ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast64d06 |
|---|---|
| Clone Library Name | barley_pub |
>AAEB_YERPS (Q665H2) p-hydroxybenzoic acid efflux pump subunit aaeB (pHBA| efflux pump protein B) Length = 651 Score = 30.4 bits (67), Expect = 1.1 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Frame = -2 Query: 312 GTAVCAIKGIVLSFYSIF--LLPCDRCCSTVTWPGSK*FVWSVCTFLACLDTLASLHFFG 139 GT + I G+V+ +I +L CC W G +CT+++ L + + + FG Sbjct: 71 GTFIGCIGGLVIIVLTIRAPVLTLMLCC---LWAG-------ICTWISSLVRVENSYAFG 120 Query: 138 LFGYTSLAGLTLNQLRPLV 82 L GYT+L + PL+ Sbjct: 121 LAGYTALIIIVTTGETPLL 139
>AAEB_YERPE (Q8ZAU8) p-hydroxybenzoic acid efflux pump subunit aaeB (pHBA| efflux pump protein B) Length = 651 Score = 30.4 bits (67), Expect = 1.1 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Frame = -2 Query: 312 GTAVCAIKGIVLSFYSIF--LLPCDRCCSTVTWPGSK*FVWSVCTFLACLDTLASLHFFG 139 GT + I G+V+ +I +L CC W G +CT+++ L + + + FG Sbjct: 71 GTFIGCIGGLVIIVLTIRAPVLTLMLCC---LWAG-------ICTWISSLVRVENSYAFG 120 Query: 138 LFGYTSLAGLTLNQLRPLV 82 L GYT+L + PL+ Sbjct: 121 LAGYTALIIIVTTGETPLL 139
>AAEB_ERWCT (Q6DAH4) p-hydroxybenzoic acid efflux pump subunit aaeB (pHBA| efflux pump protein B) Length = 662 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Frame = -2 Query: 201 VWS-VCTFLACLDTLASLHFFGLFGYTSLAGLTLNQLRPLV 82 +W+ +CT+++ L + + + FGL GYT+L + Q PL+ Sbjct: 110 IWAGLCTWVSSLVKVENAYIFGLAGYTALIIIVSTQGTPLL 150
>PHS_RHOS4 (Q3IZF4) Putative pterin-4-alpha-carbinolamine dehydratase (EC| 4.2.1.96) (PHS) (4-alpha-hydroxy-tetrahydropterin dehydratase) (Pterin carbinolamine dehydratase) (PCD) Length = 92 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = -1 Query: 184 FFGLFGYTSLVALFWPVWIH*PRWTNSEPAPTFGGVSMIELAQTFGGV 41 F FG+ + VAL+ W H P W+NS +G V + + GG+ Sbjct: 33 FVAAFGFMTRVALWAEKWNHHPDWSNS-----YGTVEVSLTSHDAGGL 75
>AT8A1_MOUSE (P70704) Probable phospholipid-transporting ATPase IA (EC 3.6.3.1)| (Chromaffin granule ATPase II) (ATPase class I type 8A member 1) Length = 1149 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = +2 Query: 143 KKCNEASVSKQAKKVQTDQTNYLEPGHVTVLQHLSHGKRKIL*KLNTMPLIAHTAVP 313 KKC A V+ D+ + +P + LQ+ +H I+ + TM + HTAVP Sbjct: 422 KKCTIAGVAYGQSSQFGDEKTFNDPSLLDNLQN-NHPTAPIICEFLTMMAVCHTAVP 477
>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/60 (30%), Positives = 32/60 (53%) Frame = +2 Query: 107 VSPARLVYPNRPKKCNEASVSKQAKKVQTDQTNYLEPGHVTVLQHLSHGKRKIL*KLNTM 286 +S + L Y N+ S S++AKKV D+T L+ + +VL+ + K+ +L T+ Sbjct: 2467 LSNSLLRYHNKVYCTTSKSASQRAKKVTFDRTQVLDAHYDSVLKDIKLAASKVSARLLTL 2526
>IF2_DEHSC (Q3ZXU3) Translation initiation factor IF-2| Length = 593 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +2 Query: 146 KCNEASVSKQAKKVQTDQTNY-LEPGHVTVLQHLSHGKRKIL 268 K + S +K+A + +N+ L P VT++ H+ HGK ++L Sbjct: 79 KILKKSAAKKASPAKEKLSNFPLRPPVVTIMGHVDHGKTRLL 120
>LNT_NEIMA (Q9JVA8) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP| N-acyltransferase) Length = 512 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -1 Query: 88 FGGVSMIELAQTFGGVWMI 32 FGG+ M+ LA F GVW++ Sbjct: 168 FGGIHMVTLATAFLGVWLV 186
