ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast64f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
2dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
3dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
4dbj|AK059314.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
5gb|AC006649.1| Caenorhabditis elegans fosmid H01M10, complete se... 42 0.92
6gb|AC012447.8| Homo sapiens BAC clone RP11-204L24 from 2, comple... 42 0.92
7dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
8gb|AC163225.4| Mus musculus chromosome 8, clone RP23-319L22, com... 40 3.6
9emb|X82444.1|SPPMT1 S.pombe pmt1+ gene 40 3.6
10emb|AL133156.1|SPAC227 S.pombe chromosome I cosmid c227 40 3.6
11emb|AL109731.1|SPBC19C2 S.pombe chromosome II cosmid c19C2 40 3.6
12emb|CR361561.8| Zebrafish DNA sequence from clone CH211-218K8 in... 40 3.6
13gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K20 ma... 40 3.6
14gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold 40 3.6
15emb|BX293993.10| Zebrafish DNA sequence from clone DKEYP-5G9, co... 40 3.6
16emb|BX000477.13| Zebrafish DNA sequence from clone CH211-59D8 in... 40 3.6
17emb|BX649431.16| Zebrafish DNA sequence from clone DKEYP-44B5 in... 40 3.6
18ref|NM_001021584.1| Schizosaccharomyces pombe 972h- hypothetical... 40 3.6
19ref|NM_001018363.1| Schizosaccharomyces pombe 972h- hypothetical... 40 3.6
20dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
21emb|AJ627213.1| Gallus gallus primary C-C chemokine receptor clu... 40 3.6
22dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
23gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, co... 40 3.6
24dbj|AB037714.1| Clostridium butyricum bont/E gene for type E bot... 40 3.6
25dbj|AB037713.1| Clostridium butyricum bont/E gene for type E bot... 40 3.6
26dbj|AB037712.1| Clostridium butyricum bont/E gene for type E bot... 40 3.6
27dbj|AB037711.1| Clostridium butyricum bont/E gene for type E bot... 40 3.6
28dbj|AB037710.1| Clostridium butyricum bont/E gene for type E bot... 40 3.6
29dbj|AB037709.1| Clostridium butyricum bont/E gene for type E bot... 40 3.6
30dbj|AB037708.1| Clostridium butyricum bont/E gene for type E bot... 40 3.6
31dbj|AB037707.1| Clostridium butyricum bont/E gene for type E bot... 40 3.6
32dbj|AB037706.1| Clostridium butyricum bont/E gene for type E bot... 40 3.6
33dbj|AB037705.1| Clostridium butyricum bont/E gene for type E bot... 40 3.6
34dbj|AB037704.1| Clostridium butyricum bont/E gene for type E bot... 40 3.6

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                
Query: 80      catgcgacatttaacagatcaaaaatcaaacag 112
               |||||||||| | ||||||||||||||||||||
Sbjct: 6969000 catgcgacatcttacagatcaaaaatcaaacag 6968968



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 36      ttgcagcaatgcaagtagcaa 56
               |||||||||||||||||||||
Sbjct: 2168422 ttgcagcaatgcaagtagcaa 2168442



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>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0492F05
          Length = 159242

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 80     catgcgacatttaacagatcaaaaatcaaacag 112
              |||||||||| | ||||||||||||||||||||
Sbjct: 136724 catgcgacatcttacagatcaaaaatcaaacag 136692



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>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0443E07
          Length = 159440

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 80    catgcgacatttaacagatcaaaaatcaaacag 112
             |||||||||| | ||||||||||||||||||||
Sbjct: 90818 catgcgacatcttacagatcaaaaatcaaacag 90786



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>dbj|AK059314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G12, full
           insert sequence
          Length = 834

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 80  catgcgacatttaacagatcaaaaatcaaacag 112
           |||||||||| | ||||||||||||||||||||
Sbjct: 756 catgcgacatcttacagatcaaaaatcaaacag 724



