ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast63h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483802.1| Oryza sativa (japonica cultivar-group), mRNA 96 1e-16
2dbj|AK103815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
3gb|AY107628.1| Zea mays PCO087035 mRNA sequence 72 1e-09
4ref|XM_483803.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
6dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
7dbj|AK105950.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
8gb|AC099707.14| Mus musculus chromosome 1, clone RP23-329C7, com... 42 1.3
9gb|AC169813.2| Rhesus Macaque BAC CH250-16M3 (Children's Hospit... 42 1.3
10gb|AC004622.1| Homo sapiens chromosome 5, PAC clone 170m10 (LBNL... 42 1.3
11gb|AE004145.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 42 1.3
12gb|AC008497.7| Homo sapiens chromosome 5 clone CTC-432M15, compl... 42 1.3
13gb|AC169807.2| Rhesus Macaque CHR4 BAC CH250-23P16 (Children's H... 42 1.3
14gb|AC147907.2| Xenopus tropicalis clone CH216-74C22, complete se... 40 5.1
15gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete se... 40 5.1
16emb|Z75529.1|CEC44H9 Caenorhabditis elegans Cosmid C44H9, comple... 40 5.1
17emb|AL137224.17| Human DNA sequence from clone RP4-594L9 on chro... 40 5.1
18emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 5.1
19gb|AC087863.10| Homo sapiens 12q BAC RP11-357K6 (Roswell Park Ca... 40 5.1
20gb|AC021829.8| Homo sapiens chromosome 11, clone RP11-436H16, co... 40 5.1
21ref|NM_073812.2| Caenorhabditis elegans C44H9.4 (C44H9.4) mRNA, ... 40 5.1
22gb|AF297071.1|AF297071 Syringa pinnatifolia specimen-voucher Spi... 40 5.1
23gb|AC069019.8|AC069019 Mus musculus BAC RP23-455N13 (Roswell Pa... 40 5.1
24gb|AC108039.4| Homo sapiens BAC clone RP11-210C5 from 2, complet... 40 5.1
25gb|AC139713.1| Homo sapiens BAC clone RP11-481K16 from 4, comple... 40 5.1
26emb|AJ130983.1|WYE130983 Wheat yellow mosaic virus partial gene ... 40 5.1
27emb|BX284626.3| Mouse DNA sequence from clone RP23-76P19 on chro... 40 5.1
28emb|AL805912.5| Mouse DNA sequence from clone RP23-425K3 on chro... 40 5.1 
>ref|XM_483802.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1597

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 146  gagaggtttggttgcttcggtgccaccccacttttggacacggcttgaagctagcgcagc 205
            ||||||||||||| | || ||||| |||||||| || |||||   ||||||| |||||||
Sbjct: 1336 gagaggtttggtttcatctgtgcctccccacttgtgcacacgagctgaagcttgcgcagc 1277

                                                                        
Query: 206  ctctgtgttccagtctgttctccacactatgacgagtaaaatcaatgtctgaagtccaac 265
            |||||  ||||||||||||||||| ||||  | ||||| ||| | ||| |||||| ||||
Sbjct: 1276 ctctgccttccagtctgttctccagactacaaagagtagaatgagtgtttgaagtgcaac 1217

                                                
Query: 266  cccgcaaagcatgccagcccaaatccccccaactcc 301
             || || ||||||||| |||||| |||||| |||||
Sbjct: 1216 tccacagagcatgccaccccaaacccccccgactcc 1181
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>dbj|AK103815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147C23, full
            insert sequence
          Length = 1597

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 146  gagaggtttggttgcttcggtgccaccccacttttggacacggcttgaagctagcgcagc 205
            ||||||||||||| | || ||||| |||||||| || |||||   ||||||| |||||||
Sbjct: 1336 gagaggtttggtttcatctgtgcctccccacttgtgcacacgagctgaagcttgcgcagc 1277

                                                                        
Query: 206  ctctgtgttccagtctgttctccacactatgacgagtaaaatcaatgtctgaagtccaac 265
            |||||  ||||||||||||||||| ||||  | ||||| ||| | ||| |||||| ||||
Sbjct: 1276 ctctgccttccagtctgttctccagactacaaagagtagaatgagtgtttgaagtgcaac 1217

                                                
Query: 266  cccgcaaagcatgccagcccaaatccccccaactcc 301
             || || ||||||||| |||||| |||||| |||||
Sbjct: 1216 tccacagagcatgccaccccaaacccccccgactcc 1181
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>gb|AY107628.1| Zea mays PCO087035 mRNA sequence
          Length = 754

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 87/104 (83%)
 Strand = Plus / Minus

                                                                       
Query: 270 caaagcatgccagcccaaatccccccaactccatagttgaacttgtagccgaggagatat 329
           ||||||||||| | ||||||||||||||||||| || |||||||||| ||||| |  || 
Sbjct: 274 caaagcatgccggaccaaatccccccaactccaaagctgaacttgtatccgagcaagtag 215

