ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast63g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK100470.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 2e-76
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 174 2e-40
3gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare str... 174 2e-40
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
5gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome... 174 2e-40
6gb|AY111637.1| Zea mays CL22329_1 mRNA sequence 141 2e-30
7gb|AY258461.1| Podovirus SOG clone SOG-S-R DNA polymerase gene, ... 44 0.39
8ref|XM_515086.1| PREDICTED: Pan troglodytes similar to KIAA0542 ... 40 6.0
9ref|XM_675783.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.0
10gb|AY386314.1| Bacillus methanolicus strain MGA3 plasmid pBM19, ... 40 6.0
11ref|XM_534317.2| PREDICTED: Canis familiaris similar to signal s... 40 6.0
12emb|AL096768.7|HSJ858B16 Human DNA sequence from clone RP5-858B1... 40 6.0
13gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cance... 40 6.0
14gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 6.0
15gb|AC161624.4| Pan troglodytes BAC clone CH251-149E7 from chromo... 40 6.0
16gb|DP000042.1| Lemur catta target 106 genomic scaffold 40 6.0
17emb|BX323560.16| Zebrafish DNA sequence from clone DKEY-265E15 i... 40 6.0
18emb|BX465196.11| Mouse DNA sequence from clone RP23-459K15 on ch... 40 6.0
19dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
20gb|AC010744.7| Homo sapiens BAC clone RP11-548D17 from 2, comple... 40 6.0
21gb|AC009480.4| Homo sapiens BAC clone RP11-295N18 from 2, comple... 40 6.0
22dbj|AK105279.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
23gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
24emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb... 40 6.0
25gb|AC140983.4| Mus musculus BAC clone RP23-167M17 from 18, compl... 40 6.0
26emb|AL691445.21| Mouse DNA sequence from clone RP23-67G3 on chro... 40 6.0
27emb|AL845304.4| Mouse DNA sequence from clone RP23-184H6 on chro... 40 6.0
28emb|AL592243.14| Mouse DNA sequence from clone RP23-101B24 on ch... 40 6.0
29emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chr... 40 6.0

>dbj|AK100470.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093E24, full
            insert sequence
          Length = 1833

 Score =  293 bits (148), Expect = 2e-76
 Identities = 310/364 (85%)
 Strand = Plus / Minus

                                                                        
Query: 86   ctagtcagccattttgttcaatcgatgaatcatactcctggcaagacgattcccagggtc 145
            |||||||||||| |||||||  ||||| ||||||||||| ||||| | |||||| |||||
Sbjct: 1626 ctagtcagccatcttgttcaggcgatggatcatactcctcgcaagcctattccctgggtc 1567

                                                                        
Query: 146  aatcttcagaacaaaacgcagatcctcagccccaagcctatatttctcactactctcata 205
            ||| |||||||| ||||| || ||||| || |||||||| |||||||||   ||||||||
Sbjct: 1566 aattttcagaaccaaacggaggtcctctgcaccaagcctgtatttctcagagctctcata 1507

                                                                        
Query: 206  taagagagcacgttgcactagcaccgacacattatccttatcttgctcgggcaccttcga 265
            ||  || |||||||| || |||||||| |||||||||||||||| |||  | ||||||||
Sbjct: 1506 tagaagggcacgttggacaagcaccgaaacattatccttatctttctctagtaccttcga 1447

                                                                        
Query: 266  acagtcggcaatagccttcttgtactcgccgacctccttataggaggaggcccttgatga 325
            |||||||||||| |||||||||||||| || |||||||| || || || |||||||||||
Sbjct: 1446 acagtcggcaattgccttcttgtactccccaacctccttgtaagatgaagcccttgatga 1387

                                                                        
Query: 326  caacacctctgcaataccagcatttttcccagttttctcgatgagcagaacagcccaaga 385
            || ||||||| ||||  ||||||  |||||||  ||||| ||||| | ||| ||||| ||
Sbjct: 1386 cagcacctctacaatgtcagcatacttcccagacttctcaatgagtacaacggcccatga 1327

                                                                        
Query: 386  caaccatttgatagcatcagcatactgcccacccttgtaattatccattccttttgcctt 445
            || ||| ||||| ||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct: 1326 cagccacttgatcgcatcagcatactgcccacccttgtaattatccatccctttggactt 1267

                
Query: 446  agca 449
            ||||
Sbjct: 1266 agca 1263



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 1    atagtaaaacaatttgaaataactcacagtttccgtgtcaagg 43
            |||||||| |||||  |||||||||||||||  ||||||||||
Sbjct: 1710 atagtaaatcaattcaaaataactcacagttctcgtgtcaagg 1668



