ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast64f02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK144477.1| Mus musculus adult male gall bladder cDNA, RIKEN full-length enriched library, clone:G630076E19 product:unclassifiable, full insert sequence Length = 809 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 178 agagccaccattactaccaccagcagcagca 208 |||||||||||||| |||||||||||||||| Sbjct: 260 agagccaccattaccaccaccagcagcagca 290
>emb|AL772393.11| Mouse DNA sequence from clone RP23-398D18 on chromosome 4, complete sequence Length = 207495 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 178 agagccaccattactaccaccagcagcagca 208 |||||||||||||| |||||||||||||||| Sbjct: 90825 agagccaccattaccaccaccagcagcagca 90855
>gb|AC137596.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0031H05, complete sequence Length = 141200 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 359 cgctgccgtcgtcctcgtcgttcacctcg 387 ||||||| ||||||||||||||||||||| Sbjct: 13714 cgctgccctcgtcctcgtcgttcacctcg 13686
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 359 cgctgccgtcgtcctcgtcgttcacctcg 387 ||||||| ||||||||||||||||||||| Sbjct: 21557088 cgctgccctcgtcctcgtcgttcacctcg 21557060
>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0489D11 Length = 150757 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 359 cgctgccgtcgtcctcgtcgttcacctcg 387 ||||||| ||||||||||||||||||||| Sbjct: 118698 cgctgccctcgtcctcgtcgttcacctcg 118670
>dbj|AK066658.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071N11, full insert sequence Length = 842 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 359 cgctgccgtcgtcctcgtcgttcacctcg 387 ||||||| ||||||||||||||||||||| Sbjct: 483 cgctgccctcgtcctcgtcgttcacctcg 455
>ref|XM_468657.1| Oryza sativa (japonica cultivar-group), mRNA Length = 861 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 352 tcgccctcgctgccgtcgtcctcgtcgt 379 ||||| |||||||||||||||||||||| Sbjct: 458 tcgccatcgctgccgtcgtcctcgtcgt 431
>gb|AC120529.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039N21, complete sequence Length = 151732 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Plus Query: 352 tcgccctcgctgccgtcgtcctcgtcgt 379 ||||| |||||||||||||||||||||| Sbjct: 9034 tcgccatcgctgccgtcgtcctcgtcgt 9061
>gb|AC092262.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C05 map C12819S, complete sequence Length = 113266 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Plus Query: 352 tcgccctcgctgccgtcgtcctcgtcgt 379 ||||| |||||||||||||||||||||| Sbjct: 103820 tcgccatcgctgccgtcgtcctcgtcgt 103847
>gb|AY004216.1| Mus musculus muclin (Crpd) gene, partial cds Length = 5460 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Minus Query: 189 tactaccaccagcagcagcaggag 212 |||||||||||||||||||||||| Sbjct: 1664 tactaccaccagcagcagcaggag 1641
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Plus Query: 352 tcgccctcgctgccgtcgtcctcgtcgt 379 ||||| |||||||||||||||||||||| Sbjct: 16866030 tcgccatcgctgccgtcgtcctcgtcgt 16866057 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 34186420 accaccagcagcagcaggag 34186439
>gb|AC087063.20| Mus musculus strain C57BL/6J clone rp23-20o47 map 7, complete sequence Length = 241381 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Minus Query: 189 tactaccaccagcagcagcaggag 212 |||||||||||||||||||||||| Sbjct: 144333 tactaccaccagcagcagcaggag 144310
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Plus Query: 352 tcgccctcgctgccgtcgtcctcgtcgt 379 ||||| |||||||||||||||||||||| Sbjct: 16859603 tcgccatcgctgccgtcgtcctcgtcgt 16859630 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 34276892 accaccagcagcagcaggag 34276911
>dbj|AK110543.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-B05, full insert sequence Length = 1114 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 352 tcgccctcgctgccgtcgtcctcgtcgt 379 ||||| |||||||||||||||||||||| Sbjct: 515 tcgccatcgctgccgtcgtcctcgtcgt 488
>gb|AC161285.2| Pan troglodytes BAC clone CH251-310B11 from chromosome 7, complete sequence Length = 171038 Score = 46.1 bits (23), Expect = 0.084 Identities = 26/27 (96%) Strand = Plus / Plus Query: 183 caccattactaccaccagcagcagcag 209 |||||| |||||||||||||||||||| Sbjct: 98634 caccatcactaccaccagcagcagcag 98660
>gb|AC142302.1| Pan troglodytes BAC clone RP43-128I16 from 7, complete sequence Length = 161986 Score = 46.1 bits (23), Expect = 0.084 Identities = 26/27 (96%) Strand = Plus / Minus Query: 183 caccattactaccaccagcagcagcag 209 |||||| |||||||||||||||||||| Sbjct: 49886 caccatcactaccaccagcagcagcag 49860