                                                       
Query: 330 cccaatggcaatccgaaaatgtagtagcaaccaaggttgatgta 373
           ||||  ||||  ||||| || |||||||| || |||||||||||
Sbjct: 214 cccaggggcaggccgaagatatagtagcagccgaggttgatgta 171



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 166 tgccaccccacttttggacacggcttgaagctagcgcagcctctgtgttccagtctgttc 225
           |||| ||||||||||| ||||||| ||||||| | || |||||||  ||||| ||||| |
Sbjct: 378 tgccgccccacttttgcacacggcctgaagcttgtgcggcctctgctttccaatctgtcc 319

               
Query: 226 tcca 229
           ||||
Sbjct: 318 tcca 315
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>ref|XM_483803.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1635

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 213  ttccagtctgttctccacactatgacgagtaaaatcaatgtctgaagtccaaccccgcaa 272
            ||||||||||||||||| ||||  | ||||| ||| | ||| |||||| |||| || || 
Sbjct: 1557 ttccagtctgttctccagactacaaagagtagaatgagtgtttgaagtgcaactccacag 1498

                                 
Query: 273  agcatgccagcccaaatcccc 293
            ||||||||| |||||| ||||
Sbjct: 1497 agcatgccaccccaaaccccc 1477
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                            
Query: 213      ttccagtctgttctccacactatgacgagtaaaatcaatgtctgaagtccaaccccgcaa 272
                ||||||||||||||||| ||||  | ||||| ||| | ||| |||||| |||| || || 
Sbjct: 28177068 ttccagtctgttctccagactacaaagagtagaatgagtgtttgaagtgcaactccacag 28177127

                                     
Query: 273      agcatgccagcccaaatcccc 293
                ||||||||| |||||| ||||
Sbjct: 28177128 agcatgccaccccaaaccccc 28177148



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                            
Query: 146      gagaggtttggttgcttcggtgccaccccacttttggacacggcttgaagctagcgcagc 205
                ||||||||||||| | || ||||| |||||||| || |||||   ||||||| |||||||
Sbjct: 28176890 gagaggtttggtttcatctgtgcctccccacttgtgcacacgagctgaagcttgcgcagc 28176949

                  
Query: 206      ct 207
                ||
Sbjct: 28176950 ct 28176951
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>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                         
Query: 213   ttccagtctgttctccacactatgacgagtaaaatcaatgtctgaagtccaaccccgcaa 272
             ||||||||||||||||| ||||  | ||||| ||| | ||| |||||| |||| || || 
Sbjct: 60541 ttccagtctgttctccagactacaaagagtagaatgagtgtttgaagtgcaactccacag 60600

                                  
Query: 273   agcatgccagcccaaatcccc 293
             ||||||||| |||||| ||||
Sbjct: 60601 agcatgccaccccaaaccccc 60621



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                         
Query: 146   gagaggtttggttgcttcggtgccaccccacttttggacacggcttgaagctagcgcagc 205
             ||||||||||||| | || ||||| |||||||| || |||||   ||||||| |||||||
Sbjct: 60363 gagaggtttggtttcatctgtgcctccccacttgtgcacacgagctgaagcttgcgcagc 60422

               
Query: 206   ct 207
             ||
Sbjct: 60423 ct 60424
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>dbj|AK105950.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C12, full
            insert sequence
          Length = 1635

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 213  ttccagtctgttctccacactatgacgagtaaaatcaatgtctgaagtccaaccccgcaa 272
            ||||||||||||||||| ||||  | ||||| ||| | ||| |||||| |||| || || 
Sbjct: 1557 ttccagtctgttctccagactacaaagagtagaatgagtgtttgaagtgcaactccacag 1498

                                 
Query: 273  agcatgccagcccaaatcccc 293
            ||||||||| |||||| ||||
Sbjct: 1497 agcatgccaccccaaaccccc 1477
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>gb|AC099707.14| Mus musculus chromosome 1, clone RP23-329C7, complete sequence
          Length = 204557

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   agaggtttggttgcttcggtg 167
             |||||||||||||||||||||
Sbjct: 32733 agaggtttggttgcttcggtg 32713
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>gb|AC169813.2| Rhesus Macaque  BAC CH250-16M3 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 168861

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 202   cagcctctgtgttccagtctg 222
             |||||||||||||||||||||
Sbjct: 29043 cagcctctgtgttccagtctg 29063
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>gb|AC004622.1| Homo sapiens chromosome 5, PAC clone 170m10 (LBNL H89), complete
             sequence
          Length = 85181

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 119   tgcttatgtgatctaattctc 139
             |||||||||||||||||||||
Sbjct: 19752 tgcttatgtgatctaattctc 19732
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>gb|AE004145.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 53
            of 251 of the complete chromosome
          Length = 10372

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 13   tctcataccctgttgatgtttgata 37
            ||||||||||| |||||||||||||
Sbjct: 8025 tctcataccctcttgatgtttgata 8049
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>gb|AC008497.7| Homo sapiens chromosome 5 clone CTC-432M15, complete sequence
          Length = 132119