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>gb|AC006649.1| Caenorhabditis elegans fosmid H01M10, complete sequence
          Length = 14078

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 7    gagttgataaacatcatcaat 27
            |||||||||||||||||||||
Sbjct: 8660 gagttgataaacatcatcaat 8680



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>gb|AC012447.8| Homo sapiens BAC clone RP11-204L24 from 2, complete sequence
          Length = 166305

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 129    gtgctgcctctgcattactgt 149
              |||||||||||||||||||||
Sbjct: 126348 gtgctgcctctgcattactgt 126368



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>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0480E02
          Length = 141862

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 36    ttgcagcaatgcaagtagcaa 56
             |||||||||||||||||||||
Sbjct: 89534 ttgcagcaatgcaagtagcaa 89554



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>gb|AC163225.4| Mus musculus chromosome 8, clone RP23-319L22, complete sequence
          Length = 192661

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 93   acagatcaaaaatcaaacag 112
            ||||||||||||||||||||
Sbjct: 3125 acagatcaaaaatcaaacag 3106



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>emb|X82444.1|SPPMT1 S.pombe pmt1+ gene
          Length = 2445

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 10  ttgataaacatcatcaatactcca 33
           |||| |||||||||||||||||||
Sbjct: 691 ttgaaaaacatcatcaatactcca 668



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>emb|AL133156.1|SPAC227 S.pombe chromosome I cosmid c227
          Length = 32799

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    atcatcaatactccaaattg 38
             ||||||||||||||||||||
Sbjct: 13037 atcatcaatactccaaattg 13056



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>emb|AL109731.1|SPBC19C2 S.pombe chromosome II cosmid c19C2
          Length = 30799

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 10   ttgataaacatcatcaatactcca 33
            |||| |||||||||||||||||||
Sbjct: 1278 ttgaaaaacatcatcaatactcca 1255



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>emb|CR361561.8| Zebrafish DNA sequence from clone CH211-218K8 in linkage group 25,
              complete sequence
          Length = 200274

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    gcaaacaagtctgaaaacag 206
              ||||||||||||||||||||
Sbjct: 109282 gcaaacaagtctgaaaacag 109301



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>gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K20 map B68, complete
             sequence
          Length = 118196

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    aacagatcaaaaatcaaaca 111
             ||||||||||||||||||||
Sbjct: 61000 aacagatcaaaaatcaaaca 61019



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>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold
          Length = 470930

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     cgacatttaacagatcaaaa 103
              ||||||||||||||||||||
Sbjct: 289191 cgacatttaacagatcaaaa 289210



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>emb|BX293993.10| Zebrafish DNA sequence from clone DKEYP-5G9, complete sequence
          Length = 173227

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  gcaaacaagtctgaaaacag 206
            ||||||||||||||||||||
Sbjct: 9040 gcaaacaagtctgaaaacag 9021



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>emb|BX000477.13| Zebrafish DNA sequence from clone CH211-59D8 in linkage group 10,
              complete sequence
          Length = 176689

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    gcaaacaagtctgaaaacag 206
              ||||||||||||||||||||
Sbjct: 101035 gcaaacaagtctgaaaacag 101016



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>emb|BX649431.16| Zebrafish DNA sequence from clone DKEYP-44B5 in linkage group 14,
             complete sequence
          Length = 185020

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   gcaaacaagtctgaaaacag 206
             ||||||||||||||||||||
Sbjct: 37836 gcaaacaagtctgaaaacag 37817



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>ref|NM_001021584.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC19C2.02),
           partial mRNA
          Length = 993

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 10  ttgataaacatcatcaatactcca 33
           |||| |||||||||||||||||||
Sbjct: 552 ttgaaaaacatcatcaatactcca 529



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>ref|NM_001018363.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC227.09),
           partial mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 19  atcatcaatactccaaattg 38
           ||||||||||||||||||||
Sbjct: 649 atcatcaatactccaaattg 668



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 92       aacagatcaaaaatcaaaca 111
                ||||||||||||||||||||
Sbjct: 29423334 aacagatcaaaaatcaaaca 29423353



