ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast64b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135502.4| Oryza sativa chromosome 3 BAC OSJNBb0085A04 genom... 54 3e-04
2gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 54 3e-04
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 3e-04
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
5dbj|AK121995.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
6gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete se... 44 0.31
7gb|AC136150.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
8gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
9emb|CR962134.2| Medicago truncatula chromosome 5 clone mte1-40n1... 42 1.2
10gb|DQ458594.1| Pseudomonas sp. P97.6 DNA gyrase subunit B (gyrB)... 42 1.2
11gb|DQ458582.1| Pseudomonas sp. P97.38 DNA gyrase subunit B (gyrB... 42 1.2
12gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
13emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4,... 42 1.2
14emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4,... 42 1.2
15gb|AC155255.3| Mus musculus BAC clone RP24-143P3 from chromosome... 42 1.2
16gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
17dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
20gb|AC130460.2| Homo sapiens chromosome 16 clone CTA-485G10, comp... 42 1.2
21gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, compl... 42 1.2
22gb|AC022910.9| Homo sapiens chromosome 8, clone RP11-710C11, com... 42 1.2
23dbj|AK100418.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
24emb|CR352257.8| Zebrafish DNA sequence from clone CH211-261B21 i... 42 1.2
25gb|AY449459.1| Oikopleura dioica clone BACOIKO003 5xk14, complet... 42 1.2
26gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
27gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
28dbj|AB039466.1| Pseudomonas corrugata gyrB gene for DNA gyrase s... 42 1.2
29ref|XM_468111.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.9
30gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genom... 40 4.9
31ref|XM_742381.1| Aspergillus fumigatus Af293 integral membrane p... 40 4.9
32emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 4.9
33ref|XM_808343.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 4.9
34gb|AY245373.1| Iris fulva clone FR3-6 IRRE retrotransposon, part... 40 4.9
35dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
36dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
37dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
38dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
39dbj|AP006048.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
40dbj|AP005967.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
41dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
42dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9 
>gb|AC135502.4| Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence,
           complete sequence
          Length = 132292

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 81  gtttcctaattgtcaaccaggctcagttgac 111
           ||||||||||||||||||||||||| |||||
Sbjct: 309 gtttcctaattgtcaaccaggctcaattgac 339



 Score = 46.1 bits (23), Expect = 0.079
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 322 cgctctcgtggcggtagaatccctccagggccgactccggcag 364
           ||||||| || |||||||||||| |||| || |||||||||||
Sbjct: 458 cgctctcctgccggtagaatccccccagtgctgactccggcag 500
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
              sequence
          Length = 190055

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                             
Query: 81     gtttcctaattgtcaaccaggctcagttgac 111
              ||||||||||||||||||||||||| |||||
Sbjct: 188326 gtttcctaattgtcaaccaggctcaattgac 188356



 Score = 46.1 bits (23), Expect = 0.079
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 322    cgctctcgtggcggtagaatccctccagggccgactccggcag 364
              ||||||| || |||||||||||| |||| || |||||||||||
Sbjct: 188475 cgctctcctgccggtagaatccccccagtgctgactccggcag 188517
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 81       gtttcctaattgtcaaccaggctcagttgac 111
                ||||||||||||||||||||||||| |||||
Sbjct: 21495415 gtttcctaattgtcaaccaggctcaattgac 21495445



 Score = 46.1 bits (23), Expect = 0.079
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 322      cgctctcgtggcggtagaatccctccagggccgactccggcag 364
                ||||||| || |||||||||||| |||| || |||||||||||
Sbjct: 21495564 cgctctcctgccggtagaatccccccagtgctgactccggcag 21495606



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 287      ggcggtggacggagcatggg 306
                ||||||||||||||||||||
Sbjct: 18037513 ggcggtggacggagcatggg 18037532
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 81       gtttcctaattgtcaaccaggctcagttgac 111
                ||||||||||||||||||||||||| |||||
Sbjct: 21488444 gtttcctaattgtcaaccaggctcaattgac 21488474



 Score = 46.1 bits (23), Expect = 0.079
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 322      cgctctcgtggcggtagaatccctccagggccgactccggcag 364
                ||||||| || |||||||||||| |||| || |||||||||||
Sbjct: 21488593 cgctctcctgccggtagaatccccccagtgctgactccggcag 21488635



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 287      ggcggtggacggagcatggg 306
                ||||||||||||||||||||
Sbjct: 18031054 ggcggtggacggagcatggg 18031073
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>dbj|AK121995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110A05, full
            insert sequence
          Length = 3726

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 81   gtttcctaattgtcaaccaggctcagttgac 111
            ||||||||||||||||||||||||| |||||
Sbjct: 3555 gtttcctaattgtcaaccaggctcaattgac 3525



