ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast64h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
2dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
3dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
4dbj|AK106535.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
5dbj|AK102119.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
6ref|NM_186621.2| Oryza sativa (japonica cultivar-group), mRNA 88 3e-14
7dbj|AK065761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
8dbj|AK065461.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
9dbj|AK062040.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
10gb|AY104837.1| Zea mays PCO126859 mRNA sequence 86 1e-13
11dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
12ref|XM_478283.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.092
13dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.092
14ref|XM_420799.1| PREDICTED: Gallus gallus similar to FLJ46481 pr... 42 1.4
15gb|AC023248.20| Mus musculus chromosome 7, clone RP23-124B2, com... 42 1.4
16emb|CT963096.1| M.spretus DNA sequence from clone XX-CH35_391C2 ... 42 1.4
17emb|AJ224091.1|PAAJ4091 Papilio anactus mitochondrion, NADH-dehy... 42 1.4
18emb|AJ271885.2|MMU271885 Mus musculus partial Kcnq1 gene for pot... 42 1.4
19dbj|AP001293.1| Mus musculus genomic DNA, chromosome 7, clone:B1... 42 1.4
20dbj|AP001917.2| Mus musculus genomic DNA , chromosome 7, clone:B... 42 1.4
21gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 40 5.7
22gb|AC102756.8| Mus musculus chromosome 3, clone RP24-167K1, comp... 40 5.7
23ref|XM_428050.1| PREDICTED: Gallus gallus similar to Sphingosine... 40 5.7
24emb|AL772177.2| Human DNA sequence from clone RP11-353A5 on chro... 40 5.7
25emb|AL162595.17| Human DNA sequence from clone RP5-1061H20 on ch... 40 5.7
26emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 5.7
27gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, comp... 40 5.7
28emb|BX927397.10| Zebrafish DNA sequence from clone DKEY-87H7 in ... 40 5.7
29gb|DQ271194.1| Mustela vison clone III2F22 microsatellite sequence 40 5.7
30gb|AC010139.4|AC010139 Homo sapiens BAC clone RP11-194G10 from 3... 40 5.7
31dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
32gb|AC091493.2| Homo sapiens chromosome 3 clone RP11-357E4 map 3p... 40 5.7
33dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
34dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
35gb|DQ299485.1| Hibiscus tiliaceus clone 3_08 glyceraldehyde-3-ph... 40 5.7
36gb|DQ299484.1| Hibiscus tiliaceus clone 3_03 glyceraldehyde-3-ph... 40 5.7
37gb|DQ299473.1| Hibiscus tiliaceus clone 3_06 glyceraldehyde-3-ph... 40 5.7
38gb|DQ299472.1| Hibiscus tiliaceus clone 3_03 glyceraldehyde-3-ph... 40 5.7
39gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge... 40 5.7 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 94/109 (86%)
 Strand = Plus / Minus

                                                                           
Query: 316     ttggtcgtcatgatgagagttcccgtcactgaatcaatcttggcatctagcttggaactc 375
               |||||||||||||| |||||||| | ||||||||||||||||||||| ||||| ||| | 
Sbjct: 3631129 ttggtcgtcatgataagagttccagacactgaatcaatcttggcatcgagctttgaattt 3631070

                                                                
Query: 376     ttgaccatgttcattatccacaactcagcttcatcataggtcatgttca 424
                | || | ||||||||||||||||||  |||||||||||  ||||||||
Sbjct: 3631069 ctaactaagttcattatccacaactccccttcatcatagcgcatgttca 3631021



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 92/109 (84%)
 Strand = Plus / Plus

                                                                           
Query: 316     ttggtcgtcatgatgagagttcccgtcactgaatcaatcttggcatctagcttggaactc 375
               |||||||||||||| |||||||| | |||||||||||||||||| || ||||| ||| ||
Sbjct: 6796276 ttggtcgtcatgataagagttccagacactgaatcaatcttggcgtcgagctttgaattc 6796335

                                                                
Query: 376     ttgaccatgttcattatccacaactcagcttcatcataggtcatgttca 424
                | || | |||||| |||||||| || || ||||| ||| |||||||||
Sbjct: 6796336 ctaactaagttcataatccacaattctgcctcatcgtagctcatgttca 6796384



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                            
Query: 316      ttggtcgtcatgatgagagttcccgtcactgaatcaatcttggcatctagcttggaactc 375
                |||| ||||||||| |||||||| | | ||| |||||||||||| || ||||| ||| | 
Sbjct: 19002148 ttggccgtcatgataagagttccagacgctgtatcaatcttggcgtcgagctttgaattg 19002089