>gb|BT025183.1| Drosophila melanogaster IP15250 full insert cDNA Length = 1894 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 attactaccaccagcagcagcaggag 212 |||||||||| ||||||||||||||| Sbjct: 1867 attactaccaacagcagcagcaggag 1892
>emb|Z11723.1|DMDNABPMR D.melanogaster mRNA for DNA binding protein Length = 3587 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 attactaccaccagcagcagcaggag 212 |||||||||| ||||||||||||||| Sbjct: 1684 attactaccaacagcagcagcaggag 1709
>emb|X71626.1|DMTRAMT88 D.melanogaster tramtrack p88 mRNA Length = 3704 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 attactaccaccagcagcagcaggag 212 |||||||||| ||||||||||||||| Sbjct: 1789 attactaccaacagcagcagcaggag 1814
>ref|NM_170566.1| Drosophila melanogaster tramtrack CG1856-RE, transcript variant E (ttk), mRNA Length = 3883 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 attactaccaccagcagcagcaggag 212 |||||||||| ||||||||||||||| Sbjct: 1978 attactaccaacagcagcagcaggag 2003
>ref|NM_170565.1| Drosophila melanogaster tramtrack CG1856-RB, transcript variant B (ttk), mRNA Length = 3820 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 attactaccaccagcagcagcaggag 212 |||||||||| ||||||||||||||| Sbjct: 1915 attactaccaacagcagcagcaggag 1940
>ref|NM_170564.1| Drosophila melanogaster tramtrack CG1856-RA, transcript variant A (ttk), mRNA Length = 3905 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 attactaccaccagcagcagcaggag 212 |||||||||| ||||||||||||||| Sbjct: 2000 attactaccaacagcagcagcaggag 2025
>gb|AC008310.5|AC008310 Drosophila melanogaster, chromosome 3R, region 100C-100D, BAC clone BACR16C04, complete sequence Length = 159528 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 attactaccaccagcagcagcaggag 212 |||||||||| ||||||||||||||| Sbjct: 154057 attactaccaacagcagcagcaggag 154082
>gb|AC007469.7|AC007469 Drosophila melanogaster, chromosome 3R, region 100D1-100F2, BAC clone BACR48C22, complete sequence Length = 181446 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 attactaccaccagcagcagcaggag 212 |||||||||| ||||||||||||||| Sbjct: 103692 attactaccaacagcagcagcaggag 103717
>gb|AE003779.2| Drosophila melanogaster chromosome 3R, section 117 of 118 of the complete sequence Length = 232050 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 attactaccaccagcagcagcaggag 212 |||||||||| ||||||||||||||| Sbjct: 142964 attactaccaacagcagcagcaggag 142989
>gb|AF527616.1| Zea mays nucleasome/chromatin assembly factor D protein NFD101 (nfd101) mRNA, complete cds Length = 715 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 tcgtcctcgtcgttcacctcg 387 ||||||||||||||||||||| Sbjct: 430 tcgtcctcgtcgttcacctcg 410
>ref|NM_183470.1| Oryza sativa (japonica cultivar-group), mRNA Length = 963 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 tactaccaccagcagcagcag 209 ||||||||||||||||||||| Sbjct: 799 tactaccaccagcagcagcag 819
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01, complete sequence Length = 126532 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 356 cctcgctgccgtcgtcctcgtcgtt 380 |||||||||||||||| |||||||| Sbjct: 5000 cctcgctgccgtcgtcatcgtcgtt 4976
>emb|AL359844.15| Human DNA sequence from clone RP11-314J18 on chromosome 10 Contains the gene for a novel protein (FLJ25162), the GU2 gene for nucleolar protein GU2 (GUB, MGC3199, RH-II/GuB), the DDX21 gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 21 (GUA, GURDB, RH-II/GU, RH-II/GuA), the gene for a novel protein (DKFZP586B0923)(KIAA1279), an endothelial-derived gene 1 (EG1)(EG-1, DKFZP434N185) pseudogene, an actin, beta (ACTB) pseudogene and three CpG islands, complete sequence Length = 171364 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 221 agagagggagggactaccaaggagc 245 ||||||||||||||||| ||||||| Sbjct: 136416 agagagggagggactacaaaggagc 136392
>emb|Y08807.1|ZMHMGD1 Z.mays mRNA for HMG protein Length = 731 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 tcgtcctcgtcgttcacctcg 387 ||||||||||||||||||||| Sbjct: 404 tcgtcctcgtcgttcacctcg 384
>gb|AF440221.1|AF440221 Zea mays cultivar Ohio43 HMG-like nucleosome/chromatin assembly factor D (nfd101) mRNA, complete cds Length = 781 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 tcgtcctcgtcgttcacctcg 387 ||||||||||||||||||||| Sbjct: 443 tcgtcctcgtcgttcacctcg 423
