ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast64g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475723.1| Oryza sativa (japonica cultivar-group), predic... 74 3e-10
2gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome... 74 3e-10
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
4dbj|AK061147.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
5ref|NM_191210.1| Oryza sativa (japonica cultivar-group), predic... 68 2e-08
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
7dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
8ref|XM_468393.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
9ref|XM_507548.1| PREDICTED Oryza sativa (japonica cultivar-group... 54 3e-04
10ref|XM_507046.2| PREDICTED Oryza sativa (japonica cultivar-group... 54 3e-04
11ref|XM_464400.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
13dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
14dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
15dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
16dbj|AK106084.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
17dbj|AK099251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
18dbj|AK060691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
19dbj|AK060243.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
20gb|AY107654.1| Zea mays PCO095720 mRNA sequence 44 0.27
21gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
22emb|Y11548.1|SPSNBCDE S.pristinaespiralis snbC gene & snbDE gene 42 1.1
23emb|X98690.1|SPSNBCGEN S.pristinaespiralis snbC and snbDE genes 42 1.1
24gb|AC092867.7| Homo sapiens 12p BAC RP11-100C20 (Roswell Park Ca... 42 1.1
25gb|AC023796.22| Homo sapiens 12p BAC RP11-625L16 (Roswell Park C... 42 1.1
26dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
27dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.1
28dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.1
29dbj|AK100958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
31emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.1
32gb|BT018449.1| Zea mays clone EL01N0407B08.d mRNA sequence 40 4.3
33gb|AC114671.14| Mus musculus chromosome 5, clone RP24-199D21, co... 40 4.3
34gb|AC126799.3| Mus musculus BAC clone RP24-388B22 from chromosom... 40 4.3
35emb|AL391094.12| Human DNA sequence from clone RP5-903E17 on chr... 40 4.3
36emb|BX571813.8| Zebrafish DNA sequence from clone DKEY-14O6 in l... 40 4.3
37emb|BX537137.13| Zebrafish DNA sequence from clone DKEYP-87D1 in... 40 4.3
38gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 4.3
39gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytans... 40 4.3
40gb|AC093788.3| Homo sapiens BAC clone RP11-218F10 from 4, comple... 40 4.3
41gb|AC156609.8| Mus musculus chromosome 15, clone RP23-56E21, com... 40 4.3
42emb|Z22577.1|SAGLCTRAA S.antibioticus membrane protein, lipoprot... 40 4.3
43gb|AY106178.1| Zea mays PCO130453 mRNA sequence 40 4.3
44gb|AC121135.9| Mus musculus chromosome 18, clone RP23-328A22, co... 40 4.3
45emb|CT025577.11| Mouse DNA sequence from clone RP24-172I18 on ch... 40 4.3
46gb|AC005325.1|AC005325 Homo sapiens chromosome 17, clone hRPK.60... 40 4.3 
>ref|XM_475723.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1098

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 236  cctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaagaggta 295
            ||||||||||||||| |||||||| ||||| || |||||||| |||||||| |||  |||
Sbjct: 1032 cctctggccgacgagtacgttggccgcctccgtcgggtggaacgcgtcccagaaggcgta 973

                                         
Query: 296  ctcgttgcggttggggcagggcgtctgga 324
            |||||  | ||||| ||| ||||||||||
Sbjct: 972  ctcgtgcctgttggcgcacggcgtctgga 944
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>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10,
              complete sequence
          Length = 143073

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                          
Query: 236    cctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaagaggta 295
              ||||||||||||||| |||||||| ||||| || |||||||| |||||||| |||  |||
Sbjct: 123223 cctctggccgacgagtacgttggccgcctccgtcgggtggaacgcgtcccagaaggcgta 123282

                                           
Query: 296    ctcgttgcggttggggcagggcgtctgga 324
              |||||  | ||||| ||| ||||||||||
Sbjct: 123283 ctcgtgcctgttggcgcacggcgtctgga 123311
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                            
Query: 236      cctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaagaggta 295
                ||||||||||||||| |||||||| ||||| || |||||||| |||||||| |||  |||
Sbjct: 25482862 cctctggccgacgagtacgttggccgcctccgtcgggtggaacgcgtcccagaaggcgta 25482921