                                       
Query: 376      ttgaccatgttcattatccacaa 398
                 |||| | |||||| ||||||||
Sbjct: 19002088 ctgactaagttcatgatccacaa 19002066
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>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1641_C04
          Length = 134367

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 94/109 (86%)
 Strand = Plus / Minus

                                                                          
Query: 316    ttggtcgtcatgatgagagttcccgtcactgaatcaatcttggcatctagcttggaactc 375
              |||||||||||||| |||||||| | ||||||||||||||||||||| ||||| ||| | 
Sbjct: 100446 ttggtcgtcatgataagagttccagacactgaatcaatcttggcatcgagctttgaattt 100387

                                                               
Query: 376    ttgaccatgttcattatccacaactcagcttcatcataggtcatgttca 424
               | || | ||||||||||||||||||  |||||||||||  ||||||||
Sbjct: 100386 ctaactaagttcattatccacaactccccttcatcatagcgcatgttca 100338
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>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0039H02
          Length = 169162

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 94/109 (86%)
 Strand = Plus / Minus

                                                                          
Query: 316    ttggtcgtcatgatgagagttcccgtcactgaatcaatcttggcatctagcttggaactc 375
              |||||||||||||| |||||||| | ||||||||||||||||||||| ||||| ||| | 
Sbjct: 169079 ttggtcgtcatgataagagttccagacactgaatcaatcttggcatcgagctttgaattt 169020

                                                               
Query: 376    ttgaccatgttcattatccacaactcagcttcatcataggtcatgttca 424
               | || | ||||||||||||||||||  |||||||||||  ||||||||
Sbjct: 169019 ctaactaagttcattatccacaactccccttcatcatagcgcatgttca 168971
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>dbj|AK106535.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B06, full
            insert sequence
          Length = 1771

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 94/109 (86%)
 Strand = Plus / Minus

                                                                        
Query: 316  ttggtcgtcatgatgagagttcccgtcactgaatcaatcttggcatctagcttggaactc 375
            |||||||||||||| |||||||| | ||||||||||||||||||||| ||||| ||| | 
Sbjct: 1175 ttggtcgtcatgataagagttccagacactgaatcaatcttggcatcgagctttgaattt 1116

                                                             
Query: 376  ttgaccatgttcattatccacaactcagcttcatcataggtcatgttca 424
             | || | ||||||||||||||||||  |||||||||||  ||||||||
Sbjct: 1115 ctaactaagttcattatccacaactccccttcatcatagcgcatgttca 1067
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>dbj|AK102119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084M22, full
            insert sequence
          Length = 1828

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 94/109 (86%)
 Strand = Plus / Minus

                                                                        
Query: 316  ttggtcgtcatgatgagagttcccgtcactgaatcaatcttggcatctagcttggaactc 375
            |||||||||||||| |||||||| | ||||||||||||||||||||| ||||| ||| | 
Sbjct: 1263 ttggtcgtcatgataagagttccagacactgaatcaatcttggcatcgagctttgaattt 1204

                                                             
Query: 376  ttgaccatgttcattatccacaactcagcttcatcataggtcatgttca 424
             | || | ||||||||||||||||||  |||||||||||  ||||||||
Sbjct: 1203 ctaactaagttcattatccacaactccccttcatcatagcgcatgttca 1155
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>ref|NM_186621.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1763

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 113/136 (83%)
 Strand = Plus / Minus

                                                                        
Query: 289  ataatctgctcatggacatcaacacggttggtcgtcatgatgagagttcccgtcactgaa 348
            |||| |||||||||||  | |||| | |||||||||||||| |||||||| | |||||||
Sbjct: 1303 ataacctgctcatggatgttaacatgattggtcgtcatgataagagttccagacactgaa 1244

                                                                        
Query: 349  tcaatcttggcatctagcttggaactcttgaccatgttcattatccacaactcagcttca 408
            ||||||||||| || ||||| ||| || | || | |||||| |||||||| || || |||
Sbjct: 1243 tcaatcttggcgtcgagctttgaattcctaactaagttcataatccacaattctgcctca 1184

                            
Query: 409  tcataggtcatgttca 424
            || ||| |||||||||
Sbjct: 1183 tcgtagctcatgttca 1168
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>dbj|AK065761.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040O19, full
            insert sequence
          Length = 2757

