| Clone Name | rbast64f05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 80 catgcgacatttaacagatcaaaaatcaaacag 112 |||||||||| | |||||||||||||||||||| Sbjct: 6969000 catgcgacatcttacagatcaaaaatcaaacag 6968968 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 ttgcagcaatgcaagtagcaa 56 ||||||||||||||||||||| Sbjct: 2168422 ttgcagcaatgcaagtagcaa 2168442
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 80 catgcgacatttaacagatcaaaaatcaaacag 112 |||||||||| | |||||||||||||||||||| Sbjct: 136724 catgcgacatcttacagatcaaaaatcaaacag 136692
>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E07 Length = 159440 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 80 catgcgacatttaacagatcaaaaatcaaacag 112 |||||||||| | |||||||||||||||||||| Sbjct: 90818 catgcgacatcttacagatcaaaaatcaaacag 90786
>dbj|AK059314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G12, full insert sequence Length = 834 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 80 catgcgacatttaacagatcaaaaatcaaacag 112 |||||||||| | |||||||||||||||||||| Sbjct: 756 catgcgacatcttacagatcaaaaatcaaacag 724
>gb|AC006649.1| Caenorhabditis elegans fosmid H01M10, complete sequence Length = 14078 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 gagttgataaacatcatcaat 27 ||||||||||||||||||||| Sbjct: 8660 gagttgataaacatcatcaat 8680
>gb|AC012447.8| Homo sapiens BAC clone RP11-204L24 from 2, complete sequence Length = 166305 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 gtgctgcctctgcattactgt 149 ||||||||||||||||||||| Sbjct: 126348 gtgctgcctctgcattactgt 126368
>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480E02 Length = 141862 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 ttgcagcaatgcaagtagcaa 56 ||||||||||||||||||||| Sbjct: 89534 ttgcagcaatgcaagtagcaa 89554
>gb|AC163225.4| Mus musculus chromosome 8, clone RP23-319L22, complete sequence Length = 192661 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 acagatcaaaaatcaaacag 112 |||||||||||||||||||| Sbjct: 3125 acagatcaaaaatcaaacag 3106
>emb|X82444.1|SPPMT1 S.pombe pmt1+ gene Length = 2445 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 ttgataaacatcatcaatactcca 33 |||| ||||||||||||||||||| Sbjct: 691 ttgaaaaacatcatcaatactcca 668
>emb|AL133156.1|SPAC227 S.pombe chromosome I cosmid c227 Length = 32799 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 atcatcaatactccaaattg 38 |||||||||||||||||||| Sbjct: 13037 atcatcaatactccaaattg 13056
>emb|AL109731.1|SPBC19C2 S.pombe chromosome II cosmid c19C2 Length = 30799 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 ttgataaacatcatcaatactcca 33 |||| ||||||||||||||||||| Sbjct: 1278 ttgaaaaacatcatcaatactcca 1255
>emb|CR361561.8| Zebrafish DNA sequence from clone CH211-218K8 in linkage group 25, complete sequence Length = 200274 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 gcaaacaagtctgaaaacag 206 |||||||||||||||||||| Sbjct: 109282 gcaaacaagtctgaaaacag 109301
>gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K20 map B68, complete sequence Length = 118196 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aacagatcaaaaatcaaaca 111 |||||||||||||||||||| Sbjct: 61000 aacagatcaaaaatcaaaca 61019
>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold Length = 470930 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cgacatttaacagatcaaaa 103 |||||||||||||||||||| Sbjct: 289191 cgacatttaacagatcaaaa 289210
>emb|BX293993.10| Zebrafish DNA sequence from clone DKEYP-5G9, complete sequence Length = 173227 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gcaaacaagtctgaaaacag 206 |||||||||||||||||||| Sbjct: 9040 gcaaacaagtctgaaaacag 9021
>emb|BX000477.13| Zebrafish DNA sequence from clone CH211-59D8 in linkage group 10, complete sequence Length = 176689 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gcaaacaagtctgaaaacag 206 |||||||||||||||||||| Sbjct: 101035 gcaaacaagtctgaaaacag 101016
>emb|BX649431.16| Zebrafish DNA sequence from clone DKEYP-44B5 in linkage group 14, complete sequence Length = 185020 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gcaaacaagtctgaaaacag 206 |||||||||||||||||||| Sbjct: 37836 gcaaacaagtctgaaaacag 37817
>ref|NM_001021584.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC19C2.02), partial mRNA Length = 993 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 ttgataaacatcatcaatactcca 33 |||| ||||||||||||||||||| Sbjct: 552 ttgaaaaacatcatcaatactcca 529
>ref|NM_001018363.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC227.09), partial mRNA Length = 1254 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 atcatcaatactccaaattg 38 |||||||||||||||||||| Sbjct: 649 atcatcaatactccaaattg 668