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  174 bits (88), Expect = 2e-40
 Identities = 166/192 (86%)
 Strand = Plus / Minus

                                                                            
Query: 258      accttcgaacagtcggcaatagccttcttgtactcgccgacctccttataggaggaggcc 317
                |||||||||||||||||||| |||||||||||||| || |||||||| || || || |||
Sbjct: 12665551 accttcgaacagtcggcaattgccttcttgtactccccaacctccttgtaagatgaagcc 12665492

                                                                            
Query: 318      cttgatgacaacacctctgcaataccagcatttttcccagttttctcgatgagcagaaca 377
                |||||||||| ||||||| ||||  ||||||  |||||||  ||||| ||||| | ||| 
Sbjct: 12665491 cttgatgacagcacctctacaatgtcagcatacttcccagacttctcaatgagtacaacg 12665432

                                                                            
Query: 378      gcccaagacaaccatttgatagcatcagcatactgcccacccttgtaattatccattcct 437
                ||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 12665431 gcccatgacagccacttgatcgcatcagcatactgcccacccttgtaattatccatccct 12665372

                            
Query: 438      tttgccttagca 449
                || | |||||||
Sbjct: 12665371 ttggacttagca 12665360



 Score =  135 bits (68), Expect = 1e-28
 Identities = 140/164 (85%)
 Strand = Plus / Minus

                                                                            
Query: 86       ctagtcagccattttgttcaatcgatgaatcatactcctggcaagacgattcccagggtc 145
                |||||||||||| |||||||  ||||| ||||||||||| ||||| | |||||| |||||
Sbjct: 12665813 ctagtcagccatcttgttcaggcgatggatcatactcctcgcaagcctattccctgggtc 12665754

                                                                            
Query: 146      aatcttcagaacaaaacgcagatcctcagccccaagcctatatttctcactactctcata 205
                ||| |||||||| ||||| || ||||| || |||||||| |||||||||   ||||||||
Sbjct: 12665753 aattttcagaaccaaacggaggtcctctgcaccaagcctgtatttctcagagctctcata 12665694

                                                            
Query: 206      taagagagcacgttgcactagcaccgacacattatccttatctt 249
                ||  || |||||||| || |||||||| ||||||||||||||||
Sbjct: 12665693 tagaagggcacgttggacaagcaccgaaacattatccttatctt 12665650



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                           
Query: 1        atagtaaaacaatttgaaataactcacagtttccgtgtcaagg 43
                |||||||| |||||  |||||||||||||||  ||||||||||
Sbjct: 12665897 atagtaaatcaattcaaaataactcacagttctcgtgtcaagg 12665855



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>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score =  174 bits (88), Expect = 2e-40
 Identities = 166/192 (86%)
 Strand = Plus / Plus

                                                                         
Query: 258   accttcgaacagtcggcaatagccttcttgtactcgccgacctccttataggaggaggcc 317
             |||||||||||||||||||| |||||||||||||| || |||||||| || || || |||
Sbjct: 11438 accttcgaacagtcggcaattgccttcttgtactccccaacctccttgtaagatgaagcc 11497

                                                                         
Query: 318   cttgatgacaacacctctgcaataccagcatttttcccagttttctcgatgagcagaaca 377
             |||||||||| ||||||| ||||  ||||||  |||||||  ||||| ||||| | ||| 
Sbjct: 11498 cttgatgacagcacctctacaatgtcagcatacttcccagacttctcaatgagtacaacg 11557

                                                                         
Query: 378   gcccaagacaaccatttgatagcatcagcatactgcccacccttgtaattatccattcct 437
             ||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 11558 gcccatgacagccacttgatcgcatcagcatactgcccacccttgtaattatccatccct 11617

                         
Query: 438   tttgccttagca 449
             || | |||||||
Sbjct: 11618 ttggacttagca 11629



 Score =  135 bits (68), Expect = 1e-28
 Identities = 140/164 (85%)
 Strand = Plus / Plus

                                                                         
Query: 86    ctagtcagccattttgttcaatcgatgaatcatactcctggcaagacgattcccagggtc 145
             |||||||||||| |||||||  ||||| ||||||||||| ||||| | |||||| |||||
Sbjct: 11176 ctagtcagccatcttgttcaggcgatggatcatactcctcgcaagcctattccctgggtc 11235

