| Clone Name | rbast64c11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino acid selective channel protein Length = 674 Score = 151 bits (76), Expect = 1e-33 Identities = 88/92 (95%) Strand = Plus / Minus Query: 130 gctaggtgaggtagttgatgaactcgacggcggtcgcaatggcccctccggtgatggcgt 189 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 468 gctaggtgaggtagttgatgaactcgacggcggtcgcgatggcacctccggtgatggcgt 409 Query: 190 cctgggcaatcttgttccctttgttgtcgctc 221 ||||||| ||||||||||||||||||| |||| Sbjct: 408 cctgggcgatcttgttccctttgttgttgctc 377 Score = 56.0 bits (28), Expect = 5e-05 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 15 ttggaggaaacgggttcagttattaaacacggagcgcggacggtttcagtcaacaagttc 74 ||||||||||||| | || ||||| ||||| || | ||| || ||||||||| |||||| Sbjct: 575 ttggaggaaacggctccaattatt-aacacacagggtggatggcttcagtcaagaagttc 517 Query: 75 ttattcagtcttgtctgata 94 ||||||||||||||| |||| Sbjct: 516 ttattcagtcttgtccgata 497
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 67.9 bits (34), Expect = 1e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 135 gtgaggtagttgatgaactcgacggcggtcgcaatggcccctccggtgatggcgtcct 192 ||||||||||||||||||||||| || || |||| || ||||||||||||||||||| Sbjct: 89062 gtgaggtagttgatgaactcgacagctgttgcaacagcgcctccggtgatggcgtcct 89005
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 67.9 bits (34), Expect = 1e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 135 gtgaggtagttgatgaactcgacggcggtcgcaatggcccctccggtgatggcgtcct 192 ||||||||||||||||||||||| || || |||| || ||||||||||||||||||| Sbjct: 571663 gtgaggtagttgatgaactcgacagctgttgcaacagcgcctccggtgatggcgtcct 571606
>dbj|AK101693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059M19, full insert sequence Length = 697 Score = 67.9 bits (34), Expect = 1e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 135 gtgaggtagttgatgaactcgacggcggtcgcaatggcccctccggtgatggcgtcct 192 ||||||||||||||||||||||| || || |||| || ||||||||||||||||||| Sbjct: 519 gtgaggtagttgatgaactcgacagctgttgcaacagcgcctccggtgatggcgtcct 462
>gb|AY107980.1| Zea mays PCO142484 mRNA sequence Length = 690 Score = 54.0 bits (27), Expect = 2e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 130 gctaggtgaggtagttgatgaactcgacggcggtcgcaatggcccctccggtgatggcgt 189 ||||||||||||||||| |||||||||||| || || | ||| || |||||||||||| Sbjct: 457 gctaggtgaggtagttggcgaactcgacggccgttgcgacggcgccggcggtgatggcgt 398 Query: 190 cct 192 ||| Sbjct: 397 cct 395
>gb|AY104698.1| Zea mays PCO142485 mRNA sequence Length = 678 Score = 42.1 bits (21), Expect = 0.71 Identities = 54/65 (83%) Strand = Plus / Minus Query: 128 cggctaggtgaggtagttgatgaactcgacggcggtcgcaatggcccctccggtgatggc 187 ||||||||| | | ||||||||||||||||||| || || | || || |||||||||| Sbjct: 576 cggctaggtaatgcagttgatgaactcgacggctgtggcgaccgcgccggcggtgatggc 517 Query: 188 gtcct 192 ||||| Sbjct: 516 gtcct 512
>ref|NM_197160.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0041P03.9), mRNA Length = 2274 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tttcagtcaacaagttctta 77 |||||||||||||||||||| Sbjct: 1939 tttcagtcaacaagttctta 1920
>ref|XM_540955.2| PREDICTED: Canis familiaris similar to CG10011-PA, transcript variant 1 (LOC483835), mRNA Length = 4818 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tataaaaaggaaacaccgtt 112 |||||||||||||||||||| Sbjct: 4601 tataaaaaggaaacaccgtt 4620
>ref|XM_851745.1| PREDICTED: Canis familiaris similar to CG10011-PA, transcript variant 2 (LOC483835), mRNA Length = 4875 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tataaaaaggaaacaccgtt 112 |||||||||||||||||||| Sbjct: 4658 tataaaaaggaaacaccgtt 4677
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tttcagtcaacaagttctta 77 |||||||||||||||||||| Sbjct: 13531 tttcagtcaacaagttctta 13512
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tttcagtcaacaagttctta 77 |||||||||||||||||||| Sbjct: 18337239 tttcagtcaacaagttctta 18337258
>gb|AC069387.8| Homo sapiens BAC clone RP11-295G11 from 2, complete sequence Length = 47340 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gggcaatcttgttccctttg 212 |||||||||||||||||||| Sbjct: 7309 gggcaatcttgttccctttg 7328
>gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence Length = 105308 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ataaaaaggaaacaccgttc 113 |||||||||||||||||||| Sbjct: 78016 ataaaaaggaaacaccgttc 78035
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tttcagtcaacaagttctta 77 |||||||||||||||||||| Sbjct: 18346892 tttcagtcaacaagttctta 18346911 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,666,235 Number of Sequences: 3902068 Number of extensions: 1666235 Number of successful extensions: 151121 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 150999 Number of HSP's gapped (non-prelim): 122 length of query: 221 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 199 effective length of database: 17,147,199,772 effective search space: 3412292754628 effective search space used: 3412292754628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)