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 113/136 (83%)
 Strand = Plus / Minus

                                                                        
Query: 289  ataatctgctcatggacatcaacacggttggtcgtcatgatgagagttcccgtcactgaa 348
            |||| |||||||||||  | |||| | |||||||||||||| |||||||| | |||||||
Sbjct: 2449 ataacctgctcatggatgttaacatgattggtcgtcatgataagagttccagacactgaa 2390

                                                                        
Query: 349  tcaatcttggcatctagcttggaactcttgaccatgttcattatccacaactcagcttca 408
            ||||||||||| || ||||| ||| || | || | |||||| |||||||| || || |||
Sbjct: 2389 tcaatcttggcgtcgagctttgaattcctaactaagttcataatccacaattctgcctca 2330

                            
Query: 409  tcataggtcatgttca 424
            || ||| |||||||||
Sbjct: 2329 tcgtagctcatgttca 2314
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>dbj|AK065461.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021F09, full
            insert sequence
          Length = 1762

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 113/136 (83%)
 Strand = Plus / Minus

                                                                        
Query: 289  ataatctgctcatggacatcaacacggttggtcgtcatgatgagagttcccgtcactgaa 348
            |||| |||||||||||  | |||| | |||||||||||||| |||||||| | |||||||
Sbjct: 1302 ataacctgctcatggatgttaacatgattggtcgtcatgataagagttccagacactgaa 1243

                                                                        
Query: 349  tcaatcttggcatctagcttggaactcttgaccatgttcattatccacaactcagcttca 408
            ||||||||||| || ||||| ||| || | || | |||||| |||||||| || || |||
Sbjct: 1242 tcaatcttggcgtcgagctttgaattcctaactaagttcataatccacaattctgcctca 1183

                            
Query: 409  tcataggtcatgttca 424
            || ||| |||||||||
Sbjct: 1182 tcgtagctcatgttca 1167
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>dbj|AK062040.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A02, full
           insert sequence
          Length = 744

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 113/136 (83%)
 Strand = Plus / Minus

                                                                       
Query: 289 ataatctgctcatggacatcaacacggttggtcgtcatgatgagagttcccgtcactgaa 348
           |||| |||||||||||  | |||| | |||||||||||||| |||||||| | |||||||
Sbjct: 412 ataacctgctcatggatgttaacatgattggtcgtcatgataagagttccagacactgaa 353

                                                                       
Query: 349 tcaatcttggcatctagcttggaactcttgaccatgttcattatccacaactcagcttca 408
           ||||||||||| || ||||| ||| || | || | |||||| |||||||| || || |||
Sbjct: 352 tcaatcttggcgtcgagctttgaattcctaactaagttcataatccacaattctgcctca 293

                           
Query: 409 tcataggtcatgttca 424
           || ||| |||||||||
Sbjct: 292 tcgtagctcatgttca 277
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>gb|AY104837.1| Zea mays PCO126859 mRNA sequence
          Length = 787

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 148/183 (80%)
 Strand = Plus / Minus

                                                                       
Query: 242 tctttgctagcatgtaggtcctggcgttgaggttcttcctgctctcaataatctgctcat 301
           ||||||| |||||||||||||    ||| |||  |||| ||||||| |||||||||||||
Sbjct: 586 tctttgcgagcatgtaggtccgcatgttaaggcccttcatgctctcgataatctgctcat 527

                                                                       
Query: 302 ggacatcaacacggttggtcgtcatgatgagagttcccgtcactgaatcaatcttggcat 361
           | ||||  |   | ||||| |||||||| |||||||| | ||||||||| ||| | ||||
Sbjct: 526 gcacattgatgtgattggttgtcatgataagagttcctgacactgaatcgatccttgcat 467

                                                                       
Query: 362 ctagcttggaactcttgaccatgttcattatccacaactcagcttcatcataggtcatgt 421
           | || || || ||| | |||| |||||||||||||||||| || ||||| ||| ||||||
Sbjct: 466 ccagttttgagctcctaaccaagttcattatccacaactcggcctcatcgtagctcatgt 407

              
Query: 422 tca 424
           |||
Sbjct: 406 tca 404
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>dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0592C06
          Length = 160071

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 92/109 (84%)
 Strand = Plus / Plus

                                                                         
Query: 316   ttggtcgtcatgatgagagttcccgtcactgaatcaatcttggcatctagcttggaactc 375
             |||||||||||||| |||||||| | |||||||||||||||||| || ||||| ||| ||
Sbjct: 90410 ttggtcgtcatgataagagttccagacactgaatcaatcttggcgtcgagctttgaattc 90469