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   tgcttatgtgatctaattctc 139
             |||||||||||||||||||||
Sbjct: 42549 tgcttatgtgatctaattctc 42569
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>gb|AC169807.2| Rhesus Macaque CHR4 BAC CH250-23P16 (Children's Hospital Oakland
            Research Institute Rhesus macaque Adult Male BAC Library)
            complete sequence
          Length = 172055

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 202  cagcctctgtgttccagtctg 222
            |||||||||||||||||||||
Sbjct: 6373 cagcctctgtgttccagtctg 6353
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>gb|AC147907.2| Xenopus tropicalis clone CH216-74C22, complete sequence
          Length = 184109

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     ctgttaaagatgaaagatgg 105
              ||||||||||||||||||||
Sbjct: 145753 ctgttaaagatgaaagatgg 145772
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>gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete sequence
          Length = 181178

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    ctgttaaagatgaaagatgg 105
             ||||||||||||||||||||
Sbjct: 48920 ctgttaaagatgaaagatgg 48901
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>emb|Z75529.1|CEC44H9 Caenorhabditis elegans Cosmid C44H9, complete sequence
          Length = 28684

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   atagttgaacttgtagccga 321
             ||||||||||||||||||||
Sbjct: 12606 atagttgaacttgtagccga 12587
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>emb|AL137224.17| Human DNA sequence from clone RP4-594L9 on chromosome 11p12-13 Contains
             the ELF5 (E74-like factor 5 (ets domain transcription
             factor)) gene, ESTs, STSs and GSSs, complete sequence
          Length = 85138

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   ttccagtctgttctccacac 232
             ||||||||||||||||||||
Sbjct: 77637 ttccagtctgttctccacac 77656
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>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1062590

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     tttgatactcgaagaatttc 50
              ||||||||||||||||||||
Sbjct: 153671 tttgatactcgaagaatttc 153690
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>gb|AC087863.10| Homo sapiens 12q BAC RP11-357K6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 179876

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 76     aagacgaacactgttaaagatgaa 99
              |||| |||||||||||||||||||
Sbjct: 100753 aagatgaacactgttaaagatgaa 100730
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>gb|AC021829.8| Homo sapiens chromosome 11, clone RP11-436H16, complete sequence
          Length = 163497

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    actgttaaagatgaaagatg 104
             ||||||||||||||||||||
Sbjct: 53507 actgttaaagatgaaagatg 53526
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>ref|NM_073812.2| Caenorhabditis elegans C44H9.4 (C44H9.4) mRNA, complete cds
          Length = 3478

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  atagttgaacttgtagccga 321
            ||||||||||||||||||||
Sbjct: 3290 atagttgaacttgtagccga 3271
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>gb|AF297071.1|AF297071 Syringa pinnatifolia specimen-voucher Spin2499 external transcribed
           spacer, partial sequence
          Length = 362

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 210 gtgttccagtctgttctccacact 233
           ||||||||| ||||||||||||||
Sbjct: 192 gtgttccagcctgttctccacact 215
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>gb|AC069019.8|AC069019 Mus musculus  BAC RP23-455N13 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 196175

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 131    ctaattctcttccaggagaggttt 154
              ||||||||||| ||||||||||||
Sbjct: 151006 ctaattctctttcaggagaggttt 150983
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>gb|AC108039.4| Homo sapiens BAC clone RP11-210C5 from 2, complete sequence
          Length = 168612

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   tccagtctgttctccacact 233
             ||||||||||||||||||||
Sbjct: 56992 tccagtctgttctccacact 57011
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>gb|AC139713.1| Homo sapiens BAC clone RP11-481K16 from 4, complete sequence
          Length = 196020

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    agtctgttctccacactatg 236
              ||||||||||||||||||||
Sbjct: 187293 agtctgttctccacactatg 187312
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>emb|AJ130983.1|WYE130983 Wheat yellow mosaic virus partial gene for polyprotein, (NIb
            polymerase and coat protein), genomic RNA, country China,
            Pujiang
          Length = 2034

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 355  agcaaccaaggttgatgtatgcaa 378
            ||||||||||||||||| ||||||
Sbjct: 1326 agcaaccaaggttgatggatgcaa 1349
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>emb|BX284626.3| Mouse DNA sequence from clone RP23-76P19 on chromosome 11, complete
             sequence
          Length = 182810

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 131   ctaattctcttccaggagaggttt 154
             ||||||||||| ||||||||||||
Sbjct: 64088 ctaattctctttcaggagaggttt 64111
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>emb|AL805912.5| Mouse DNA sequence from clone RP23-425K3 on chromosome 4, complete
              sequence
          Length = 151967

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    ttctcttccaggagaggttt 154
              ||||||||||||||||||||
Sbjct: 130483 ttctcttccaggagaggttt 130464


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,858,494
Number of Sequences: 3902068
Number of extensions: 2858494
Number of successful extensions: 48201
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48148
Number of HSP's gapped (non-prelim): 52
length of query: 384
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 362
effective length of database: 17,147,199,772
effective search space: 6207286317464
effective search space used: 6207286317464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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