 Score = 46.1 bits (23), Expect = 0.079
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 322  cgctctcgtggcggtagaatccctccagggccgactccggcag 364
            ||||||| || |||||||||||| |||| || |||||||||||
Sbjct: 3406 cgctctcctgccggtagaatccccccagtgctgactccggcag 3364
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>gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete sequence
          Length = 105004

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 28    tgaatcatcatagacatgtataaaaatcaa 57
             |||||||||||  |||||||||||||||||
Sbjct: 75058 tgaatcatcatttacatgtataaaaatcaa 75029
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>gb|AC136150.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0023F12, complete sequence
          Length = 147801

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 273   tcgtcgtcgtggccggcggtg 293
             |||||||||||||||||||||
Sbjct: 38066 tcgtcgtcgtggccggcggtg 38086
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>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0008H02,
              complete sequence
          Length = 143438

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 273    tcgtcgtcgtggccggcggtg 293
              |||||||||||||||||||||
Sbjct: 138601 tcgtcgtcgtggccggcggtg 138621
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>emb|CR962134.2| Medicago truncatula chromosome 5 clone mte1-40n1, COMPLETE SEQUENCE
          Length = 139651

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   aagcaatttagactttagagg 150
             |||||||||||||||||||||
Sbjct: 60799 aagcaatttagactttagagg 60779
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>gb|DQ458594.1| Pseudomonas sp. P97.6 DNA gyrase subunit B (gyrB) gene, partial cds
          Length = 545

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 181 cgtcgtcgccggtggtggcaa 201
           |||||||||||||||||||||
Sbjct: 162 cgtcgtcgccggtggtggcaa 182
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>gb|DQ458582.1| Pseudomonas sp. P97.38 DNA gyrase subunit B (gyrB) gene, partial
           cds
          Length = 539

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 181 cgtcgtcgccggtggtggcaa 201
           |||||||||||||||||||||
Sbjct: 156 cgtcgtcgccggtggtggcaa 176
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>gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0078C13, complete sequence
          Length = 140553

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 281   gtggccggcggtggacggagc 301
             |||||||||||||||||||||
Sbjct: 44662 gtggccggcggtggacggagc 44642
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>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01,
            complete sequence
          Length = 153643

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 273  tcgtcgtcgtggccggcggtggacggagc 301
            ||||||||||||||||||| ||| |||||
Sbjct: 3357 tcgtcgtcgtggccggcggcggagggagc 3329
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>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13,
              complete sequence
          Length = 123480

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 273    tcgtcgtcgtggccggcggtggacggagc 301
              ||||||||||||||||||| ||| |||||
Sbjct: 101424 tcgtcgtcgtggccggcggcggagggagc 101396
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>gb|AC155255.3| Mus musculus BAC clone RP24-143P3 from chromosome 12, complete sequence
          Length = 201217

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 96    accaggctcagttgacttact 116
             |||||||||||||||||||||
Sbjct: 56586 accaggctcagttgacttact 56566
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>gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNAb0078C13, complete sequence
          Length = 146538

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 281  gtggccggcggtggacggagc 301
            |||||||||||||||||||||
Sbjct: 6052 gtggccggcggtggacggagc 6072
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 273      tcgtcgtcgtggccggcggtggacggagc 301
                ||||||||||||||||||| ||| |||||
Sbjct: 32484623 tcgtcgtcgtggccggcggcggagggagc 32484595
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 273      tcgtcgtcgtggccggcggtg 293
                |||||||||||||||||||||
Sbjct: 17628453 tcgtcgtcgtggccggcggtg 17628473
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 281     gtggccggcggtggacggagc 301
               |||||||||||||||||||||
Sbjct: 9989293 gtggccggcggtggacggagc 9989313
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>gb|AC130460.2| Homo sapiens chromosome 16 clone CTA-485G10, complete sequence
          Length = 135347

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    atgtataaaaatcaagaaata 63
             |||||||||||||||||||||
Sbjct: 14596 atgtataaaaatcaagaaata 14616
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>gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, complete sequence
          Length = 163855

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 43     atgtataaaaatcaagaaata 63
              |||||||||||||||||||||
Sbjct: 145343 atgtataaaaatcaagaaata 145363
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>gb|AC022910.9| Homo sapiens chromosome 8, clone RP11-710C11, complete sequence
          Length = 181944

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     agcttttgccccaacagaggg 24
             |||||||||||||||||||||
Sbjct: 63345 agcttttgccccaacagaggg 63325
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>dbj|AK100418.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088A15, full
           insert sequence
          Length = 1282

