ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast62h02 |
|---|---|
| Clone Library Name | barley_pub |
>NIP7_RAT (Q9WV50) 60S ribosome subunit biogenesis protein NIP7 homolog| (PEachy) (KD93) Length = 180 Score = 71.2 bits (173), Expect = 9e-13 Identities = 33/47 (70%), Positives = 37/47 (78%) Frame = -1 Query: 429 VMSMADVPLGFGVAARGAQDCRKADTNAVVVLHQSDAGEYLRKEEEL 289 V SMADVPLGFGVAA+ QDCRK D A+VV HQ+D GEY+R EE L Sbjct: 133 VYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYIRHEETL 179
>NIP7_MOUSE (Q9CXK8) 60S ribosome subunit biogenesis protein NIP7 homolog| (PEachy) (KD93) Length = 180 Score = 70.5 bits (171), Expect = 2e-12 Identities = 32/47 (68%), Positives = 37/47 (78%) Frame = -1 Query: 429 VMSMADVPLGFGVAARGAQDCRKADTNAVVVLHQSDAGEYLRKEEEL 289 V SMAD+PLGFGVAA+ QDCRK D A+VV HQ+D GEY+R EE L Sbjct: 133 VYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179
>NIP7_HUMAN (Q9Y221) 60S ribosome subunit biogenesis protein NIP7 homolog| (KD93) Length = 180 Score = 70.5 bits (171), Expect = 2e-12 Identities = 32/47 (68%), Positives = 37/47 (78%) Frame = -1 Query: 429 VMSMADVPLGFGVAARGAQDCRKADTNAVVVLHQSDAGEYLRKEEEL 289 V SMAD+PLGFGVAA+ QDCRK D A+VV HQ+D GEY+R EE L Sbjct: 133 VYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179
>NIP7_YEAST (Q08962) 60S ribosome subunit biogenesis protein NIP7| Length = 181 Score = 49.3 bits (116), Expect = 4e-06 Identities = 22/47 (46%), Positives = 29/47 (61%) Frame = -1 Query: 429 VMSMADVPLGFGVAARGAQDCRKADTNAVVVLHQSDAGEYLRKEEEL 289 V +M DVPLGFGV+A+ + R +V Q+D GEYLR E+ L Sbjct: 133 VFAMNDVPLGFGVSAKSTSESRNMQPTGIVAFRQADIGEYLRDEDTL 179
>HISX_STAAW (P63954) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 416 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 4/35 (11%) Frame = +2 Query: 35 SLLHISRDTMQ*LPDKLQH----DKIYSHQTSALL 127 +++H+S+DT + + D QH + +Y+HQ S L+ Sbjct: 379 TVIHLSKDTFEQIADSAQHIAHVEALYNHQQSILI 413
>HISX_STAAN (P63953) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 416 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 4/35 (11%) Frame = +2 Query: 35 SLLHISRDTMQ*LPDKLQH----DKIYSHQTSALL 127 +++H+S+DT + + D QH + +Y+HQ S L+ Sbjct: 379 TVIHLSKDTFEQIADSAQHIAHVEALYNHQQSILI 413
>HISX_STAAM (P63952) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 416 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 4/35 (11%) Frame = +2 Query: 35 SLLHISRDTMQ*LPDKLQH----DKIYSHQTSALL 127 +++H+S+DT + + D QH + +Y+HQ S L+ Sbjct: 379 TVIHLSKDTFEQIADSAQHIAHVEALYNHQQSILI 413
>HISX_STAAB (Q2YZB4) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 416 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 4/35 (11%) Frame = +2 Query: 35 SLLHISRDTMQ*LPDKLQH----DKIYSHQTSALL 127 +++H+S+DT + + D QH + +Y+HQ S L+ Sbjct: 379 TVIHLSKDTFEQIADSAQHIAHVEALYNHQQSILI 413
>HISX_STAAS (Q6G5Z7) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 418 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 4/35 (11%) Frame = +2 Query: 35 SLLHISRDTMQ*LPDKLQH----DKIYSHQTSALL 127 +++H+S+DT + + D QH + +Y+HQ S L+ Sbjct: 381 TVIHLSKDTFEQIADSAQHIAHVEALYNHQQSILI 415
>HISX_STAAC (Q5HCL9) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 418 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 4/35 (11%) Frame = +2 Query: 35 SLLHISRDTMQ*LPDKLQH----DKIYSHQTSALL 127 +++H+S+DT + + D QH + +Y+HQ S L+ Sbjct: 381 TVIHLSKDTFEQIADSAQHIAHVEALYNHQQSILI 415
>HISX_STAAR (Q6GDC6) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 418 Score = 28.9 bits (63), Expect = 5.4 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%) Frame = +2 Query: 35 SLLHISRDTMQ*LPDKLQH----DKIYSHQTSALL 127 +++H+S+DT + D QH + +Y+HQ S L+ Sbjct: 381 TVIHLSKDTFDQIADSAQHIAHVEALYNHQQSILI 415
>FOSB_BACC1 (Q739M9) Metallothiol transferase fosB (EC 2.5.1.-) (Fosfomycin| resistance protein) Length = 138 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -2 Query: 167 IKGKEKRMSDCSRVVEQMSDGYKF-YHAVAYQEATALYR 54 +KG+E+ + DC + DG+KF +H+ Q+ YR Sbjct: 91 LKGRERDVRDCESIYFVDPDGHKFEFHSGTLQDRLNYYR 129
>TOP1_MYCPN (P78032) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 711 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Frame = -2 Query: 248 PSMVVITDHLCLQSVCSSSTILYSAVFIKGKEKRMSDCSRV---VEQMSDGYKFY 93 P+ + IT + ++ +LY ++I+ M+DC + + ++DG KFY Sbjct: 394 PTDINITPEMVKNAIKKDEFLLYRLIWIRTVASLMADCKKSHTHIRFINDGNKFY 448
>MEF2B_HUMAN (Q02080) Myocyte-specific enhancer factor 2B (Serum response| factor-like protein 2) (XMEF2) (RSRFR2) Length = 365 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 8/32 (25%) Frame = -2 Query: 425 CPWPTCPSGLGSP--------PGARRTAGRPT 354 CPWPT G SP PG R G PT Sbjct: 323 CPWPTAGPGRRSPGGTSPERSPGTARARGDPT 354
>FOSB_BACHK (Q6HJT7) Metallothiol transferase fosB (EC 2.5.1.-) (Fosfomycin| resistance protein) Length = 138 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -2 Query: 167 IKGKEKRMSDCSRVVEQMSDGYKF-YHAVAYQEATALYR 54 ++G+E+ + DC + DG+KF +H+ QE YR Sbjct: 91 LQGRERDVRDCESIYIVDPDGHKFEFHSGTLQERLNYYR 129
>FOSB1_BACAN (Q81RK2) Metallothiol transferase fosB 1 (EC 2.5.1.-) (Fosfomycin| resistance protein 1) Length = 138 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -2 Query: 167 IKGKEKRMSDCSRVVEQMSDGYKF-YHAVAYQEATALYR 54 ++G+E+ + DC + DG+KF +H+ QE YR Sbjct: 91 LQGRERDVRDCESIYFVDPDGHKFEFHSGTLQERLNYYR 129 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,192,833 Number of Sequences: 219361 Number of extensions: 1047269 Number of successful extensions: 3568 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3045 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3568 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