                                                              
Query: 376   ttgaccatgttcattatccacaactcagcttcatcataggtcatgttca 424
              | || | |||||| |||||||| || || ||||| ||| |||||||||
Sbjct: 90470 ctaactaagttcataatccacaattctgcctcatcgtagctcatgttca 90518
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>ref|XM_478283.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1311

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                        
Query: 316  ttggtcgtcatgatgagagttcccgtcactgaatcaatcttggcatctagcttggaactc 375
            |||| ||||||||| |||||||| | | ||| |||||||||||| || ||||| ||| | 
Sbjct: 1217 ttggccgtcatgataagagttccagacgctgtatcaatcttggcgtcgagctttgaattg 1158

                                   
Query: 376  ttgaccatgttcattatccacaa 398
             |||| | |||||| ||||||||
Sbjct: 1157 ctgactaagttcatgatccacaa 1135
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>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0430F03
          Length = 183095

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                          
Query: 316    ttggtcgtcatgatgagagttcccgtcactgaatcaatcttggcatctagcttggaactc 375
              |||| ||||||||| |||||||| | | ||| |||||||||||| || ||||| ||| | 
Sbjct: 104133 ttggccgtcatgataagagttccagacgctgtatcaatcttggcgtcgagctttgaattg 104074

                                     
Query: 376    ttgaccatgttcattatccacaa 398
               |||| | |||||| ||||||||
Sbjct: 104073 ctgactaagttcatgatccacaa 104051
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>ref|XM_420799.1| PREDICTED: Gallus gallus similar to FLJ46481 protein (LOC422853),
            mRNA
          Length = 4911

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  tgtgctgctgcatgccctgga 231
            |||||||||||||||||||||
Sbjct: 1182 tgtgctgctgcatgccctgga 1202
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>gb|AC023248.20| Mus musculus chromosome 7, clone RP23-124B2, complete sequence
          Length = 211123

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   tcatggacatcaacacggttg 318
             |||||||||||||||||||||
Sbjct: 95089 tcatggacatcaacacggttg 95109
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>emb|CT963096.1| M.spretus DNA sequence from clone XX-CH35_391C2 on chromosome 7,
            complete sequence
          Length = 164625

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 298  tcatggacatcaacacggttg 318
            |||||||||||||||||||||
Sbjct: 7839 tcatggacatcaacacggttg 7819
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>emb|AJ224091.1|PAAJ4091 Papilio anactus mitochondrion, NADH-dehydrogenase subunit 1 (ND1)
          gene,
          Length = 462

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 73 tttaaaacatcagcataaggctgta 97
          ||||||||||||||| |||||||||
Sbjct: 60 tttaaaacatcagcaaaaggctgta 36
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>emb|AJ271885.2|MMU271885 Mus musculus partial Kcnq1 gene for potassium channel protein and
            associated 187740 bp genomic fragment
          Length = 187740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 298  tcatggacatcaacacggttg 318
            |||||||||||||||||||||
Sbjct: 6485 tcatggacatcaacacggttg 6505
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>dbj|AP001293.1| Mus musculus genomic DNA, chromosome 7, clone:B131, complete sequence
          Length = 108333

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   tcatggacatcaacacggttg 318
             |||||||||||||||||||||
Sbjct: 64838 tcatggacatcaacacggttg 64858
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>dbj|AP001917.2| Mus musculus genomic DNA , chromosome 7, clone:B131T
          Length = 68121

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   tcatggacatcaacacggttg 318
             |||||||||||||||||||||
Sbjct: 64839 tcatggacatcaacacggttg 64859
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>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 153     aatattttttaccgcctcaa 172
               ||||||||||||||||||||
Sbjct: 1713379 aatattttttaccgcctcaa 1713398
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>gb|AC102756.8| Mus musculus chromosome 3, clone RP24-167K1, complete sequence
          Length = 175712

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 203   cagcctgctgtgctgctgcatgcc 226
             ||||||||||||||| ||||||||
Sbjct: 35976 cagcctgctgtgctggtgcatgcc 35953
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>ref|XM_428050.1| PREDICTED: Gallus gallus similar to Sphingosine 1-phosphate
           receptor Edg-6 (S1P receptor Edg-6) (Endothelial
           differentiation G-protein coupled receptor 6)
           (LOC430495), mRNA
          Length = 1146