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 356 cctcgctgccgtcgtcctcgtcgtt 380 |||||||||||||||| |||||||| Sbjct: 21885786 cctcgctgccgtcgtcatcgtcgtt 21885762
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 tactaccaccagcagcagcag 209 ||||||||||||||||||||| Sbjct: 241813 tactaccaccagcagcagcag 241833
>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436E04 Length = 144644 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 tactaccaccagcagcagcag 209 ||||||||||||||||||||| Sbjct: 83483 tactaccaccagcagcagcag 83503
>emb|BX679675.28| Zebrafish DNA sequence from clone CH211-37L23 in linkage group 17, complete sequence Length = 119154 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 actggcaaacagagaagcatc 302 ||||||||||||||||||||| Sbjct: 91578 actggcaaacagagaagcatc 91558
>dbj|AK063748.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-G07, full insert sequence Length = 647 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 356 cctcgctgccgtcgtcctcgtcgtt 380 |||||||||||||||| |||||||| Sbjct: 242 cctcgctgccgtcgtcatcgtcgtt 218
>gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complete sequence Length = 192562 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 accattactaccaccagcagcagca 208 ||||| ||||||||||||||||||| Sbjct: 79948 accatcactaccaccagcagcagca 79972
>gb|AC110893.13| Mus musculus chromosome 3, clone RP24-141D20, complete sequence Length = 164857 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 161278 ccaccatcaccaccaccagcagcagcag 161251
>gb|AC110544.13| Mus musculus chromosome 3, clone RP23-112A11, complete sequence Length = 201027 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 190505 ccaccatcaccaccaccagcagcagcag 190532
>gb|AC111034.11| Mus musculus chromosome 8, clone RP23-202K1, complete sequence Length = 200303 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 94127 actaccaccagcagcagcag 94108
>gb|AC165149.5| Mus musculus BAC clone RP24-114C10 from chromosome 13, complete sequence Length = 191162 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 144402 ccaccatcaccaccaccagcagcagcag 144375
>ref|XM_474375.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 390 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 282 accaccagcagcagcaggag 263
>ref|XM_474100.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 350 cgtcgccctcgctgccgtcgtcctcgtc 377 ||||| |||||||||||||||| ||||| Sbjct: 365 cgtcgtcctcgctgccgtcgtcgtcgtc 392
>ref|XM_470146.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2382 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 437 accaccagcagcagcaggag 456
>gb|AC159420.1| Trypanosoma brucei chromosome 8 clone RPCI93-26A17, complete sequence Length = 142479 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 100544 accaccagcagcagcaggag 100563
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 787835 accaccagcagcagcaggag 787854
>gb|AC129332.6| Mus musculus BAC clone RP23-91I19 from chromosome 9, complete sequence Length = 219117 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 57775 ccaccatgacaaccaccagcagcagcag 57748
>gb|AC134871.3| Mus musculus BAC clone RP23-183L19 from chromosome 3, complete sequence Length = 193373 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 189580 actaccaccagcagcagcag 189599
>gb|BC019376.1| Mus musculus hepatocyte growth factor activator, mRNA (cDNA clone MGC:30305 IMAGE:5134851), complete cds Length = 2067 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 92 accaccagcagcagcaggag 73
>ref|XM_955235.1| Neurospora crassa OR74A hypothetical protein (NCU07063.1) partial mRNA Length = 1656 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 54 accaccagcagcagcaggag 73
>ref|XM_327348.1| Neurospora crassa OR74A hypothetical protein (NCU07063.1) partial mRNA Length = 1656 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 54 accaccagcagcagcaggag 73
>gb|AC124430.3| Mus musculus BAC clone RP24-239O11 from chromosome 18, complete sequence Length = 169834 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagcagcagcag 209 |||| ||||| ||||||||||||||||| Sbjct: 79899 ccactattaccaccaccagcagcagcag 79926
>ref|XM_657960.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5448.2), mRNA Length = 2418 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 671 actaccaccagcagcagcag 690
>gb|AC130713.4| Mus musculus BAC clone RP23-316K10 from chromosome 15, complete sequence Length = 192020 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 tactaccaccagcagcagca 208 |||||||||||||||||||| Sbjct: 174562 tactaccaccagcagcagca 174581