                                                                         
Query: 146   aatcttcagaacaaaacgcagatcctcagccccaagcctatatttctcactactctcata 205
             ||| |||||||| ||||| || ||||| || |||||||| |||||||||   ||||||||
Sbjct: 11236 aattttcagaaccaaacggaggtcctctgcaccaagcctgtatttctcagagctctcata 11295

                                                         
Query: 206   taagagagcacgttgcactagcaccgacacattatccttatctt 249
             ||  || |||||||| || |||||||| ||||||||||||||||
Sbjct: 11296 tagaagggcacgttggacaagcaccgaaacattatccttatctt 11339



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 1     atagtaaaacaatttgaaataactcacagtttccgtgtcaagg 43
             |||||||| |||||  |||||||||||||||  ||||||||||
Sbjct: 11092 atagtaaatcaattcaaaataactcacagttctcgtgtcaagg 11134



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  174 bits (88), Expect = 2e-40
 Identities = 166/192 (86%)
 Strand = Plus / Minus

                                                                            
Query: 258      accttcgaacagtcggcaatagccttcttgtactcgccgacctccttataggaggaggcc 317
                |||||||||||||||||||| |||||||||||||| || |||||||| || || || |||
Sbjct: 12662314 accttcgaacagtcggcaattgccttcttgtactccccaacctccttgtaagatgaagcc 12662255

                                                                            
Query: 318      cttgatgacaacacctctgcaataccagcatttttcccagttttctcgatgagcagaaca 377
                |||||||||| ||||||| ||||  ||||||  |||||||  ||||| ||||| | ||| 
Sbjct: 12662254 cttgatgacagcacctctacaatgtcagcatacttcccagacttctcaatgagtacaacg 12662195

                                                                            
Query: 378      gcccaagacaaccatttgatagcatcagcatactgcccacccttgtaattatccattcct 437
                ||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 12662194 gcccatgacagccacttgatcgcatcagcatactgcccacccttgtaattatccatccct 12662135

                            
Query: 438      tttgccttagca 449
                || | |||||||
Sbjct: 12662134 ttggacttagca 12662123



 Score =  135 bits (68), Expect = 1e-28
 Identities = 140/164 (85%)
 Strand = Plus / Minus

                                                                            
Query: 86       ctagtcagccattttgttcaatcgatgaatcatactcctggcaagacgattcccagggtc 145
                |||||||||||| |||||||  ||||| ||||||||||| ||||| | |||||| |||||
Sbjct: 12662576 ctagtcagccatcttgttcaggcgatggatcatactcctcgcaagcctattccctgggtc 12662517

                                                                            
Query: 146      aatcttcagaacaaaacgcagatcctcagccccaagcctatatttctcactactctcata 205
                ||| |||||||| ||||| || ||||| || |||||||| |||||||||   ||||||||
Sbjct: 12662516 aattttcagaaccaaacggaggtcctctgcaccaagcctgtatttctcagagctctcata 12662457

                                                            
Query: 206      taagagagcacgttgcactagcaccgacacattatccttatctt 249
                ||  || |||||||| || |||||||| ||||||||||||||||
Sbjct: 12662456 tagaagggcacgttggacaagcaccgaaacattatccttatctt 12662413



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                           
Query: 1        atagtaaaacaatttgaaataactcacagtttccgtgtcaagg 43
                |||||||| |||||  |||||||||||||||  ||||||||||
Sbjct: 12662660 atagtaaatcaattcaaaataactcacagttctcgtgtcaagg 12662618



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>gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0050D18, complete sequence
          Length = 126350

 Score =  174 bits (88), Expect = 2e-40
 Identities = 166/192 (86%)
 Strand = Plus / Minus

                                                                         
Query: 258   accttcgaacagtcggcaatagccttcttgtactcgccgacctccttataggaggaggcc 317
             |||||||||||||||||||| |||||||||||||| || |||||||| || || || |||
Sbjct: 20004 accttcgaacagtcggcaattgccttcttgtactccccaacctccttgtaagatgaagcc 19945

                                                                         
Query: 318   cttgatgacaacacctctgcaataccagcatttttcccagttttctcgatgagcagaaca 377
             |||||||||| ||||||| ||||  ||||||  |||||||  ||||| ||||| | ||| 
Sbjct: 19944 cttgatgacagcacctctacaatgtcagcatacttcccagacttctcaatgagtacaacg 19885

                                                                         
Query: 378   gcccaagacaaccatttgatagcatcagcatactgcccacccttgtaattatccattcct 437
             ||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 19884 gcccatgacagccacttgatcgcatcagcatactgcccacccttgtaattatccatccct 19825