>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2| Length = 954 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = +2 Query: 164 VSKQAKKVQTDQTNYLEPGHVTVLQHLSHGKRKIL*KLNTMPLIAHTA 307 ++ +++Q D+ P VTV+ H+ HGK ++L + +IA A Sbjct: 432 INLDEEELQDDEDLKPRPPVVTVMGHVDHGKTRLLDTIRKTNVIAREA 479
>IF2_LEPIN (Q8F7K1) Translation initiation factor IF-2| Length = 880 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +2 Query: 155 EASVSKQAKKVQTDQTNYLEPGHVTVLQHLSHGKRKIL 268 E ++ ++ K Q D N P VT++ H+ HGK K+L Sbjct: 359 EETIIEEEKDNQEDYIN--RPPVVTIMGHVDHGKTKLL 394
>IF2_LEPIC (Q72NX3) Translation initiation factor IF-2| Length = 891 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +2 Query: 155 EASVSKQAKKVQTDQTNYLEPGHVTVLQHLSHGKRKIL 268 E ++ ++ K Q D N P VT++ H+ HGK K+L Sbjct: 370 EETIIEEEKDNQEDYIN--RPPVVTIMGHVDHGKTKLL 405
>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2| Length = 917 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Frame = +2 Query: 128 YPNRPKKCNEASVSKQAKKVQTDQTNYLEPGH--VTVLQHLSHGKRKIL*KLNTMPLIAH 301 + +R K+ +E+ V + V+ D + L+P VTV+ H+ HGK +L L T + A Sbjct: 388 FGHRIKRVSESDVEIGIEGVE-DNADDLKPRAPVVTVMGHVDHGKTSLLDALRTTDVAAS 446 Query: 302 TA 307 A Sbjct: 447 EA 448
>AAEB_SHIFL (Q83JE2) p-hydroxybenzoic acid efflux pump subunit aaeB (pHBA| efflux pump protein B) Length = 655 Score = 28.1 bits (61), Expect = 5.3 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Frame = -2 Query: 312 GTAVCAIKGIVLSFYSIF--LLPCDRCCSTVTWPGSK*FVWSVCTFLACLDTLASLHFFG 139 GT + I G+V+ I LL CC W G CT+++ L + + + +G Sbjct: 73 GTFIGCIAGLVIIIAMIRAPLLMILVCC---IWAG-------FCTWISSLVRIENSYAWG 122 Query: 138 LFGYTSLAGLTLNQLRPLV 82 L GYT+L + Q PL+ Sbjct: 123 LAGYTALIIVITIQPEPLL 141
>AAEB_SALTY (Q8ZLP5) p-hydroxybenzoic acid efflux pump subunit aaeB (pHBA| efflux pump protein B) Length = 655 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -2 Query: 285 IVLSFYSIFLLPCDRCCSTVTWPGSK*FVWSVCTFLACLDTLASLHFFGLFGYTSLAGLT 106 I++S LL CC W G CT+++ L + + + +GL GYT+L + Sbjct: 84 IIISMIRAPLLMILVCC---VWAG-------FCTWISSLVRIENSYAWGLSGYTALIIVI 133 Query: 105 LNQLRPLV 82 Q PL+ Sbjct: 134 TIQTEPLL 141
>AAEB_SALTI (Q8Z3D8) p-hydroxybenzoic acid efflux pump subunit aaeB (pHBA| efflux pump protein B) Length = 655 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -2 Query: 285 IVLSFYSIFLLPCDRCCSTVTWPGSK*FVWSVCTFLACLDTLASLHFFGLFGYTSLAGLT 106 I++S LL CC W G CT+++ L + + + +GL GYT+L + Sbjct: 84 IIISMIRAPLLMILVCC---VWAG-------FCTWISSLVRIENSYAWGLSGYTALIIVI 133 Query: 105 LNQLRPLV 82 Q PL+ Sbjct: 134 TIQTEPLL 141
>AAEB_SALCH (Q57JA4) p-hydroxybenzoic acid efflux pump subunit aaeB (pHBA| efflux pump protein B) Length = 655 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -2 Query: 285 IVLSFYSIFLLPCDRCCSTVTWPGSK*FVWSVCTFLACLDTLASLHFFGLFGYTSLAGLT 106 I++S LL CC W G CT+++ L + + + +GL GYT+L + Sbjct: 84 IIISMIRAPLLMILVCC---VWAG-------FCTWISSLVRIENSYAWGLSGYTALIIVI 133 Query: 105 LNQLRPLV 82 Q PL+ Sbjct: 134 TIQTEPLL 141