>ref|NM_146153.3| Mus musculus thyroid hormone receptor associated protein 3 (Thrap3), mRNA Length = 4350 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 3253 accaccagcagcagcaggag 3234
>ref|XM_455518.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F09647g predicted mRNA Length = 1815 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 catcatcgatcggtgacactggca 288 ||||||||||| |||||||||||| Sbjct: 286 catcatcgatctgtgacactggca 263
>gb|AC151903.3| Mus musculus BAC clone RP23-216I7 from chromosome 14, complete sequence Length = 232727 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ccaccattactaccaccagc 201 |||||||||||||||||||| Sbjct: 84642 ccaccattactaccaccagc 84623
>gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, complete sequence Length = 212083 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 212014 actaccaccagcagcagcag 211995
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagc 201 |||||||||||||||||||| Sbjct: 587542 ccaccattactaccaccagc 587561
>gb|AC165409.3| Mus musculus chromosome 18, clone RP23-90F15, complete sequence Length = 198735 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 182 ccaccattactaccaccagcagcagcag 209 |||||| ||| ||||||||||||||||| Sbjct: 151128 ccaccactacgaccaccagcagcagcag 151101
>gb|AC152940.2| Mus musculus BAC clone RP23-264B6 from chromosome 15, complete sequence Length = 224704 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tactaccaccagcagcagca 208 |||||||||||||||||||| Sbjct: 146539 tactaccaccagcagcagca 146520
>gb|AC131110.3| Mus musculus BAC clone RP23-387J23 from chromosome 6, complete sequence Length = 205463 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 177512 actaccaccagcagcagcag 177531
>ref|XM_973340.1| PREDICTED: Mus musculus hypothetical protein LOC669145 (LOC669145), mRNA Length = 498 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 50 ccaccatcaccaccaccagcagcagcag 77
>ref|XR_002399.1| PREDICTED: Mus musculus similar to thyroid hormone receptor associated protein 3 (LOC669162), mRNA Length = 3407 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 2322 accaccagcagcagcaggag 2303
>gb|BC064786.1| Mus musculus cDNA clone IMAGE:30063083, with apparent retained intron Length = 2036 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 268 actaccaccagcagcagcag 287
>ref|XM_818871.1| Trypanosoma brucei TREU927 clone RPCI93-26A17 hypothetical protein (Tb927.8.2660) partial mRNA Length = 5760 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 2771 accaccagcagcagcaggag 2790
>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and 01G10 from library NotreDame1 of Anopheles gambiae (African malaria mosquito) strain PEST Length = 447895 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 90582 actaccaccagcagcagcag 90563
>ref|XM_813634.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511725.160) partial mRNA Length = 4899 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 accattactaccaccagcag 203 |||||||||||||||||||| Sbjct: 3078 accattactaccaccagcag 3059
>emb|AL929011.11| Mouse DNA sequence from clone RP23-55O12 on chromosome 2, complete sequence Length = 128341 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 9158 ccaccatcaccaccaccagcagcagcag 9131
>gb|AC125081.3| Mus musculus BAC clone RP24-89D17 from chromosome 3, complete sequence Length = 220895 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 14483 actaccaccagcagcagcag 14502
>gb|AC129019.4| Mus musculus BAC clone RP24-541L1 from chromosome 13, complete sequence Length = 190792 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 159052 ccaccatcaccaccaccagcagcagcag 159079
>gb|AC126447.3| Mus musculus BAC clone RP23-352G19 from chromosome 5, complete sequence Length = 196904 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 95349 accaccagcagcagcaggag 95368
>gb|BC040346.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone IMAGE:3498255), with apparent retained intron Length = 4283 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 3184 accaccagcagcagcaggag 3165
>ref|XM_806600.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein (MASP) (Tc00.1047053506781.39) partial mRNA Length = 990 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 432 accaccagcagcagcaggag 413
