ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast63a06 |
|---|---|
| Clone Library Name | barley_pub |
>PHF2_HUMAN (O75151) PHD finger protein 2 (GRC5)| Length = 1101 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVAENGNANGVKNENSHE-STGES-DEKQVQ 296 C DWFH +C+G +EA ++ + C C +G + K H+ G++ D K VQ Sbjct: 26 CKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLKKKRTWHKHGPGQAPDVKPVQ 83
>PHF2_MOUSE (Q9WTU0) PHD finger protein 2 (GRC5)| Length = 1096 Score = 38.1 bits (87), Expect = 0.011 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVAENGNANGVKNENSHE 329 C DWFH +C+G +EA ++ + C C +G + K H+ Sbjct: 26 CKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLKKKRTWHK 70
>K1718_MOUSE (Q3UWM4) Protein KIAA1718| Length = 940 Score = 38.1 bits (87), Expect = 0.011 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVAENGNANGVKNENSH 332 C DWFH +C+G A ++ + C C A +G++ K N H Sbjct: 58 CKDWFHGSCVGVEEHHAVDIDLYHCPDCAALHGSSLMKKRRNWH 101
>K1718_HUMAN (Q6ZMT4) Protein KIAA1718| Length = 941 Score = 37.0 bits (84), Expect = 0.025 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVAENGNANGVKNENSH 332 C DWFH +C+G A ++ + C C +G++ K N H Sbjct: 58 CKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWH 101
>TCF19_PIG (Q9TSV4) Transcription factor 19 (Transcription factor SC1)| Length = 346 Score = 36.2 bits (82), Expect = 0.043 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGC 380 C WFH AC+G +I+ AK+ + F C GC Sbjct: 314 CDTWFHVACVGCSIQAAKEAD-FRCPGC 340
>PHF8_MOUSE (Q80TJ7) PHD finger protein 8| Length = 1023 Score = 34.7 bits (78), Expect = 0.12 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVAENGNANGVKNENSHESTGESDEK 305 C DWFH +C+G ++A ++ + C C +G + K S S G + K Sbjct: 26 CQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKKRRGS--SKGHDNHK 76
>TCF19_PANTR (Q7YR48) Transcription factor 19 (Transcription factor SC1)| Length = 345 Score = 34.7 bits (78), Expect = 0.12 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVA 374 C WFH AC+G +I+ A++ + F C GC A Sbjct: 313 CDVWFHVACVGCSIQAAREAD-FRCPGCRA 341
>TCF19_MACMU (Q5TM48) Transcription factor 19| Length = 345 Score = 34.7 bits (78), Expect = 0.12 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVA 374 C WFH AC+G +I+ A++ + F C GC A Sbjct: 313 CDVWFHVACVGCSIQAAREAD-FRCPGCRA 341
>TCF19_HUMAN (Q9Y242) Transcription factor 19 (Transcription factor SC1)| Length = 345 Score = 34.7 bits (78), Expect = 0.12 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVA 374 C WFH AC+G +I+ A++ + F C GC A Sbjct: 313 CDVWFHVACVGCSIQAAREAD-FRCPGCRA 341
>JHD1_DEBHA (Q6BXJ4) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 514 Score = 34.7 bits (78), Expect = 0.12 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVAENG 365 C+ WFH +C+ E L ++ CEGC +G Sbjct: 32 CNQWFHASCLKIPKIEVNNLHSYHCEGCSKSHG 64
>PHF3_HUMAN (Q92576) PHD finger protein 3| Length = 2039 Score = 34.7 bits (78), Expect = 0.12 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKL----ENFTCEGCVAENGNANGVKNENSHES 326 C DWFH C+G ++ +A+++ + + C C AE + + ++ E+ Sbjct: 738 CDDWFHGDCVGLSLSQAQQMGEEDKEYVCVKCCAEEDKKTEILDPDTLEN 787
>PHF8_HUMAN (Q9UPP1) PHD finger protein 8| Length = 1060 Score = 34.3 bits (77), Expect = 0.16 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVAENGNANGVKNENSHESTGESDEKQVQ 296 C DWFH +C+G ++A ++ + C C +G + K S + K V+ Sbjct: 62 CQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKKRRGSSKGHDTHKGKPVK 117
>MSC1_SCHPO (Q9UT79) Multicopy suppressor of chk1 protein 1| Length = 1588 Score = 33.9 bits (76), Expect = 0.21 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVAENG 365 C +WFH C+G + L N+ C C ++ G Sbjct: 1475 CLEWFHYECVGLSSDIVSTLSNYACPDCCSKEG 1507
>CXCC1_MOUSE (Q9CWW7) CpG-binding protein (PHD finger and CXXC domain-containing| protein 1) (CXXC finger protein 1) Length = 660 Score = 32.0 bits (71), Expect = 0.80 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGC 380 C++WFH CI T K AK + + C C Sbjct: 46 CNEWFHGDCIRITEKMAKAIREWYCREC 73
>CXCC1_HUMAN (Q9P0U4) CpG-binding protein (PHD finger and CXXC domain-containing| protein 1) (CXXC finger protein 1) Length = 656 Score = 32.0 bits (71), Expect = 0.80 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGC 380 C++WFH CI T K AK + + C C Sbjct: 46 CNEWFHGDCIRITEKMAKAIREWYCREC 73