                         
Query: 438   tttgccttagca 449
             || | |||||||
Sbjct: 19824 ttggacttagca 19813



 Score =  135 bits (68), Expect = 1e-28
 Identities = 140/164 (85%)
 Strand = Plus / Minus

                                                                         
Query: 86    ctagtcagccattttgttcaatcgatgaatcatactcctggcaagacgattcccagggtc 145
             |||||||||||| |||||||  ||||| ||||||||||| ||||| | |||||| |||||
Sbjct: 20266 ctagtcagccatcttgttcaggcgatggatcatactcctcgcaagcctattccctgggtc 20207

                                                                         
Query: 146   aatcttcagaacaaaacgcagatcctcagccccaagcctatatttctcactactctcata 205
             ||| |||||||| ||||| || ||||| || |||||||| |||||||||   ||||||||
Sbjct: 20206 aattttcagaaccaaacggaggtcctctgcaccaagcctgtatttctcagagctctcata 20147

                                                         
Query: 206   taagagagcacgttgcactagcaccgacacattatccttatctt 249
             ||  || |||||||| || |||||||| ||||||||||||||||
Sbjct: 20146 tagaagggcacgttggacaagcaccgaaacattatccttatctt 20103



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 1     atagtaaaacaatttgaaataactcacagtttccgtgtcaagg 43
             |||||||| |||||  |||||||||||||||  ||||||||||
Sbjct: 20350 atagtaaatcaattcaaaataactcacagttctcgtgtcaagg 20308



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>gb|AY111637.1| Zea mays CL22329_1 mRNA sequence
          Length = 345

 Score =  141 bits (71), Expect = 2e-30
 Identities = 161/191 (84%)
 Strand = Plus / Plus

                                                                       
Query: 81  catccctagtcagccattttgttcaatcgatgaatcatactcctggcaagacgattccca 140
           ||||||||||||||||  |||||||  || |||||  ||||||||||||| | |||   |
Sbjct: 136 catccctagtcagccaacttgttcaggcggtgaattgtactcctggcaagcctatttgta 195

                                                                       
Query: 141 gggtcaatcttcagaacaaaacgcagatcctcagccccaagcctatatttctcactactc 200
           || |||||||||||||| |||||||| ||||| || |||||||||||||||||  | || 
Sbjct: 196 ggatcaatcttcagaaccaaacgcaggtcctcggcaccaagcctatatttctctgtgctt 255

                                                                       
Query: 201 tcatataagagagcacgttgcactagcaccgacacattatccttatcttgctcgggcacc 260
           ||||| | ||||||||| ||||||||||| || ||||||||||||||||| ||  |||||
Sbjct: 256 tcataaaggagagcacgctgcactagcactgagacattatccttatcttgatccagcacc 315

                      
Query: 261 ttcgaacagtc 271
           ||||| |||||
Sbjct: 316 ttcgagcagtc 326



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>gb|AY258461.1| Podovirus SOG clone SOG-S-R DNA polymerase gene, partial cds
          Length = 1227

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 38  tcaaggatgattacgatggtgg 59
           ||||||||||||||||||||||
Sbjct: 140 tcaaggatgattacgatggtgg 161



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>ref|XM_515086.1| PREDICTED: Pan troglodytes similar to KIAA0542 protein (LOC458771),
            mRNA
          Length = 2271

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 428  atccattccttttgccttag 447
            ||||||||||||||||||||
Sbjct: 1788 atccattccttttgccttag 1807



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>ref|XM_675783.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7606.2), mRNA
          Length = 2622

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 268  agtcggcaatagccttcttg 287
            ||||||||||||||||||||
Sbjct: 1489 agtcggcaatagccttcttg 1470



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>gb|AY386314.1| Bacillus methanolicus strain MGA3 plasmid pBM19, complete sequence
          Length = 19167

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   aattatccattccttttgcc 443
             ||||||||||||||||||||
Sbjct: 13234 aattatccattccttttgcc 13253



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>ref|XM_534317.2| PREDICTED: Canis familiaris similar to signal sequence receptor,
            gamma, transcript variant 1 (LOC477124), mRNA
          Length = 1112

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 12   atttgaaataactcacagtt 31
            ||||||||||||||||||||
Sbjct: 1093 atttgaaataactcacagtt 1112



