ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast62h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
2dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
3ref|XM_479456.1| Oryza sativa (japonica cultivar-group), mRNA 165 1e-37
4ref|XM_506556.1| PREDICTED Oryza sativa (japonica cultivar-group... 165 1e-37
5dbj|AK102921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 1e-37
6dbj|AK060349.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 1e-37
7emb|CR675478.1| Tetraodon nigroviridis full-length cDNA 46 0.093
8gb|AC170187.2| Mus musculus BAC clone RP23-320B10 from chromosom... 42 1.5
9emb|CR698614.2|CNS0G202 Tetraodon nigroviridis full-length cDNA 42 1.5
10emb|CR677519.2|CNS0FLQI Tetraodon nigroviridis full-length cDNA 42 1.5
11emb|CR657592.2|CNS0F6DA Tetraodon nigroviridis full-length cDNA 42 1.5
12ref|XM_678215.1| PREDICTED: Danio rerio similar to protein kinas... 42 1.5
13gb|AC097709.3| Homo sapiens BAC clone RP11-19B4 from 4, complete... 42 1.5
14emb|CR354611.10| Zebrafish DNA sequence from clone CH211-249B21 ... 42 1.5
15gb|AC144949.5| Mus musculus BAC clone RP23-136C19 from chromosom... 42 1.5
16emb|BX004889.8| Zebrafish DNA sequence from clone DKEY-65P15 in ... 42 1.5
17gb|AC174767.1| Gasterosteus aculeatus chromosome VMRC28-49C03, c... 42 1.5
18ref|NM_197441.1| Oryza sativa (japonica cultivar-group) cytochro... 40 5.8
19gb|AC091677.12| Mus musculus chromosome 18, clone RP23-131E5, co... 40 5.8
20gb|BC064688.1| Xenopus laevis hypothetical protein MGC69056, mRN... 40 5.8
21gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.8
22gb|AC157807.4| Mus musculus chromosome 1, clone RP24-363O2, comp... 40 5.8
23emb|BX897699.1| Bartonella henselae strain Houston-1, complete g... 40 5.8
24dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
25gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complet... 40 5.8
26gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 gen... 40 5.8
27gb|AC102242.10| Mus musculus chromosome 1, clone RP24-141F9, com... 40 5.8
28emb|BX842667.2| Mouse DNA sequence from clone RP24-319D9 on chro... 40 5.8
29gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
30emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 5.8
31dbj|AP006692.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.8
32emb|AL117187.7|CNS01DRD Human chromosome 14 DNA sequence BAC R-7... 40 5.8 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  167 bits (84), Expect = 4e-38
 Identities = 135/152 (88%)
 Strand = Plus / Minus

                                                                            
Query: 278      tcacctcacatgagctcctcctccttgcggaggtactcgccggcgtcggactggtggagc 337
                ||||||||||||||||||||||||  ||||||||||||||| ||||| |||||||| |||
Sbjct: 28299634 tcacctcacatgagctcctcctcccggcggaggtactcgcctgcgtcagactggtgcagc 28299575

                                                                            
Query: 338      accaccacagcgttggtgtcggccttcctgcagtcctgcgcgcccctggcggcgacccca 397
                || || || ||||||||||||||||||||||||||||||||   |||||||||||  || 
Sbjct: 28299574 acaacgacggcgttggtgtcggccttcctgcagtcctgcgccgacctggcggcgatgccg 28299515

                                                
Query: 398      aacccgaggggcacgtcggccatggacatgac 429
                || ||||| || ||||||||||||||||||||
Sbjct: 28299514 aagccgagcgggacgtcggccatggacatgac 28299483
to top
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0470D12
          Length = 157248

 Score =  167 bits (84), Expect = 4e-38
 Identities = 135/152 (88%)
 Strand = Plus / Minus

                                                                         
Query: 278   tcacctcacatgagctcctcctccttgcggaggtactcgccggcgtcggactggtggagc 337
             ||||||||||||||||||||||||  ||||||||||||||| ||||| |||||||| |||
Sbjct: 25197 tcacctcacatgagctcctcctcccggcggaggtactcgcctgcgtcagactggtgcagc 25138

                                                                         
Query: 338   accaccacagcgttggtgtcggccttcctgcagtcctgcgcgcccctggcggcgacccca 397
             || || || ||||||||||||||||||||||||||||||||   |||||||||||  || 
Sbjct: 25137 acaacgacggcgttggtgtcggccttcctgcagtcctgcgccgacctggcggcgatgccg 25078

                                             
Query: 398   aacccgaggggcacgtcggccatggacatgac 429
             || ||||| || ||||||||||||||||||||
Sbjct: 25077 aagccgagcgggacgtcggccatggacatgac 25046
to top
>ref|XM_479456.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 929