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>emb|AJ627213.1| Gallus gallus primary C-C chemokine receptor cluster
          Length = 210954

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    agtgctgcctctgcattact 147
              ||||||||||||||||||||
Sbjct: 182556 agtgctgcctctgcattact 182575



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>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0034A04
          Length = 151263

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    aacagatcaaaaatcaaaca 111
             ||||||||||||||||||||
Sbjct: 86256 aacagatcaaaaatcaaaca 86275



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>gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, complete sequence
          Length = 197546

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     acagatcaaaaatcaaacag 112
              ||||||||||||||||||||
Sbjct: 161713 acagatcaaaaatcaaacag 161694



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>dbj|AB037714.1| Clostridium butyricum bont/E gene for type E botulinum toxin,
            complete cds, strain:LCL 095
          Length = 3835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 85   gacatttaacagatcaaaaatcaa 108
            ||||||||| ||||||||||||||
Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116



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>dbj|AB037713.1| Clostridium butyricum bont/E gene for type E botulinum toxin,
            complete cds, strain:LCL 063
          Length = 3835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 85   gacatttaacagatcaaaaatcaa 108
            ||||||||| ||||||||||||||
Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116



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>dbj|AB037712.1| Clostridium butyricum bont/E gene for type E botulinum toxin,
            complete cds, strain:KZ 1891
          Length = 3835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 85   gacatttaacagatcaaaaatcaa 108
            ||||||||| ||||||||||||||
Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116



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>dbj|AB037711.1| Clostridium butyricum bont/E gene for type E botulinum toxin,
            complete cds, strain:KZ 1890
          Length = 3835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 85   gacatttaacagatcaaaaatcaa 108
            ||||||||| ||||||||||||||
Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116



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>dbj|AB037710.1| Clostridium butyricum bont/E gene for type E botulinum toxin,
            complete cds, strain:KZ 1889
          Length = 3835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 85   gacatttaacagatcaaaaatcaa 108
            ||||||||| ||||||||||||||
Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116



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>dbj|AB037709.1| Clostridium butyricum bont/E gene for type E botulinum toxin,
            complete cds, strain:KZ 1887
          Length = 3835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 85   gacatttaacagatcaaaaatcaa 108
            ||||||||| ||||||||||||||
Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116



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>dbj|AB037708.1| Clostridium butyricum bont/E gene for type E botulinum toxin,
            complete cds, strain:KZ 1886
          Length = 3835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 85   gacatttaacagatcaaaaatcaa 108
            ||||||||| ||||||||||||||
Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116



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>dbj|AB037707.1| Clostridium butyricum bont/E gene for type E botulinum toxin,
            complete cds, strain:KZ 1898
          Length = 3835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 85   gacatttaacagatcaaaaatcaa 108
            ||||||||| ||||||||||||||
Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116



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>dbj|AB037706.1| Clostridium butyricum bont/E gene for type E botulinum toxin,
            complete cds, strain:KZ 1897
          Length = 3835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 85   gacatttaacagatcaaaaatcaa 108
            ||||||||| ||||||||||||||
Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116



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>dbj|AB037705.1| Clostridium butyricum bont/E gene for type E botulinum toxin,
            complete cds, strain:KZ 1899
          Length = 3835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 85   gacatttaacagatcaaaaatcaa 108
            ||||||||| ||||||||||||||
Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116



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>dbj|AB037704.1| Clostridium butyricum bont/E gene for type E botulinum toxin,
            complete cds, strain:LCL 155
          Length = 3835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 85   gacatttaacagatcaaaaatcaa 108
            ||||||||| ||||||||||||||
Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,211,547
Number of Sequences: 3902068
Number of extensions: 2211547
Number of successful extensions: 37834
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37755
Number of HSP's gapped (non-prelim): 79
length of query: 278
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 256
effective length of database: 17,147,199,772
effective search space: 4389683141632
effective search space used: 4389683141632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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