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>emb|AL096768.7|HSJ858B16 Human DNA sequence from clone RP5-858B16 on chromosome 22 Contains
           the 3' end of the gene for homolog of yeast Sfi1 (SFI1),
           the 3' end of the PISD gene for Phosphatidylserine
           decarboxylase and a CpG isalnd, complete sequence
          Length = 36676

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 atccattccttttgccttag 447
           ||||||||||||||||||||
Sbjct: 166 atccattccttttgccttag 185



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>gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   acctccttataggaggaggc 316
             ||||||||||||||||||||
Sbjct: 75195 acctccttataggaggaggc 75214



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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   cagatcctcagccccaagcc 183
             ||||||||||||||||||||
Sbjct: 99977 cagatcctcagccccaagcc 99996



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>gb|AC161624.4| Pan troglodytes BAC clone CH251-149E7 from chromosome unknown, complete
              sequence
          Length = 180132

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 428    atccattccttttgccttag 447
              ||||||||||||||||||||
Sbjct: 116151 atccattccttttgccttag 116170



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>gb|DP000042.1| Lemur catta target 106 genomic scaffold
          Length = 452647

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     acaatttgaaataactcaca 28
             ||||||||||||||||||||
Sbjct: 65833 acaatttgaaataactcaca 65814



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>emb|BX323560.16| Zebrafish DNA sequence from clone DKEY-265E15 in linkage group 4,
            complete sequence
          Length = 190574

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 143  gtcaatcttcagaacaaaac 162
            ||||||||||||||||||||
Sbjct: 1770 gtcaatcttcagaacaaaac 1751



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>emb|BX465196.11| Mouse DNA sequence from clone RP23-459K15 on chromosome X, complete
             sequence
          Length = 184607

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   cttgtaattatccattcctt 438
             ||||||||||||||||||||
Sbjct: 10848 cttgtaattatccattcctt 10829



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 94       ccattttgttcaatcgatga 113
                ||||||||||||||||||||
Sbjct: 19651872 ccattttgttcaatcgatga 19651853



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>gb|AC010744.7| Homo sapiens BAC clone RP11-548D17 from 2, complete sequence
          Length = 186687

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      taaaacaatttgaaataact 24
              ||||||||||||||||||||
Sbjct: 139960 taaaacaatttgaaataact 139979



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>gb|AC009480.4| Homo sapiens BAC clone RP11-295N18 from 2, complete sequence
          Length = 188353

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      aaacaatttgaaataactca 26
              ||||||||||||||||||||
Sbjct: 139790 aaacaatttgaaataactca 139771



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>dbj|AK105279.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B08, full
            insert sequence
          Length = 2043

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 94   ccattttgttcaatcgatga 113
            ||||||||||||||||||||
Sbjct: 1407 ccattttgttcaatcgatga 1388



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 94       ccattttgttcaatcgatga 113
                ||||||||||||||||||||
Sbjct: 19578086 ccattttgttcaatcgatga 19578067



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>emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb0078B20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 133659

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    ccattttgttcaatcgatga 113
             ||||||||||||||||||||
Sbjct: 75121 ccattttgttcaatcgatga 75140



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>gb|AC140983.4| Mus musculus BAC clone RP23-167M17 from 18, complete sequence
          Length = 193004

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    agcctatatttctcactact 199
              ||||||||||||||||||||
Sbjct: 161027 agcctatatttctcactact 161008



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>emb|AL691445.21| Mouse DNA sequence from clone RP23-67G3 on chromosome X, complete
              sequence
          Length = 189233

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 419    cttgtaattatccattcctt 438
              ||||||||||||||||||||
Sbjct: 120796 cttgtaattatccattcctt 120815



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>emb|AL845304.4| Mouse DNA sequence from clone RP23-184H6 on chromosome X, complete
             sequence
          Length = 160065

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   cttgtaattatccattcctt 438
             ||||||||||||||||||||
Sbjct: 34928 cttgtaattatccattcctt 34909



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>emb|AL592243.14| Mouse DNA sequence from clone RP23-101B24 on chromosome 1, complete
              sequence
          Length = 193810

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      atagtaaaacaatttgaaataact 24
              |||||||||| |||||||||||||
Sbjct: 125228 atagtaaaactatttgaaataact 125251



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>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete
             sequence
          Length = 165720

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   gcatttttcccagttttctc 364
             ||||||||||||||||||||
Sbjct: 56551 gcatttttcccagttttctc 56532


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,659,736
Number of Sequences: 3902068
Number of extensions: 3659736
Number of successful extensions: 63609
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63468
Number of HSP's gapped (non-prelim): 141
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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