 Score =  165 bits (83), Expect = 1e-37
 Identities = 134/151 (88%)
 Strand = Plus / Minus

                                                                       
Query: 279 cacctcacatgagctcctcctccttgcggaggtactcgccggcgtcggactggtggagca 338
           |||||||||||||||||||||||  ||||||||||||||| ||||| |||||||| ||||
Sbjct: 637 cacctcacatgagctcctcctcccggcggaggtactcgcctgcgtcagactggtgcagca 578

                                                                       
Query: 339 ccaccacagcgttggtgtcggccttcctgcagtcctgcgcgcccctggcggcgaccccaa 398
           | || || ||||||||||||||||||||||||||||||||   |||||||||||  || |
Sbjct: 577 caacgacggcgttggtgtcggccttcctgcagtcctgcgccgacctggcggcgatgccga 518

                                          
Query: 399 acccgaggggcacgtcggccatggacatgac 429
           | ||||| || ||||||||||||||||||||
Sbjct: 517 agccgagcgggacgtcggccatggacatgac 487
to top
>ref|XM_506556.1| PREDICTED Oryza sativa (japonica cultivar-group), P0470D12.109 mRNA
          Length = 931

 Score =  165 bits (83), Expect = 1e-37
 Identities = 134/151 (88%)
 Strand = Plus / Minus

                                                                       
Query: 279 cacctcacatgagctcctcctccttgcggaggtactcgccggcgtcggactggtggagca 338
           |||||||||||||||||||||||  ||||||||||||||| ||||| |||||||| ||||
Sbjct: 639 cacctcacatgagctcctcctcccggcggaggtactcgcctgcgtcagactggtgcagca 580

                                                                       
Query: 339 ccaccacagcgttggtgtcggccttcctgcagtcctgcgcgcccctggcggcgaccccaa 398
           | || || ||||||||||||||||||||||||||||||||   |||||||||||  || |
Sbjct: 579 caacgacggcgttggtgtcggccttcctgcagtcctgcgccgacctggcggcgatgccga 520

                                          
Query: 399 acccgaggggcacgtcggccatggacatgac 429
           | ||||| || ||||||||||||||||||||
Sbjct: 519 agccgagcgggacgtcggccatggacatgac 489
to top
>dbj|AK102921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114C10, full
           insert sequence
          Length = 931

 Score =  165 bits (83), Expect = 1e-37
 Identities = 134/151 (88%)
 Strand = Plus / Minus

                                                                       
Query: 279 cacctcacatgagctcctcctccttgcggaggtactcgccggcgtcggactggtggagca 338
           |||||||||||||||||||||||  ||||||||||||||| ||||| |||||||| ||||
Sbjct: 639 cacctcacatgagctcctcctcccggcggaggtactcgcctgcgtcagactggtgcagca 580

                                                                       
Query: 339 ccaccacagcgttggtgtcggccttcctgcagtcctgcgcgcccctggcggcgaccccaa 398
           | || || ||||||||||||||||||||||||||||||||   |||||||||||  || |
Sbjct: 579 caacgacggcgttggtgtcggccttcctgcagtcctgcgccgacctggcggcgatgccga 520

                                          
Query: 399 acccgaggggcacgtcggccatggacatgac 429
           | ||||| || ||||||||||||||||||||
Sbjct: 519 agccgagcgggacgtcggccatggacatgac 489
to top
>dbj|AK060349.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-F05, full
           insert sequence
          Length = 929

 Score =  165 bits (83), Expect = 1e-37
 Identities = 134/151 (88%)
 Strand = Plus / Minus

                                                                       
Query: 279 cacctcacatgagctcctcctccttgcggaggtactcgccggcgtcggactggtggagca 338
           |||||||||||||||||||||||  ||||||||||||||| ||||| |||||||| ||||
Sbjct: 637 cacctcacatgagctcctcctcccggcggaggtactcgcctgcgtcagactggtgcagca 578

                                                                       
Query: 339 ccaccacagcgttggtgtcggccttcctgcagtcctgcgcgcccctggcggcgaccccaa 398
           | || || ||||||||||||||||||||||||||||||||   |||||||||||  || |
Sbjct: 577 caacgacggcgttggtgtcggccttcctgcagtcctgcgccgacctggcggcgatgccga 518

                                          
Query: 399 acccgaggggcacgtcggccatggacatgac 429
           | ||||| || ||||||||||||||||||||
Sbjct: 517 agccgagcgggacgtcggccatggacatgac 487
to top
>emb|CR675478.1| Tetraodon nigroviridis full-length cDNA
          Length = 1673

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 397  aaacccgaggggcacgtcggccatgga 423
            |||||||||||||||||| ||||||||
Sbjct: 1012 aaacccgaggggcacgtctgccatgga 986
to top
>gb|AC170187.2| Mus musculus BAC clone RP23-320B10 from chromosome 19, complete sequence
          Length = 192550