>JHD1_ASPFU (Q4WHB7) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 1418 Score = 31.6 bits (70), Expect = 1.0 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = -1 Query: 463 CSDWFHPACIG-KTIKEAKKLENFTCEGCVAENGNANGVKNEN 338 C WFH C G K +E + ++ F C C +G V+ + Sbjct: 360 CKQWFHIVCAGFKNDREIRTVDKFICRRCRPIHGQTTFVRKSS 402
>JHD1_EMENI (Q5AW75) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 1407 Score = 31.6 bits (70), Expect = 1.0 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -1 Query: 463 CSDWFHPACIG-KTIKEAKKLENFTCEGCVAENGNANGVKNEN 338 C WFH C G K +E + ++ F C+ C +G V+ + Sbjct: 351 CKRWFHIVCAGFKNDRETRTVDKFICKTCRPIHGQTTFVRKSS 393
>LID2_SCHPO (Q9HDV4) Lid2 complex component lid2 (Lid2C component lid2)| Length = 1513 Score = 31.2 bits (69), Expect = 1.4 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGC 380 C +W+H C+ + K+ ++ E FTC C Sbjct: 1115 CHEWYHAKCLKMSKKKLRQDEKFTCPIC 1142
>RSRC1_MOUSE (Q9DBU6) Arginine/serine-rich coiled coil protein 1| Length = 334 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%) Frame = +3 Query: 60 RRKKEERKIMTPSNRTGPHGYAKSQTGRLPDSDSR---RDSQYR 182 +RKK+ R+ + S+ + Y++ + GR P SDSR RD Q R Sbjct: 15 KRKKKHRRRSSSSSSSDSRTYSRKKGGRRPRSDSRSWSRDRQLR 58
>JAD1A_HUMAN (P29375) Jumonji/ARID domain-containing protein 1A| (Retinoblastoma-binding protein 2) (RBBP-2) Length = 1722 Score = 31.2 bits (69), Expect = 1.4 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVAENG 365 C +WFH C+G + + A+ E++ C C + G Sbjct: 1664 CDEWFHRVCVGVSPEMAEN-EDYICINCAKKQG 1695
>MLO2_SCHPO (Q09329) Protein mlo2| Length = 329 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 5/33 (15%) Frame = -1 Query: 463 CSDWFHPACIGKT-----IKEAKKLENFTCEGC 380 C DWFH C+ KT I +A+ E C C Sbjct: 144 CEDWFHEKCLQKTNKGIAIPDAETFEWLVCSEC 176
>DIDO1_MOUSE (Q8C9B9) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (Fragments) Length = 1956 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/51 (29%), Positives = 24/51 (47%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCVAENGNANGVKNENSHESTGESD 311 C +WFH C+G + + LE E + N V++E + +T E D Sbjct: 285 CEEWFHGDCVGISEARGRLLER-NGEDYICPNCTILQVQDETNGSATDEQD 334
>LEA11_HELAN (P46515) 11 kDa late embryogenesis abundant protein (DS11)| Length = 104 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 6 QERTFKLTHHSPSRHNGGRRKKEERK 83 QE+ K+T H P + R KKEERK Sbjct: 34 QEKGEKMTAHDPMQKEMAREKKEERK 59
>STS3_ARATH (P92976) Strictosidine synthase 3 precursor (EC 4.3.3.2) (SS-3)| Length = 329 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +3 Query: 63 RKKEERKIMTPSNRTGPHGYAKSQTGR 143 +K +K+ P NRTGP +A TG+ Sbjct: 25 KKSSFQKLPVPGNRTGPEAFAFDSTGK 51
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 28.9 bits (63), Expect = 6.8 Identities = 9/30 (30%), Positives = 16/30 (53%) Frame = -1 Query: 466 ECSDWFHPACIGKTIKEAKKLENFTCEGCV 377 +CS +HP C+ I + L+ + C C+ Sbjct: 1124 QCSQCYHPYCVNSKITKVMLLKGWRCVECI 1153
>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding| SR-like protein RA4) (Fragment) Length = 1048 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +2 Query: 26 HSP*SKSTQRGAKEKRREKNNDSL*QDRS--TWICKVANW 139 HSP S+S +R +EK RE+ L Q +S +C W Sbjct: 386 HSPRSRSQERRDREKERERRQKGLPQIKSETASVCSTTLW 425
>KUP1_GEOSL (Q74AK4) Probable potassium transport system protein kup 1| Length = 631 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +1 Query: 136 LADCQTQTLEETPNTGSFYIKLETAMYIHRITCMKRWR 249 L +C+ L P T +FY+ ET + +++ M WR Sbjct: 560 LRECEPLGLVTDPETTTFYLGRETLIPTEKVSGMPHWR 597
>CN130_MOUSE (Q8BU04) Protein C14orf130 homolog| Length = 425 Score = 28.5 bits (62), Expect = 8.9 Identities = 9/29 (31%), Positives = 14/29 (48%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCV 377 C DWFH +G E+ + C+ C+ Sbjct: 158 CEDWFHGRHLGAIPPESGDFQEMVCQACM 186
>CN130_HUMAN (Q8N806) Protein C14orf130| Length = 425 Score = 28.5 bits (62), Expect = 8.9 Identities = 9/29 (31%), Positives = 14/29 (48%) Frame = -1 Query: 463 CSDWFHPACIGKTIKEAKKLENFTCEGCV 377 C DWFH +G E+ + C+ C+ Sbjct: 158 CEDWFHGRHLGAIPPESGDFQEMVCQACM 186 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,543,891 Number of Sequences: 219361 Number of extensions: 911936 Number of successful extensions: 2768 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2764 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