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aacagatcaaaaatcaaaca 111 |||||||||||||||||||| Sbjct: 29423334 aacagatcaaaaatcaaaca 29423353
>emb|AJ627213.1| Gallus gallus primary C-C chemokine receptor cluster Length = 210954 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 agtgctgcctctgcattact 147 |||||||||||||||||||| Sbjct: 182556 agtgctgcctctgcattact 182575
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aacagatcaaaaatcaaaca 111 |||||||||||||||||||| Sbjct: 86256 aacagatcaaaaatcaaaca 86275
>gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, complete sequence Length = 197546 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 acagatcaaaaatcaaacag 112 |||||||||||||||||||| Sbjct: 161713 acagatcaaaaatcaaacag 161694
>dbj|AB037714.1| Clostridium butyricum bont/E gene for type E botulinum toxin, complete cds, strain:LCL 095 Length = 3835 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gacatttaacagatcaaaaatcaa 108 ||||||||| |||||||||||||| Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116
>dbj|AB037713.1| Clostridium butyricum bont/E gene for type E botulinum toxin, complete cds, strain:LCL 063 Length = 3835 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gacatttaacagatcaaaaatcaa 108 ||||||||| |||||||||||||| Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116
>dbj|AB037712.1| Clostridium butyricum bont/E gene for type E botulinum toxin, complete cds, strain:KZ 1891 Length = 3835 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gacatttaacagatcaaaaatcaa 108 ||||||||| |||||||||||||| Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116
>dbj|AB037711.1| Clostridium butyricum bont/E gene for type E botulinum toxin, complete cds, strain:KZ 1890 Length = 3835 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gacatttaacagatcaaaaatcaa 108 ||||||||| |||||||||||||| Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116
>dbj|AB037710.1| Clostridium butyricum bont/E gene for type E botulinum toxin, complete cds, strain:KZ 1889 Length = 3835 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gacatttaacagatcaaaaatcaa 108 ||||||||| |||||||||||||| Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116
>dbj|AB037709.1| Clostridium butyricum bont/E gene for type E botulinum toxin, complete cds, strain:KZ 1887 Length = 3835 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gacatttaacagatcaaaaatcaa 108 ||||||||| |||||||||||||| Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116
>dbj|AB037708.1| Clostridium butyricum bont/E gene for type E botulinum toxin, complete cds, strain:KZ 1886 Length = 3835 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gacatttaacagatcaaaaatcaa 108 ||||||||| |||||||||||||| Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116
>dbj|AB037707.1| Clostridium butyricum bont/E gene for type E botulinum toxin, complete cds, strain:KZ 1898 Length = 3835 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gacatttaacagatcaaaaatcaa 108 ||||||||| |||||||||||||| Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116
>dbj|AB037706.1| Clostridium butyricum bont/E gene for type E botulinum toxin, complete cds, strain:KZ 1897 Length = 3835 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gacatttaacagatcaaaaatcaa 108 ||||||||| |||||||||||||| Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116
>dbj|AB037705.1| Clostridium butyricum bont/E gene for type E botulinum toxin, complete cds, strain:KZ 1899 Length = 3835 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gacatttaacagatcaaaaatcaa 108 ||||||||| |||||||||||||| Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116
>dbj|AB037704.1| Clostridium butyricum bont/E gene for type E botulinum toxin, complete cds, strain:LCL 155 Length = 3835 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gacatttaacagatcaaaaatcaa 108 ||||||||| |||||||||||||| Sbjct: 3093 gacatttaatagatcaaaaatcaa 3116 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,211,547 Number of Sequences: 3902068 Number of extensions: 2211547 Number of successful extensions: 37834 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37755 Number of HSP's gapped (non-prelim): 79 length of query: 278 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 256 effective length of database: 17,147,199,772 effective search space: 4389683141632 effective search space used: 4389683141632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)