>emb|Z81033.1|CEC03C11 Caenorhabditis elegans Cosmid C03C11, complete sequence Length = 19170 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 15776 accaccagcagcagcaggag 15757
>gb|AC122479.3| Mus musculus BAC clone RP24-344E5 from chromosome 14, complete sequence Length = 185254 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagc 201 |||||||||||||||||||| Sbjct: 10377 ccaccattactaccaccagc 10396
>ref|XM_816924.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053508221.650) partial mRNA Length = 2973 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 52 accaccagcagcagcaggag 33
>ref|XM_814443.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein (MASP) (Tc00.1047053510625.150) partial mRNA Length = 912 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 342 accaccagcagcagcaggag 323
>ref|XM_814446.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein (MASP) (Tc00.1047053510625.19) partial mRNA Length = 960 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 402 accaccagcagcagcaggag 383
>gb|AY170467.1| Leishmania mexicana mexicana delta adpatin gene, complete cds Length = 5118 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 tcgctgccgtcgtcctcgtc 377 |||||||||||||||||||| Sbjct: 3523 tcgctgccgtcgtcctcgtc 3504
>ref|XM_760824.1| Theileria parva strain Muguga chromosome 1 serine hydroxymethyltransferase (TP01_0390) partial mRNA Length = 1512 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 agcaggagagcctgaaagag 224 |||||||||||||||||||| Sbjct: 489 agcaggagagcctgaaagag 470
>gb|AC103933.7| Mus musculus chromosome 18, clone RP23-317G9, complete sequence Length = 198626 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 182 ccaccattactaccaccagcagcagcag 209 |||||| ||| ||||||||||||||||| Sbjct: 114139 ccaccactacgaccaccagcagcagcag 114112
>ref|NM_017149.1| Rattus norvegicus mesenchyme homeobox 2 (Meox2), mRNA Length = 2244 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 418 ccaccatcaccaccaccagcagcagcag 445
>gb|AC153656.4| Mus musculus BAC clone RP23-428O19 from chromosome 1, complete sequence Length = 196584 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 44152 accaccagcagcagcaggag 44133
>gb|AC105325.11| Mus musculus chromosome 1, clone RP24-455G23, complete sequence Length = 139801 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 126246 actaccaccagcagcagcag 126265
>emb|AJ011768.1|SSC011768 Sus scrofa mRNA for neuron-derived orphan receptor-1 beta Length = 1606 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 331 ccaccatcaccaccaccagcagcagcag 358
>emb|AJ011767.1|SSC011767 Sus scrofa mRNA for neuron-derived orphan receptor-1 alfa transcription factor Length = 5115 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 429 ccaccatcaccaccaccagcagcagcag 456
>gb|AC115917.10| Mus musculus chromosome 1, clone RP24-488H6, complete sequence Length = 186588 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 23084 actaccaccagcagcagcag 23103
>emb|AL772384.9| Human DNA sequence from clone RP11-451O13 on chromosome 1 Contains the 5' end of a variant of the CD5L gene for CD5 antigen-like (scavenger receptor cysteine rich family), a pseudogene similar to part of a immunoglobulin receptor-like protein and the 5' end of a novel gene, complete sequence Length = 68148 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 tccagagaccaccctccccc 334 |||||||||||||||||||| Sbjct: 55422 tccagagaccaccctccccc 55403
>emb|AL772392.4| Human DNA sequence from clone RP11-450P7 on chromosome X Contains the 3' end of the CNK2 gene for connector enhancer of KSR2 (KIAA0902), gene FLJ34960, 3' end of the SMPX gene for X-linked small muscle protein and a CpG island, complete sequence Length = 124186 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 117398 actaccaccagcagcagcag 117417
>gb|BC048391.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone IMAGE:6314114), complete cds Length = 1715 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 619 accaccagcagcagcaggag 600
>emb|AL121975.9|HSJ422B11 Human DNA sequence from clone RP3-422B11 on chromosome 6p11.2-12.3 Contains part of the PRIM2A gene for primase polypeptide 2A (58kD), complete sequence Length = 129629 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cagagaccaccctccccctg 336 |||||||||||||||||||| Sbjct: 118972 cagagaccaccctccccctg 118953
>gb|AF525766.1| Trypanosoma cruzi unknown genes Length = 30095 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 11075 accaccagcagcagcaggag 11094
