ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast65b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PGSB2_DROME (Q9VV96) Peptidoglycan-recognition protein-SB2 precu... 30 2.1
2PGSB2_DROSI (Q70PW6) Peptidoglycan-recognition protein-SB2 precu... 28 6.2

>PGSB2_DROME (Q9VV96) Peptidoglycan-recognition protein-SB2 precursor (EC|
           3.5.1.28)
          Length = 182

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 135 SSWCKRPLIPRMPPLQRPCR 76
           SSWC  P+ PRMP L  P R
Sbjct: 23  SSWCPVPISPRMPRLMVPVR 42



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>PGSB2_DROSI (Q70PW6) Peptidoglycan-recognition protein-SB2 precursor (EC|
           3.5.1.28)
          Length = 182

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 135 SSWCKRPLIPRMPPLQRPCR 76
           SSWC  P+ PR+P L  P R
Sbjct: 23  SSWCPVPISPRIPRLMVPVR 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,230,480
Number of Sequences: 219361
Number of extensions: 540459
Number of successful extensions: 1610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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