcgctcggcccacgcgacggtgctgagctcgccgtcgtcgagctcgcggtgcat 275 | |||| || |||||| |||||||||| |||| || ||||||||| |||| ||| Sbjct: 440 gtagttctgcctggcccaggcgacggtgccccactcggcggcgtcgagctggcggctcat 381 Query: 276 ccaggcgtcgctgccggcggggcaggag 303 |||| |||| ||||||||||||||||| Sbjct: 380 ccagcggtcggtgccggcggggcaggag 353
>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23, complete sequence Length = 149353 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 196 gcgcagtagttgtaggagaggcagttgcgctcggcccacgcgacggtgctgagctcgccg 255 ||||||||||||||||| | | |||||||||||| | | ||||| |||| ||||| | || Sbjct: 108867 gcgcagtagttgtaggacatgtagttgcgctcgggctaggcgacagtgccgagcttggcg 108808 Query: 256 tcgtcgagctc 266 ||||||||||| Sbjct: 108807 tcgtcgagctc 108797
>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02, complete sequence Length = 153623 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 196 gcgcagtagttgtaggagaggcagttgcgctcggcccacgcgacggtgctgagctcgccg 255 ||||||||||||||||| | | |||||||||||| | | ||||| |||| ||||| | || Sbjct: 28250 gcgcagtagttgtaggacatgtagttgcgctcgggctaggcgacagtgccgagcttggcg 28191 Query: 256 tcgtcgagctc 266 ||||||||||| Sbjct: 28190 tcgtcgagctc 28180
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 196 gcgcagtagttgtaggagaggcagttgcgctcggcccacgcgacggtgctgagctcgccg 255 ||||||||||||||||| | | |||||||||||| | | ||||| |||| ||||| | || Sbjct: 108985 gcgcagtagttgtaggacatgtagttgcgctcgggctaggcgacagtgccgagcttggcg 108926 Query: 256 tcgtcgagctc 266 ||||||||||| Sbjct: 108925 tcgtcgagctc 108915
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 196 gcgcagtagttgtaggagaggcagttgcgctcggcccacgcgacggtgctgagctcgccg 255 ||||||||||||||||| | | |||||||||||| | | ||||| |||| ||||| | || Sbjct: 33677807 gcgcagtagttgtaggacatgtagttgcgctcgggctaggcgacagtgccgagcttggcg 33677748 Query: 256 tcgtcgagctc 266 ||||||||||| Sbjct: 33677747 tcgtcgagctc 33677737
>gb|BT017812.1| Zea mays clone EL01N0507B07.c mRNA sequence Length = 1156 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 155 cgcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgta 209 ||||||| |||||||| |||| ||||||||||| ||||| ||||||||||||| Sbjct: 802 cgcactctccggggaacccctgcgggaagcgccacccgtcatcgcagtagttgta 748
>emb|AJ875021.1| Zea mays mRNA for xyloglucan endo-transglycosylase/hydrolase (xth1 gene), cultivated variety W64A Length = 1225 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 166 gggaagcccttggggaagcgccatccgtcggcgcagtagttgtaggagaggcagttgcgc 225 |||| ||||| |||||| ||||| |||||| |||||||||||||| | | |||||| | Sbjct: 917 gggaggccctgggggaaccgccagccgtcgtcgcagtagttgtagcgcatgtagttgctc 858 Query: 226 tcggcccacgcgacggtgc 244 ||||||||| |||||||| Sbjct: 857 tcggcccaccggacggtgc 839
>gb|AY105107.1| Zea mays PCO140468 mRNA sequence Length = 1297 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 155 cgcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgta 209 ||||||| |||||||| |||| ||||||||||| ||||| ||||||||||||| Sbjct: 966 cgcactctccggggaacccctgcgggaagcgccacccgtcatcgcagtagttgta 912
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 251 cgccgtcgtcgagctcgcggtg 272 |||||||||||||||||||||| Sbjct: 2315359 cgccgtcgtcgagctcgcggtg 2315338
>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13 Length = 346186 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 251 cgccgtcgtcgagctcgcggtg 272 |||||||||||||||||||||| Sbjct: 234323 cgccgtcgtcgagctcgcggtg 234302
>emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 8/14 Length = 306050 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 251 cgccgtcgtcgagctcgcggtg 272 |||||||||||||||||||||| Sbjct: 91939 cgccgtcgtcgagctcgcggtg 91918
>dbj|AP001204.1| Rhodococcus equi plasmid pREAT701 DNA, complete sequence Length = 80610 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 cggcccacgcgacggtgctgag 248 |||||||||||||||||||||| Sbjct: 72543 cggcccacgcgacggtgctgag 72522
>gb|AF116907.2|AF116907 Rhodococcus equi virulence plasmid, complete sequence Length = 80609 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 cggcccacgcgacggtgctgag 248 |||||||||||||||||||||| Sbjct: 72542 cggcccacgcgacggtgctgag 72521
>ref|NM_127015.3| Arabidopsis thaliana unknown protein AT2G14520 mRNA, complete cds Length = 1441 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 atcaagaatcaaattaatcaaatcc 111 ||||||||||||||| ||||||||| Sbjct: 705 atcaagaatcaaattcatcaaatcc 681
>gb|AY080819.1| Arabidopsis thaliana At2g14520 mRNA sequence Length = 1145 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 atcaagaatcaaattaatcaaatcc 111 ||||||||||||||| ||||||||| Sbjct: 394 atcaagaatcaaattcatcaaatcc 370
>gb|AC006067.4| Arabidopsis thaliana chromosome 2 clone T13P21 map mi398, complete sequence Length = 126337 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 atcaagaatcaaattaatcaaatcc 111 ||||||||||||||| ||||||||| Sbjct: 55201 atcaagaatcaaattcatcaaatcc 55177
>gb|DQ069814.1| Arabidopsis thaliana At2g14520 mRNA, partial sequence Length = 742 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 atcaagaatcaaattaatcaaatcc 111 ||||||||||||||| ||||||||| Sbjct: 319 atcaagaatcaaattcatcaaatcc 295
>gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome Length = 791654 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 80 actactaatcaagaatcaaat 100 ||||||||||||||||||||| Sbjct: 103052 actactaatcaagaatcaaat 103032
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 tccaggcgtcgctgccggcgg 295 ||||||||||||||||||||| Sbjct: 5450085 tccaggcgtcgctgccggcgg 5450065
>gb|AC116671.14| Mus musculus chromosome 3, clone RP23-111L16, complete sequence Length = 207768 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 ctgttctgcagcaccactactaat 88 ||||||||||||| |||||||||| Sbjct: 112238 ctgttctgcagcaacactactaat 112215
>ref|NM_185720.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1464 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gagctcgccgtcgtcgagct 265 |||||||||||||||||||| Sbjct: 943 gagctcgccgtcgtcgagct 962
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 cgccgtcgtcgagctcgcggtgca 274 |||||||| ||||||||||||||| Sbjct: 2565212 cgccgtcggcgagctcgcggtgca 2565189
>gb|AY207496.1| Chlamydomonas reinhardtii CR051 protein gene, complete cds Length = 6868 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 tccaggcgtcgctgccggcg 294 |||||||||||||||||||| Sbjct: 2483 tccaggcgtcgctgccggcg 2502
>gb|AC135638.5| Mus musculus BAC clone RP23-330K10 from chromosome 18, complete sequence Length = 184588 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 taatggaatcatgaaacgaacaag 51 |||||||||||||||| ||||||| Sbjct: 150584 taatggaatcatgaaaggaacaag 150607
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 caggcgtcgctgccggcggg 296 |||||||||||||||||||| Sbjct: 178918 caggcgtcgctgccggcggg 178937
>gb|AC132320.4| Mus musculus BAC clone RP24-259L9 from chromosome 18, complete sequence Length = 156239 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ataatggaatcatgaaacgaacaa 50 ||||||||||||||||| |||||| Sbjct: 96217 ataatggaatcatgaaaggaacaa 96240
>gb|AC134099.2| Homo sapiens 3 BAC RP11-221B6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153726 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 aatcaagaatcaaattaatcaaat 109 ||||||||||||||||||| |||| Sbjct: 40721 aatcaagaatcaaattaataaaat 40744
>ref|XM_946673.1| Theileria annulata strain Ankara hypothetical protein (TA16015) partial mRNA Length = 4551 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 aatcaagaatcaaattaatcaaat 109 ||||||||| |||||||||||||| Sbjct: 2850 aatcaagaaacaaattaatcaaat 2873
>gb|AC102225.9| Mus musculus chromosome 18, clone RP24-406O24, complete sequence Length = 208106 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ataatggaatcatgaaacgaacaa 50 ||||||||||||||||| |||||| Sbjct: 4577 ataatggaatcatgaaaggaacaa 4600
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 cgccgtcgtcgagctcgcggtgca 274 |||||||| ||||||||||||||| Sbjct: 1817012 cgccgtcggcgagctcgcggtgca 1817035
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 tccaggcgtcgctgccggcg 294 |||||||||||||||||||| Sbjct: 99269 tccaggcgtcgctgccggcg 99250
>gb|AC161171.5| Mus musculus chromosome 3, clone RP24-326F21, complete sequence Length = 153637 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 ctgttctgcagcaccactactaat 88 ||||||||||||| |||||||||| Sbjct: 139764 ctgttctgcagcaacactactaat 139787
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gagctcgccgtcgtcgagct 265 |||||||||||||||||||| Sbjct: 21648983 gagctcgccgtcgtcgagct 21649002
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 gagctcgccgtcgtcgagctcgcg 269 |||||| ||||||||||||||||| Sbjct: 1255237 gagctctccgtcgtcgagctcgcg 1255214
>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1612_A04 Length = 124833 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gagctcgccgtcgtcgagct 265 |||||||||||||||||||| Sbjct: 79439 gagctcgccgtcgtcgagct 79458
>gb|AY103891.1| Zea mays PCO065722 mRNA sequence Length = 1280 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 cgtcggcgcagtagttgtag 210 |||||||||||||||||||| Sbjct: 960 cgtcggcgcagtagttgtag 941
>gb|AC151990.6| Mus musculus BAC clone RP23-299K14 from chromosome 18, complete sequence Length = 205253 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 taatggaatcatgaaacgaacaag 51 |||||||||||||||| ||||||| Sbjct: 167251 taatggaatcatgaaaggaacaag 167228 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 ataatggaatcatgaaacgaacaa 50 ||||||||||||||||| |||||| Sbjct: 13369 ataatggaatcatgaaaggaacaa 13346
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 tcgccgtcgtcgagctcgcg 269 |||||||||||||||||||| Sbjct: 899350 tcgccgtcgtcgagctcgcg 899331 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,696,716 Number of Sequences: 3902068 Number of extensions: 2696716 Number of successful extensions: 52234 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51664 Number of HSP's gapped (non-prelim): 570 length of query: 326 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 304 effective length of database: 17,147,199,772 effective search space: 5212748730688 effective search space used: 5212748730688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