                                             
Query: 296      ctcgttgcggttggggcagggcgtctgga 324
                |||||  | ||||| ||| ||||||||||
Sbjct: 25482922 ctcgtgcctgttggcgcacggcgtctgga 25482950



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 267      gtggggtggaaggcgtcccaaaaga 291
                |||||||||||||||||||| ||||
Sbjct: 20446162 gtggggtggaaggcgtcccagaaga 20446138
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>dbj|AK061147.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D08, full
            insert sequence
          Length = 1315

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 236  cctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaagaggta 295
            ||||||||||||||| |||||||| ||||| || |||||||| |||||||| |||  |||
Sbjct: 1096 cctctggccgacgagtacgttggccgcctccgtcgggtggaacgcgtcccagaaggcgta 1037

                                         
Query: 296  ctcgttgcggttggggcagggcgtctgga 324
            |||||  | ||||| ||| ||||||||||
Sbjct: 1036 ctcgtgcctgttggcgcacggcgtctgga 1008
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>ref|NM_191210.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1092

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 230  gtaggccctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaa 289
            |||||||||| |||||||||  |  ||||| ||||| || |||||||| |||||||| ||
Sbjct: 1032 gtaggccctccggccgacgaagatattggcagcctccgtcgggtggaacgcgtcccagaa 973

                                              
Query: 290  gaggtactcgttgcggttggggcagggcgtctgg 323
            |||||||||||  ||||||| ||| |||| ||||
Sbjct: 972  gaggtactcgtcccggttggcgcacggcgcctgg 939
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                            
Query: 230      gtaggccctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaa 289
                |||||||||| |||||||||  |  ||||| ||||| || |||||||| |||||||| ||
Sbjct: 31326265 gtaggccctccggccgacgaagatattggcagcctccgtcgggtggaacgcgtcccagaa 31326206

                                                  
Query: 290      gaggtactcgttgcggttggggcagggcgtctgg 323
                |||||||||||  ||||||| ||| |||| ||||
Sbjct: 31326205 gaggtactcgtcccggttggcgcacggcgcctgg 31326172
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>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0481E12
          Length = 161563

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                         
Query: 230   gtaggccctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaa 289
             |||||||||| |||||||||  |  ||||| ||||| || |||||||| |||||||| ||
Sbjct: 80548 gtaggccctccggccgacgaagatattggcagcctccgtcgggtggaacgcgtcccagaa 80489

                                               
Query: 290   gaggtactcgttgcggttggggcagggcgtctgg 323
             |||||||||||  ||||||| ||| |||| ||||
Sbjct: 80488 gaggtactcgtcccggttggcgcacggcgcctgg 80455
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>ref|XM_468393.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1517

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 254  gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 296
            |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 1083 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 1041
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>ref|XM_507548.1| PREDICTED Oryza sativa (japonica cultivar-group), P0643F09.14 mRNA
          Length = 1525

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 254  gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 296
            |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 1083 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 1041
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>ref|XM_507046.2| PREDICTED Oryza sativa (japonica cultivar-group), P0643F09.14 mRNA
          Length = 1558

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 254  gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 296
            |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 1083 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 1041
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>ref|XM_464400.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1310

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 267  gtggggtggaaggcgtcccaaaagaggtact 297
            |||||||||||||||||||| ||||||||||
Sbjct: 1099 gtggggtggaaggcgtcccagaagaggtact 1069
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 254      gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 296
                |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 34986565 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 34986607



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                              
Query: 267     gtggggtggaaggcgtcccaaaagaggtact 297
               |||||||||||||||||||| ||||||||||
Sbjct: 4948172 gtggggtggaaggcgtcccagaagaggtact 4948142
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>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0031B09
          Length = 132729

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 267   gtggggtggaaggcgtcccaaaagaggtact 297
             |||||||||||||||||||| ||||||||||
Sbjct: 19298 gtggggtggaaggcgtcccagaagaggtact 19268
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>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1145_F01
          Length = 113755

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 267   gtggggtggaaggcgtcccaaaagaggtact 297
             |||||||||||||||||||| ||||||||||
Sbjct: 92911 gtggggtggaaggcgtcccagaagaggtact 92881
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>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643F09
          Length = 161001

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 254   gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 296
             |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 46906 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 46948
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>dbj|AK106084.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B01, full
            insert sequence
          Length = 1525