>emb|Z17223.1|RNGAXMR R.norvegicus mRNA encoding Gax protein Length = 2244 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 418 ccaccatcaccaccaccagcagcagcag 445
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 catcatcgatcggtgacactggca 288 ||||||||||| |||||||||||| Sbjct: 887573 catcatcgatctgtgacactggca 887550
>gb|AC160997.5| Mus musculus BAC clone RP23-68E4 from chromosome 9, complete sequence Length = 179142 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 123060 accaccagcagcagcaggag 123041
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 72033 accaccagcagcagcaggag 72014
>emb|AL606445.2|OSJN00018 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070O11, complete sequence Length = 134231 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 cgtcgccctcgctgccgtcgtcctcgtc 377 ||||| |||||||||||||||| ||||| Sbjct: 29274 cgtcgtcctcgctgccgtcgtcgtcgtc 29247
>gb|AC160340.2| Mus musculus BAC clone RP23-436E24 from chromosome 12, complete sequence Length = 209911 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 23870 actaccaccagcagcagcag 23889
>emb|AL837505.21| Mouse DNA sequence from clone RP23-181N6 on chromosome 4, complete sequence Length = 186045 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 8171 ccaccatgaccaccaccagcagcagcag 8198
>gb|AC153634.3| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190237 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 106056 actaccaccagcagcagcag 106037
>gb|BC092239.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone MGC:116673 IMAGE:30659321), complete cds Length = 4266 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 3169 accaccagcagcagcaggag 3150
>gb|BC033472.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone IMAGE:4947317), with apparent retained intron Length = 1955 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 850 accaccagcagcagcaggag 831
>dbj|AK144554.1| Mus musculus adult male gall bladder cDNA, RIKEN full-length enriched library, clone:G630096L04 product:hepatocyte growth factor activator, full insert sequence Length = 2046 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 99 accaccagcagcagcaggag 80
>gb|AC036154.17| Homo sapiens chromosome 17, clone RP11-346N15, complete sequence Length = 55100 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 53765 actaccaccagcagcagcag 53746
>dbj|AK149522.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730029P22 product:hepatocyte growth factor activator, full insert sequence Length = 2039 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 91 accaccagcagcagcaggag 72
>gb|AC159633.2| Mus musculus BAC clone RP24-159L15 from chromosome 12, complete sequence Length = 188757 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 162593 actaccaccagcagcagcag 162612
>dbj|AK169989.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630006N23 product:hepatocyte growth factor activator, full insert sequence Length = 2071 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 123 accaccagcagcagcaggag 104
>dbj|AK165433.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F520015D12 product:hepatocyte growth factor activator, full insert sequence Length = 2477 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 104 accaccagcagcagcaggag 85
>dbj|AK169008.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920073L08 product:thyroid hormone receptor associated protein 3, full insert sequence Length = 1764 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 692 accaccagcagcagcaggag 673
>dbj|AK016523.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932414N04 product:hypothetical protein, full insert sequence Length = 3644 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 caccattactaccaccagcagcag 206 |||||| ||||||||||||||||| Sbjct: 1097 caccatcactaccaccagcagcag 1074
>dbj|AK046010.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230333E16 product:THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN COMPLEX COMPONENT TRAP150 homolog [Homo sapiens], full insert sequence Length = 2659 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 1586 accaccagcagcagcaggag 1567
>ref|NM_060244.2| Caenorhabditis elegans C03C11.1 (C03C11.1) mRNA, complete cds Length = 604 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 358 accaccagcagcagcaggag 339
