ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast64g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 46 0.066
2gb|BC046983.1| Mus musculus glucocorticoid modulatory element bi... 40 4.0
3emb|CR940309.6| M.truncatula DNA sequence from clone MTH2-10C20 ... 40 4.0
4emb|AL034412.2|HS99M1 Human DNA sequence from clone RP6-99M1 on ... 40 4.0
5gb|AC011474.6| Homo sapiens chromosome 19 clone CTC-525D6, compl... 40 4.0
6dbj|AK134349.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 4.0
7dbj|AK163164.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 4.0
8ref|XM_573292.1| PREDICTED: Rattus norvegicus hematopoietic cell... 40 4.0
9gb|AF210433.1|AF210433 Mus musculus glucocorticoid modulatory el... 40 4.0
10emb|BX537301.12| Mouse DNA sequence from clone RP23-127O5 on chr... 40 4.0
11gb|AC108832.10| Mus musculus chromosome 7, clone RP23-242J3, com... 40 4.0
12gb|BC079081.1| Rattus norvegicus hematopoietic cell specific Lyn... 40 4.0
13emb|CT009511.9| M.truncatula DNA sequence from clone MTH2-69I7 o... 40 4.0
14ref|NM_020273.1| Mus musculus glucocorticoid modulatory element ... 40 4.0
15ref|NM_001011898.1| Rattus norvegicus hematopoietic cell specifi... 40 4.0
16emb|AL670660.8| Mouse DNA sequence from clone RP23-265D6 on chro... 40 4.0
17emb|Z74022.1|HSU90B3 Human DNA sequence from clone LL0XNC01-90B3... 40 4.0 
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 275     gtgccggggcatctggtgctgcg 297
               |||||||||||||||||||||||
Sbjct: 2533373 gtgccggggcatctggtgctgcg 2533395
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>gb|BC046983.1| Mus musculus glucocorticoid modulatory element binding protein 1,
           mRNA (cDNA clone MGC:54541 IMAGE:6477130), complete cds
          Length = 1925

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  taaaaatcgatctgtccaga 102
           ||||||||||||||||||||
Sbjct: 596 taaaaatcgatctgtccaga 577
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>emb|CR940309.6| M.truncatula DNA sequence from clone MTH2-10C20 on chromosome 3,
             complete sequence
          Length = 114380

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   cacagaagcaaagagtacac 147
             ||||||||||||||||||||
Sbjct: 98409 cacagaagcaaagagtacac 98390
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>emb|AL034412.2|HS99M1 Human DNA sequence from clone RP6-99M1 on chromosome Xp11.1-11.4
             Contains a novel pseudogene (GL004), complete sequence
          Length = 107049

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tttatgataaaacgttaata 33
             ||||||||||||||||||||
Sbjct: 27442 tttatgataaaacgttaata 27423
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>gb|AC011474.6| Homo sapiens chromosome 19 clone CTC-525D6, complete sequence
          Length = 194718

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   gggtgggacagacatgacac 237
             ||||||||||||||||||||
Sbjct: 25887 gggtgggacagacatgacac 25868
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>dbj|AK134349.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
           enriched library, clone:6030436O18
           product:glucocorticoid modulatory element binding
           protein 1, full insert sequence
          Length = 1876

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  taaaaatcgatctgtccaga 102
           ||||||||||||||||||||
Sbjct: 563 taaaaatcgatctgtccaga 544
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>dbj|AK163164.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730058C04 product:alpha
           thalassemia/mental retardation syndrome X-linked homolog
           (human), full insert sequence
          Length = 5433

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 127 gcacagaagcaaagagtaca 146
           ||||||||||||||||||||
Sbjct: 532 gcacagaagcaaagagtaca 513
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>ref|XM_573292.1| PREDICTED: Rattus norvegicus hematopoietic cell specific Lyn
           substrate 1 (predicted) (Hcls1_predicted), mRNA
          Length = 1978

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 ctggtgctgcgggctcgtcc 306
           ||||||||||||||||||||
Sbjct: 933 ctggtgctgcgggctcgtcc 914
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>gb|AF210433.1|AF210433 Mus musculus glucocorticoid modulatory element binding protein 1
           (Gmeb-1) mRNA, complete cds
          Length = 2486

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  taaaaatcgatctgtccaga 102
           ||||||||||||||||||||
Sbjct: 523 taaaaatcgatctgtccaga 504
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>emb|BX537301.12| Mouse DNA sequence from clone RP23-127O5 on chromosome 4, complete
             sequence
          Length = 103179

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    taaaaatcgatctgtccaga 102
             ||||||||||||||||||||
Sbjct: 60600 taaaaatcgatctgtccaga 60619
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>gb|AC108832.10| Mus musculus chromosome 7, clone RP23-242J3, complete sequence
          Length = 185083

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   caaagagtacacacagtgag 155
             ||||||||||||||||||||
Sbjct: 50593 caaagagtacacacagtgag 50612
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>gb|BC079081.1| Rattus norvegicus hematopoietic cell specific Lyn substrate 1, mRNA
           (cDNA clone MGC:94041 IMAGE:7122756), complete cds
          Length = 1976

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 ctggtgctgcgggctcgtcc 306
           ||||||||||||||||||||
Sbjct: 905 ctggtgctgcgggctcgtcc 886
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>emb|CT009511.9| M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3,
             complete sequence
          Length = 116999

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    ttttatgataaaacgttaat 32
             ||||||||||||||||||||
Sbjct: 86050 ttttatgataaaacgttaat 86031
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>ref|NM_020273.1| Mus musculus glucocorticoid modulatory element binding protein 1
           (Gmeb1), mRNA
          Length = 2486

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  taaaaatcgatctgtccaga 102
           ||||||||||||||||||||
Sbjct: 523 taaaaatcgatctgtccaga 504
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>ref|NM_001011898.1| Rattus norvegicus hematopoietic cell specific Lyn substrate 1
           (Hcls1), mRNA
          Length = 1976

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 ctggtgctgcgggctcgtcc 306
           ||||||||||||||||||||
Sbjct: 905 ctggtgctgcgggctcgtcc 886
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>emb|AL670660.8| Mouse DNA sequence from clone RP23-265D6 on chromosome X, complete
             sequence
          Length = 181805

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   gcacagaagcaaagagtaca 146
             ||||||||||||||||||||
Sbjct: 41141 gcacagaagcaaagagtaca 41160
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>emb|Z74022.1|HSU90B3 Human DNA sequence from clone LL0XNC01-90B3 on chromosome Xp11,
             complete sequence
          Length = 35609

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tttatgataaaacgttaata 33
             ||||||||||||||||||||
Sbjct: 31976 tttatgataaaacgttaata 31995


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,511,689
Number of Sequences: 3902068
Number of extensions: 2511689
Number of successful extensions: 45551
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45529
Number of HSP's gapped (non-prelim): 22
length of query: 308
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 286
effective length of database: 17,147,199,772
effective search space: 4904099134792
effective search space used: 4904099134792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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