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 gcagcctgctgtgctgctgc 221
           ||||||||||||||||||||
Sbjct: 941 gcagcctgctgtgctgctgc 960
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>emb|AL772177.2| Human DNA sequence from clone RP11-353A5 on chromosome 1, complete
           sequence
          Length = 7826

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 272 ggttcttcctgctctca-ataatctgct 298
           ||||||||||||||||| ||||||||||
Sbjct: 733 ggttcttcctgctctcacataatctgct 760
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>emb|AL162595.17| Human DNA sequence from clone RP5-1061H20 on chromosome 1 Contains
            three novel genes, a novel pseudogene, the 5' end of the
            RAB4A gene for RAB4A, member RAS oncogene family and a
            CpG island, complete sequence
          Length = 115018

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                        
Query: 272  ggttcttcctgctctca-ataatctgct 298
            ||||||||||||||||| ||||||||||
Sbjct: 1265 ggttcttcctgctctcacataatctgct 1238
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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 152     aaatattttttaccgcctca 171
               ||||||||||||||||||||
Sbjct: 2432072 aaatattttttaccgcctca 2432091
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>gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, complete sequence
          Length = 170361

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 203   cagcctgctgtgctgctgcatgcc 226
             ||||||||||||||| ||||||||
Sbjct: 33894 cagcctgctgtgctggtgcatgcc 33917
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>emb|BX927397.10| Zebrafish DNA sequence from clone DKEY-87H7 in linkage group 7,
             complete sequence
          Length = 187890

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    taaacgtcttttgcagtatt 29
             ||||||||||||||||||||
Sbjct: 56112 taaacgtcttttgcagtatt 56131
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>gb|DQ271194.1| Mustela vison clone III2F22 microsatellite sequence
          Length = 855

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 64  tacaaagcatttaaaacatcagcataag 91
           ||||||||||||||| ||| ||||||||
Sbjct: 197 tacaaagcatttaaatcataagcataag 224
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>gb|AC010139.4|AC010139 Homo sapiens BAC clone RP11-194G10 from 3, complete sequence
          Length = 161407

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    gaagttcccaaaatattttt 161
              ||||||||||||||||||||
Sbjct: 123555 gaagttcccaaaatattttt 123536
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      taaaaggagtacaaagcatt 74
               ||||||||||||||||||||
Sbjct: 2385572 taaaaggagtacaaagcatt 2385553
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>gb|AC091493.2| Homo sapiens chromosome 3 clone RP11-357E4 map 3p, complete sequence
          Length = 186953

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   gaagttcccaaaatattttt 161
             ||||||||||||||||||||
Sbjct: 28789 gaagttcccaaaatattttt 28770
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>dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0036F10
          Length = 149415

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    taaaaggagtacaaagcatt 74
             ||||||||||||||||||||
Sbjct: 17030 taaaaggagtacaaagcatt 17011
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>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0007O20
          Length = 147363

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     taaaaggagtacaaagcatt 74
              ||||||||||||||||||||
Sbjct: 107373 taaaaggagtacaaagcatt 107354
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>gb|DQ299485.1| Hibiscus tiliaceus clone 3_08 glyceraldehyde-3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 794

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 aggttcttcctgctctcaat 290
           ||||||||||||||||||||
Sbjct: 350 aggttcttcctgctctcaat 369
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>gb|DQ299484.1| Hibiscus tiliaceus clone 3_03 glyceraldehyde-3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 794

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 aggttcttcctgctctcaat 290
           ||||||||||||||||||||
Sbjct: 350 aggttcttcctgctctcaat 369
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>gb|DQ299473.1| Hibiscus tiliaceus clone 3_06 glyceraldehyde-3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 793

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 aggttcttcctgctctcaat 290
           ||||||||||||||||||||
Sbjct: 349 aggttcttcctgctctcaat 368
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>gb|DQ299472.1| Hibiscus tiliaceus clone 3_03 glyceraldehyde-3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 794

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 aggttcttcctgctctcaat 290
           ||||||||||||||||||||
Sbjct: 350 aggttcttcctgctctcaat 369
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>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    aatattttttaccgcctcaa 172
              ||||||||||||||||||||
Sbjct: 174157 aatattttttaccgcctcaa 174176


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,047,725
Number of Sequences: 3902068
Number of extensions: 4047725
Number of successful extensions: 77463
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 77245
Number of HSP's gapped (non-prelim): 214
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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