>gb|AY973543.1| Hyaloperonospora parasitica isolate Emoy2 clone BAC 9B13 and BAC 4C4, complete sequence Length = 120624 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 75577 actaccaccagcagcagcag 75596
>dbj|AK007987.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length enriched library, clone:1810074F22 product:hepatocyte growth factor activator, full insert sequence Length = 2073 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 125 accaccagcagcagcaggag 106
>dbj|AK075718.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300019B09 product:hepatocyte growth factor activator, full insert sequence Length = 1985 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 36 accaccagcagcagcaggag 17
>gb|AF224724.1|AF224724 Mus musculus hepatocyte growth factor activator HGFA mRNA, complete cds Length = 2063 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 87 accaccagcagcagcaggag 68
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 34766473 accaccagcagcagcaggag 34766454 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 cgtcgccctcgctgccgtcgtcctcgtc 377 ||||| |||||||||||||||| ||||| Sbjct: 32886425 cgtcgtcctcgctgccgtcgtcgtcgtc 32886398
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cgctgccgtcgtcctcgtcg 378 |||||||||||||||||||| Sbjct: 9208699 cgctgccgtcgtcctcgtcg 9208680
>gb|AC132874.10| Mus musculus chromosome 7, clone RP24-215K5, complete sequence Length = 154316 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 20723 accaccagcagcagcaggag 20742
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence Length = 163828 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 150232 accaccagcagcagcaggag 150251
>gb|AC012076.5| Homo sapiens BAC clone RP11-497D24 from 2, complete sequence Length = 212275 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 174499 actaccaccagcagcagcag 174480
>gb|AC005207.2| Homo sapiens chromosome 17, clone RP5-1081P3, complete sequence Length = 59412 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 37483 actaccaccagcagcagcag 37502
>ref|NM_214247.1| Sus scrofa neuron-derived orphan receptor-1 alfa (NOR-1), mRNA Length = 5115 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagcagcagcag 209 ||||||| || ||||||||||||||||| Sbjct: 429 ccaccatcaccaccaccagcagcagcag 456
>gb|AF099017.1|AF099017 Mus musculus hepatocyte growth factor activator (HGFA) mRNA, complete cds Length = 2035 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 87 accaccagcagcagcaggag 68
>emb|AL731780.6| Mouse DNA sequence from clone RP23-365D10 on chromosome 4, complete sequence Length = 78870 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 66983 accaccagcagcagcaggag 67002
>emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on chromosome 2, complete sequence Length = 132427 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 55132 actaccaccagcagcagcag 55113
>gb|AC158181.2| Selaginella moellendorffii clone JGIASXY-5D1, complete sequence Length = 34893 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 caccagcagcagcaggagag 214 |||||||||||||||||||| Sbjct: 15010 caccagcagcagcaggagag 14991
>emb|AL672282.9| Mouse DNA sequence from clone RP23-448K19 on chromosome X, complete sequence Length = 167107 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 71413 actaccaccagcagcagcag 71432
>gb|AC153961.2| Mus musculus 10 BAC RP24-330I16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 159792 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 49137 actaccaccagcagcagcag 49156
>dbj|AK106352.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A01, full insert sequence Length = 2036 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cgctgccgtcgtcctcgtcg 378 |||||||||||||||||||| Sbjct: 74 cgctgccgtcgtcctcgtcg 55
>dbj|AK067139.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096O17, full insert sequence Length = 885 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 350 cgtcgccctcgctgccgtcgtcctcgtc 377 ||||| |||||||||||||||| ||||| Sbjct: 511 cgtcgtcctcgctgccgtcgtcgtcgtc 538
>gb|AC152454.5| Mus musculus BAC clone RP24-100N16 from 18, complete sequence Length = 224577 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagcagcagcag 209 |||| ||||| ||||||||||||||||| Sbjct: 191070 ccactattaccaccaccagcagcagcag 191097
>gb|BC091635.1| Xenopus laevis cDNA clone MGC:98683 IMAGE:7200779, complete cds Length = 4541 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 3428 accaccagcagcagcaggag 3409