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 254  gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 296
            |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 1083 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 1041
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>dbj|AK099251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154O11, full
            insert sequence
          Length = 1517

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 254  gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 296
            |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 1083 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 1041
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>dbj|AK060691.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-C02, full
            insert sequence
          Length = 1310

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 267  gtggggtggaaggcgtcccaaaagaggtact 297
            |||||||||||||||||||| ||||||||||
Sbjct: 1099 gtggggtggaaggcgtcccagaagaggtact 1069
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>dbj|AK060243.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G01, full
            insert sequence
          Length = 1558

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 254  gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 296
            |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 1083 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 1041
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>gb|AY107654.1| Zea mays PCO095720 mRNA sequence
          Length = 972

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 254 gttggcggcctcggtggggtggaaggcgtcccaaaaga 291
           ||||||||| || |||||||||||| ||||||| ||||
Sbjct: 644 gttggcggcgtccgtggggtggaagccgtcccagaaga 607
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>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01,
              complete sequence
          Length = 173074

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 267    gtggggtggaaggcgtcccaaaaga 291
              |||||||||||||||||||| ||||
Sbjct: 117907 gtggggtggaaggcgtcccagaaga 117883
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>emb|Y11548.1|SPSNBCDE S.pristinaespiralis snbC gene & snbDE gene
          Length = 22449

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 215  ggcgagccgggcggcgtaggc 235
            |||||||||||||||||||||
Sbjct: 3693 ggcgagccgggcggcgtaggc 3673
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>emb|X98690.1|SPSNBCGEN S.pristinaespiralis snbC and snbDE genes
          Length = 22449

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 215  ggcgagccgggcggcgtaggc 235
            |||||||||||||||||||||
Sbjct: 3693 ggcgagccgggcggcgtaggc 3673
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>gb|AC092867.7| Homo sapiens 12p BAC RP11-100C20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 195583

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    atttcactgacatataaatgt 148
              |||||||||||||||||||||
Sbjct: 131025 atttcactgacatataaatgt 131005
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>gb|AC023796.22| Homo sapiens 12p BAC RP11-625L16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 173342

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    atttcactgacatataaatgt 148
              |||||||||||||||||||||
Sbjct: 154854 atttcactgacatataaatgt 154834
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 254      gttggcggcctcggtggggtggaaggcgtccca 286
                |||||| ||||| || |||||||||||||||||
Sbjct: 10069266 gttggccgcctccgtcgggtggaaggcgtccca 10069298
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                
Query: 182     gagggtgctgatgtcgacggggtgcacgtcggaggcgagccgggcggcg 230
               ||||| |||| |||||||||||||  |||||| || ||||| |||||||
Sbjct: 1816511 gagggcgctggtgtcgacggggtgggcgtcggcggtgagccaggcggcg 1816559



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 211     cggaggcgagccgggcggcg 230
               ||||||||||||||||||||
Sbjct: 6513967 cggaggcgagccgggcggcg 6513986
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 256     tggcggcctcggtggggtggaaggcgtcc 284
               |||||| ||||||||||| ||||||||||
Sbjct: 4670315 tggcgggctcggtggggtcgaaggcgtcc 4670287
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>dbj|AK100958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140K23, full
            insert sequence
          Length = 1556

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 267  gtggggtggaaggcgtcccaaaaga 291
            |||||||||||||||||||| ||||
Sbjct: 1113 gtggggtggaaggcgtcccagaaga 1089
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 254      gttggcggcctcggtggggtggaaggcgtccca 286
                |||||| ||||| || |||||||||||||||||
Sbjct: 10069151 gttggccgcctccgtcgggtggaaggcgtccca 10069183
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>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 254   gttggcggcctcggtggggtggaaggcgtccca 286
             |||||| ||||| || |||||||||||||||||
Sbjct: 93355 gttggccgcctccgtcgggtggaaggcgtccca 93323
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>gb|BT018449.1| Zea mays clone EL01N0407B08.d mRNA sequence
          Length = 1302

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 270 gggtggaaggcgtcccaaaagaggtactcgttgcggttggggca 313
           ||||||||||||||||| |||| |||   |||||||||| ||||
Sbjct: 946 gggtggaaggcgtcccagaagatgtaggagttgcggttgaggca 903
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>gb|AC114671.14| Mus musculus chromosome 5, clone RP24-199D21, complete sequence
          Length = 172228

