ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast64c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino... 151 1e-33
2gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome... 68 1e-08
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
4dbj|AK101693.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-08
5gb|AY107980.1| Zea mays PCO142484 mRNA sequence 54 2e-04
6gb|AY104698.1| Zea mays PCO142485 mRNA sequence 42 0.71
7ref|NM_197160.1| Oryza sativa (japonica cultivar-group) hypothet... 40 2.8
8ref|XM_540955.2| PREDICTED: Canis familiaris similar to CG10011-... 40 2.8
9ref|XM_851745.1| PREDICTED: Canis familiaris similar to CG10011-... 40 2.8
10gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 gen... 40 2.8
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
12gb|AC069387.8| Homo sapiens BAC clone RP11-295G11 from 2, comple... 40 2.8
13gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, com... 40 2.8
14gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8

>emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino acid selective channel
           protein
          Length = 674

 Score =  151 bits (76), Expect = 1e-33
 Identities = 88/92 (95%)
 Strand = Plus / Minus

                                                                       
Query: 130 gctaggtgaggtagttgatgaactcgacggcggtcgcaatggcccctccggtgatggcgt 189
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 468 gctaggtgaggtagttgatgaactcgacggcggtcgcgatggcacctccggtgatggcgt 409

                                           
Query: 190 cctgggcaatcttgttccctttgttgtcgctc 221
           ||||||| ||||||||||||||||||| ||||
Sbjct: 408 cctgggcgatcttgttccctttgttgttgctc 377



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 68/80 (85%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                       
Query: 15  ttggaggaaacgggttcagttattaaacacggagcgcggacggtttcagtcaacaagttc 74
           ||||||||||||| | || ||||| |||||  || | ||| || ||||||||| ||||||
Sbjct: 575 ttggaggaaacggctccaattatt-aacacacagggtggatggcttcagtcaagaagttc 517

                               
Query: 75  ttattcagtcttgtctgata 94
           ||||||||||||||| ||||
Sbjct: 516 ttattcagtcttgtccgata 497



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>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
             complete sequence
          Length = 176678

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 135   gtgaggtagttgatgaactcgacggcggtcgcaatggcccctccggtgatggcgtcct 192
             ||||||||||||||||||||||| || || ||||  || |||||||||||||||||||
Sbjct: 89062 gtgaggtagttgatgaactcgacagctgttgcaacagcgcctccggtgatggcgtcct 89005



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                        
Query: 135    gtgaggtagttgatgaactcgacggcggtcgcaatggcccctccggtgatggcgtcct 192
              ||||||||||||||||||||||| || || ||||  || |||||||||||||||||||
Sbjct: 571663 gtgaggtagttgatgaactcgacagctgttgcaacagcgcctccggtgatggcgtcct 571606



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>dbj|AK101693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059M19, full
           insert sequence
          Length = 697

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 135 gtgaggtagttgatgaactcgacggcggtcgcaatggcccctccggtgatggcgtcct 192
           ||||||||||||||||||||||| || || ||||  || |||||||||||||||||||
Sbjct: 519 gtgaggtagttgatgaactcgacagctgttgcaacagcgcctccggtgatggcgtcct 462



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>gb|AY107980.1| Zea mays PCO142484 mRNA sequence
          Length = 690

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 130 gctaggtgaggtagttgatgaactcgacggcggtcgcaatggcccctccggtgatggcgt 189
           |||||||||||||||||  |||||||||||| || || | ||| ||  ||||||||||||
Sbjct: 457 gctaggtgaggtagttggcgaactcgacggccgttgcgacggcgccggcggtgatggcgt 398

              
Query: 190 cct 192
           |||
Sbjct: 397 cct 395



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>gb|AY104698.1| Zea mays PCO142485 mRNA sequence
          Length = 678

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 128 cggctaggtgaggtagttgatgaactcgacggcggtcgcaatggcccctccggtgatggc 187
           ||||||||| | | ||||||||||||||||||| || || |  || ||  ||||||||||
Sbjct: 576 cggctaggtaatgcagttgatgaactcgacggctgtggcgaccgcgccggcggtgatggc 517

                
Query: 188 gtcct 192
           |||||
Sbjct: 516 gtcct 512



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>ref|NM_197160.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0041P03.9), mRNA
          Length = 2274

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 58   tttcagtcaacaagttctta 77
            ||||||||||||||||||||
Sbjct: 1939 tttcagtcaacaagttctta 1920



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>ref|XM_540955.2| PREDICTED: Canis familiaris similar to CG10011-PA, transcript variant
            1 (LOC483835), mRNA
          Length = 4818

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   tataaaaaggaaacaccgtt 112
            ||||||||||||||||||||
Sbjct: 4601 tataaaaaggaaacaccgtt 4620



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>ref|XM_851745.1| PREDICTED: Canis familiaris similar to CG10011-PA, transcript variant
            2 (LOC483835), mRNA
          Length = 4875

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   tataaaaaggaaacaccgtt 112
            ||||||||||||||||||||
Sbjct: 4658 tataaaaaggaaacaccgtt 4677



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>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
             sequence
          Length = 139614

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tttcagtcaacaagttctta 77
             ||||||||||||||||||||
Sbjct: 13531 tttcagtcaacaagttctta 13512



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 58       tttcagtcaacaagttctta 77
                ||||||||||||||||||||
Sbjct: 18337239 tttcagtcaacaagttctta 18337258



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>gb|AC069387.8| Homo sapiens BAC clone RP11-295G11 from 2, complete sequence
          Length = 47340

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  gggcaatcttgttccctttg 212
            ||||||||||||||||||||
Sbjct: 7309 gggcaatcttgttccctttg 7328



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>gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence
          Length = 105308

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    ataaaaaggaaacaccgttc 113
             ||||||||||||||||||||
Sbjct: 78016 ataaaaaggaaacaccgttc 78035



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 58       tttcagtcaacaagttctta 77
                ||||||||||||||||||||
Sbjct: 18346892 tttcagtcaacaagttctta 18346911


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,666,235
Number of Sequences: 3902068
Number of extensions: 1666235
Number of successful extensions: 151121
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 150999
Number of HSP's gapped (non-prelim): 122
length of query: 221
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 199
effective length of database: 17,147,199,772
effective search space: 3412292754628
effective search space used: 3412292754628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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