>gb|AY104975.1| Zea mays PCO123089 mRNA sequence Length = 647 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 291 actaccaccagcagcagcag 310
>gb|AC155284.7| Mus musculus 6 BAC RP23-241L3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205924 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 139973 actaccaccagcagcagcag 139954
>emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811D08, complete sequence Length = 123337 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 cgtcgccctcgctgccgtcgtcctcgtc 377 ||||| |||||||||||||||| ||||| Sbjct: 9505 cgtcgtcctcgctgccgtcgtcgtcgtc 9478
>emb|AL732341.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0213E10, complete sequence Length = 26755 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 18338 accaccagcagcagcaggag 18319
>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete sequence Length = 110682 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 2461 accaccagcagcagcaggag 2442
>gb|U73508.1|U73508 Homo sapiens cosmid clone U112E8 from Xp22.1-22.2, complete sequence Length = 36503 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 20846 actaccaccagcagcagcag 20865
>gb|AC006257.1|AC006257 Homo sapiens, clone hRPK.11_A_1, complete sequence Length = 175818 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cagagaccaccctccccctg 336 |||||||||||||||||||| Sbjct: 11657 cagagaccaccctccccctg 11676
>emb|BX293546.8| Mouse DNA sequence from clone RP23-459M13 on chromosome 2, complete sequence Length = 71049 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 caccattactaccaccagcagcag 206 |||||| ||||||||||||||||| Sbjct: 36611 caccatcactaccaccagcagcag 36588
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cgctgccgtcgtcctcgtcg 378 |||||||||||||||||||| Sbjct: 9208584 cgctgccgtcgtcctcgtcg 9208565
>emb|AL928867.9| Mouse DNA sequence from clone RP23-468L22 on chromosome 2, complete sequence Length = 111535 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 94174 actaccaccagcagcagcag 94155
>emb|AL731760.2|CNS07YPJ Oryza sativa chromosome 12, . BAC OJ1005_C11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104533 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cgctgccgtcgtcctcgtcg 378 |||||||||||||||||||| Sbjct: 64589 cgctgccgtcgtcctcgtcg 64570
>gb|AC149603.5| Mus musculus BAC clone RP23-479L9 from 7, complete sequence Length = 177637 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 172359 accaccagcagcagcaggag 172340
>gb|AC124344.6| Mus musculus BAC clone RP24-448A7 from 3, complete sequence Length = 219818 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 tgaaagagagggagggacta 236 |||||||||||||||||||| Sbjct: 55248 tgaaagagagggagggacta 55267
>gb|AC132224.3| Mus musculus BAC clone RP24-554P12 from 1, complete sequence Length = 154996 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 37661 accaccagcagcagcaggag 37680
>ref|NM_019447.1| Mus musculus hepatocyte growth factor activator (Hgfac), mRNA Length = 2063 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 accaccagcagcagcaggag 212 |||||||||||||||||||| Sbjct: 87 accaccagcagcagcaggag 68
>ref|NM_183113.1| Mus musculus RIKEN cDNA 4932414N04 gene (4932414N04Rik), mRNA Length = 3644 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 caccattactaccaccagcagcag 206 |||||| ||||||||||||||||| Sbjct: 1097 caccatcactaccaccagcagcag 1074
>gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, complete sequence Length = 208713 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 actaccaccagcagcagcag 209 |||||||||||||||||||| Sbjct: 124968 actaccaccagcagcagcag 124987
>emb|AL831742.6| Mouse DNA sequence from clone RP23-11F9 on chromosome 2, complete sequence Length = 230800 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 ccaccattactaccaccagcagcagcag 209 |||||| ||| ||||||||||||||||| Sbjct: 24168 ccaccagtaccaccaccagcagcagcag 24195 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,755,751 Number of Sequences: 3902068 Number of extensions: 3755751 Number of successful extensions: 100897 Number of sequences better than 10.0: 152 Number of HSP's better than 10.0 without gapping: 154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100167 Number of HSP's gapped (non-prelim): 725 length of query: 387 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 365 effective length of database: 17,147,199,772 effective search space: 6258727916780 effective search space used: 6258727916780 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