>AAEB_ECOLI (P46481) p-hydroxybenzoic acid efflux pump subunit aaeB (pHBA| efflux pump protein B) Length = 655 Score = 28.1 bits (61), Expect = 5.3 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Frame = -2 Query: 312 GTAVCAIKGIVLSFYSIF--LLPCDRCCSTVTWPGSK*FVWSVCTFLACLDTLASLHFFG 139 GT + I G+V+ I LL CC W G CT+++ L + + + +G Sbjct: 73 GTFIGCIAGLVIIIAMIRAPLLMILVCC---IWAG-------FCTWISSLVRIENSYAWG 122 Query: 138 LFGYTSLAGLTLNQLRPLV 82 L GYT+L + Q PL+ Sbjct: 123 LAGYTALIIVITIQPEPLL 141
>AAEB_ECOL6 (Q8FD51) p-hydroxybenzoic acid efflux pump subunit aaeB (pHBA| efflux pump protein B) Length = 655 Score = 28.1 bits (61), Expect = 5.3 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Frame = -2 Query: 312 GTAVCAIKGIVLSFYSIF--LLPCDRCCSTVTWPGSK*FVWSVCTFLACLDTLASLHFFG 139 GT + I G+V+ I LL CC W G CT+++ L + + + +G Sbjct: 73 GTFIGCIAGLVIIIAMIRAPLLMILVCC---IWAG-------FCTWISSLVRIENSYAWG 122 Query: 138 LFGYTSLAGLTLNQLRPLV 82 L GYT+L + Q PL+ Sbjct: 123 LAGYTALIIVITIQPEPLL 141
>AAEB_ECO57 (Q8X9E6) p-hydroxybenzoic acid efflux pump subunit aaeB (pHBA| efflux pump protein B) Length = 655 Score = 28.1 bits (61), Expect = 5.3 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Frame = -2 Query: 312 GTAVCAIKGIVLSFYSIF--LLPCDRCCSTVTWPGSK*FVWSVCTFLACLDTLASLHFFG 139 GT + I G+V+ I LL CC W G CT+++ L + + + +G Sbjct: 73 GTFIGCIAGLVIIIAMIRAPLLMILVCC---IWAG-------FCTWISSLVRIENSYAWG 122 Query: 138 LFGYTSLAGLTLNQLRPLV 82 L GYT+L + Q PL+ Sbjct: 123 LAGYTALIIVITIQPEPLL 141
>YKG6_CAEEL (P46556) Hypothetical protein B0285.6 in chromosome III| Length = 577 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -1 Query: 322 KDSRNRRVCNQRHSIKFL*YLSFTV**MLQYCDMAWF*VVCLVGLHFFG 176 +D+ + N+ H I +L +++F + M+ Y +WF +V L F G Sbjct: 238 RDNIEKNFPNEDHGISYLSWMAFAIPPMIFYMFSSWF----IVQLQFLG 282
>AAEB_SALPA (Q5PJT9) p-hydroxybenzoic acid efflux pump subunit aaeB (pHBA| efflux pump protein B) Length = 655 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -2 Query: 285 IVLSFYSIFLLPCDRCCSTVTWPGSK*FVWSVCTFLACLDTLASLHFFGLFGYTSLAGLT 106 I++S LL CC W G CT+++ L + + + +GL GYT+L + Sbjct: 84 IIISMIRAPLLMILVCC---VWVG-------FCTWISSLVRIENSYAWGLSGYTALIIVI 133 Query: 105 LNQLRPLV 82 Q PL+ Sbjct: 134 TIQTEPLL 141
>ECM1_RAT (Q62894) Extracellular matrix protein 1 precursor (Secretory| component P85) Length = 562 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +1 Query: 178 QKSANRPDKLLRTRPCHSTATS 243 QK A RPD LLR P H T S Sbjct: 293 QKEAPRPDYLLRPCPIHQTGIS 314
>IF2_DEHE1 (Q3Z7U3) Translation initiation factor IF-2| Length = 593 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = +2 Query: 146 KCNEASVSKQAKKVQTDQTNY-LEPGHVTVLQHLSHGKRKIL 268 K + S +K+ + +N+ L P VT++ H+ HGK ++L Sbjct: 79 KVLKKSAAKKVSPAKEKLSNFPLRPPVVTIMGHVDHGKTRLL 120 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,352,873 Number of Sequences: 219361 Number of extensions: 1014329 Number of successful extensions: 2599 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2516 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2593 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