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   gacatataaatgtatatcat 155
             ||||||||||||||||||||
Sbjct: 42812 gacatataaatgtatatcat 42831
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>gb|AC126799.3| Mus musculus BAC clone RP24-388B22 from chromosome 13, complete
             sequence
          Length = 168873

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    ttgtatgtgttgtacagaatcctg 122
             |||| |||||||||||||||||||
Sbjct: 13917 ttgtttgtgttgtacagaatcctg 13894
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>emb|AL391094.12| Human DNA sequence from clone RP5-903E17 on chromosome 1 Contains the
             3' end of a novel gene (FLJ10199) and the 5' end of the
             gene for a novel protein (FLJ25234), complete sequence
          Length = 45670

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 24    catggttgcccatctaaaacactgtgag 51
             ||||||||||||| | ||||||||||||
Sbjct: 10313 catggttgcccatattaaacactgtgag 10286
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>emb|BX571813.8| Zebrafish DNA sequence from clone DKEY-14O6 in linkage group 3, complete
              sequence
          Length = 233901

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    atgtgttgtacagaatcctg 122
              ||||||||||||||||||||
Sbjct: 192740 atgtgttgtacagaatcctg 192759
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>emb|BX537137.13| Zebrafish DNA sequence from clone DKEYP-87D1 in linkage group 20
             Contains two novel genes and two CpG islands, complete
             sequence
          Length = 200339

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   atgtgttgtacagaatcctg 122
             ||||||||||||||||||||
Sbjct: 36576 atgtgttgtacagaatcctg 36595
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 246     acgagcacgttggcggcctc 265
               ||||||||||||||||||||
Sbjct: 1119850 acgagcacgttggcggcctc 1119831
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>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor agent
             ansamitocin biosynthetic gene cluster I, partial sequence
          Length = 82746

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 206   cacgtcggaggcgagccgggcggc 229
             |||||||| |||||||||||||||
Sbjct: 80680 cacgtcggcggcgagccgggcggc 80703
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>gb|AC093788.3| Homo sapiens BAC clone RP11-218F10 from 4, complete sequence
          Length = 160853

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   agaatcctgcatatatttca 133
             ||||||||||||||||||||
Sbjct: 30086 agaatcctgcatatatttca 30105
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>gb|AC156609.8| Mus musculus chromosome 15, clone RP23-56E21, complete sequence
          Length = 118659

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   cactgacatataaatgtata 151
             ||||||||||||||||||||
Sbjct: 22343 cactgacatataaatgtata 22324
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>emb|Z22577.1|SAGLCTRAA S.antibioticus membrane protein, lipoprotein, and glycosyltransferase
            genes
          Length = 3389

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  gtcggaggcgagccgggcgg 228
            ||||||||||||||||||||
Sbjct: 1048 gtcggaggcgagccgggcgg 1029
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>gb|AY106178.1| Zea mays PCO130453 mRNA sequence
          Length = 607

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 270 gggtggaaggcgtcccaaaagaggtactcgttgcggttggggca 313
           ||||||||||||||||| |||| |||   |||||||||| ||||
Sbjct: 247 gggtggaaggcgtcccagaagatgtaggagttgcggttgaggca 204
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>gb|AC121135.9| Mus musculus chromosome 18, clone RP23-328A22, complete sequence
          Length = 189515

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   tatttcactgacatataaat 146
             ||||||||||||||||||||
Sbjct: 44644 tatttcactgacatataaat 44625
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>emb|CT025577.11| Mouse DNA sequence from clone RP24-172I18 on chromosome 12, complete
             sequence
          Length = 143997

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   gcatatatttcactgacata 141
             ||||||||||||||||||||
Sbjct: 72567 gcatatatttcactgacata 72548
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>gb|AC005325.1|AC005325 Homo sapiens chromosome 17, clone hRPK.60_A_24, complete sequence
          Length = 165228

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    tcatcttgtatgtgttgtac 113
             ||||||||||||||||||||
Sbjct: 68840 tcatcttgtatgtgttgtac 68821


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,326,642
Number of Sequences: 3902068
Number of extensions: 2326642
Number of successful extensions: 46724
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46353
Number of HSP's gapped (non-prelim): 371
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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