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 273 tcgtcgtcgtggccggcggtggacggagc 301
           ||||||||||||||||||| ||| |||||
Sbjct: 189 tcgtcgtcgtggccggcggcggagggagc 161
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>emb|CR352257.8| Zebrafish DNA sequence from clone CH211-261B21 in linkage group 7,
              complete sequence
          Length = 159979

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 114    actcaagcaatcattcaagca 134
              |||||||||||||||||||||
Sbjct: 121315 actcaagcaatcattcaagca 121335
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>gb|AY449459.1| Oikopleura dioica clone BACOIKO003 5xk14, complete sequence
          Length = 158922

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   atttagactttagaggcaaac 155
             |||||||||||||||||||||
Sbjct: 37866 atttagactttagaggcaaac 37846
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 281     gtggccggcggtggacggagc 301
               |||||||||||||||||||||
Sbjct: 9995332 gtggccggcggtggacggagc 9995352
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 273      tcgtcgtcgtggccggcggtg 293
                |||||||||||||||||||||
Sbjct: 17723184 tcgtcgtcgtggccggcggtg 17723204
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>dbj|AB039466.1| Pseudomonas corrugata gyrB gene for DNA gyrase subunit B, partial
           cds, strain:NCPPB 3316
          Length = 890

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 181 cgtcgtcgccggtggtggcaa 201
           |||||||||||||||||||||
Sbjct: 606 cgtcgtcgccggtggtggcaa 586
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>ref|XM_468111.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 633

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 176 gtcaccgtcgtcgccggtggtggc 199
           |||| |||||||||||||||||||
Sbjct: 3   gtcatcgtcgtcgccggtggtggc 26
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>gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genomic sequence, complete
             sequence
          Length = 131589

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   ggcggtggacggagcatggg 306
             ||||||||||||||||||||
Sbjct: 78688 ggcggtggacggagcatggg 78669
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>ref|XM_742381.1| Aspergillus fumigatus Af293 integral membrane protein (Afu8g06760)
           partial mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 196 tggcaaaggagccgacgagt 215
           ||||||||||||||||||||
Sbjct: 346 tggcaaaggagccgacgagt 327
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 301    catgggcatgagcatcctcgccgc 324
              |||||||||| |||||||||||||
Sbjct: 242094 catgggcatgggcatcctcgccgc 242071
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>ref|XM_808343.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053503999.30) partial mRNA
          Length = 4143

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 178 caccgtcgtcgccggtggtggcaa 201
           |||||||||||| |||||||||||
Sbjct: 102 caccgtcgtcgctggtggtggcaa 79
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>gb|AY245373.1| Iris fulva clone FR3-6 IRRE retrotransposon, partial sequence
          Length = 5132

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  caatcattcaagcaatttag 140
            ||||||||||||||||||||
Sbjct: 3847 caatcattcaagcaatttag 3828
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 181     cgtcgtcgccggtggtggca 200
               ||||||||||||||||||||
Sbjct: 6323613 cgtcgtcgccggtggtggca 6323594
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 276      tcgtcgtggccggcggtgga 295
                ||||||||||||||||||||
Sbjct: 17007700 tcgtcgtggccggcggtgga 17007719
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 176      gtcaccgtcgtcgccggtggtggc 199
                |||| |||||||||||||||||||
Sbjct: 33126868 gtcatcgtcgtcgccggtggtggc 33126845



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 283      ggccggcggtggacggagca 302
                ||||||||||||||||||||
Sbjct: 29739016 ggccggcggtggacggagca 29738997
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>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1191_G08
          Length = 172832

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    ggccggcggtggacggagca 302
              ||||||||||||||||||||
Sbjct: 107995 ggccggcggtggacggagca 107976
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>dbj|AP006048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1423D04
          Length = 154474

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    tcgtcgtggccggcggtgga 295
              ||||||||||||||||||||
Sbjct: 140722 tcgtcgtggccggcggtgga 140741
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>dbj|AP005967.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:B1089G05
          Length = 161420

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 276  tcgtcgtggccggcggtgga 295
            ||||||||||||||||||||
Sbjct: 8552 tcgtcgtggccggcggtgga 8571
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>dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1116_C08
          Length = 102317

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   cgtcgtcgccggtggtggca 200
             ||||||||||||||||||||
Sbjct: 74173 cgtcgtcgccggtggtggca 74154
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>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1369_G08
          Length = 104190

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 176   gtcaccgtcgtcgccggtggtggc 199
             |||| |||||||||||||||||||
Sbjct: 42528 gtcatcgtcgtcgccggtggtggc 42505


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,906,763
Number of Sequences: 3902068
Number of extensions: 2906763
Number of successful extensions: 54291
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53644
Number of HSP's gapped (non-prelim): 647
length of query: 365
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 343
effective length of database: 17,147,199,772
effective search space: 5881489521796
effective search space used: 5881489521796
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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