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 70     gcttcctgataagctacagca 90
              |||||||||||||||||||||
Sbjct: 159852 gcttcctgataagctacagca 159832
to top
>emb|CR698614.2|CNS0G202 Tetraodon nigroviridis full-length cDNA
          Length = 675

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 395 ccaaacccgaggggcacgtcggccatgga 423
           ||||| |||||||||||||| ||||||||
Sbjct: 512 ccaaaaccgaggggcacgtctgccatgga 484
to top
>emb|CR677519.2|CNS0FLQI Tetraodon nigroviridis full-length cDNA
          Length = 675

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 395 ccaaacccgaggggcacgtcggccatgga 423
           ||||| |||||||||||||| ||||||||
Sbjct: 512 ccaaaaccgaggggcacgtctgccatgga 484
to top
>emb|CR657592.2|CNS0F6DA Tetraodon nigroviridis full-length cDNA
          Length = 649

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 395 ccaaacccgaggggcacgtcggccatgga 423
           ||||| |||||||||||||| ||||||||
Sbjct: 509 ccaaaaccgaggggcacgtctgccatgga 481
to top
>ref|XM_678215.1| PREDICTED: Danio rerio similar to protein kinase, lysine deficient 1
            (LOC555647), mRNA
          Length = 5560

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 249  aacacatctttcagcaccaca 269
            |||||||||||||||||||||
Sbjct: 1867 aacacatctttcagcaccaca 1887
to top
>gb|AC097709.3| Homo sapiens BAC clone RP11-19B4 from 4, complete sequence
          Length = 160741

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 60   caatgcagtagcttcctgata 80
            |||||||||||||||||||||
Sbjct: 6114 caatgcagtagcttcctgata 6134
to top
>emb|CR354611.10| Zebrafish DNA sequence from clone CH211-249B21 in linkage group 25,
             complete sequence
          Length = 81016

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 249   aacacatctttcagcaccaca 269
             |||||||||||||||||||||
Sbjct: 53197 aacacatctttcagcaccaca 53217
to top
>gb|AC144949.5| Mus musculus BAC clone RP23-136C19 from chromosome 19, complete
             sequence
          Length = 203311

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    gcttcctgataagctacagca 90
             |||||||||||||||||||||
Sbjct: 58151 gcttcctgataagctacagca 58131
to top
>emb|BX004889.8| Zebrafish DNA sequence from clone DKEY-65P15 in linkage group 25,
              complete sequence
          Length = 253422

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 249    aacacatctttcagcaccaca 269
              |||||||||||||||||||||
Sbjct: 206365 aacacatctttcagcaccaca 206345
to top
>gb|AC174767.1| Gasterosteus aculeatus chromosome VMRC28-49C03, complete sequence
          Length = 136807

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                              
Query: 249   aacacatctttcagc-accacagtcaaacatca 280
             ||||||||||||| | |||||||||||||||||
Sbjct: 78260 aacacatctttcaactaccacagtcaaacatca 78292
to top
>ref|NM_197441.1| Oryza sativa (japonica cultivar-group) cytochrome P450-like protein
           (OSJNBb0005J14.26), mRNA
          Length = 1551

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 306 ggaggtactcgccggcgtcg 325
           ||||||||||||||||||||
Sbjct: 673 ggaggtactcgccggcgtcg 654
to top
>gb|AC091677.12| Mus musculus chromosome 18, clone RP23-131E5, complete sequence
          Length = 222121

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 12     aggaaatgtatccattatcataat 35
              |||||||||||||||| |||||||
Sbjct: 161702 aggaaatgtatccattctcataat 161725
to top
>gb|BC064688.1| Xenopus laevis hypothetical protein MGC69056, mRNA (cDNA clone
           MGC:69056 IMAGE:4965627), complete cds
          Length = 7761

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 150 cttttccttgccctttatga 169
           ||||||||||||||||||||
Sbjct: 543 cttttccttgccctttatga 562
to top
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 318    cggcgtcggactggtggagcacca 341
              |||||||||||||||||| |||||
Sbjct: 989512 cggcgtcggactggtggatcacca 989489
to top
>gb|AC157807.4| Mus musculus chromosome 1, clone RP24-363O2, complete sequence
          Length = 165344

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    cctttatgaagactgcagaa 180
              ||||||||||||||||||||
Sbjct: 130862 cctttatgaagactgcagaa 130881
to top
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 90      atgataaaatttatagccat 109
               ||||||||||||||||||||
Sbjct: 1054985 atgataaaatttatagccat 1055004
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 306      ggaggtactcgccggcgtcg 325
                ||||||||||||||||||||
Sbjct: 19908973 ggaggtactcgccggcgtcg 19908992
to top
>gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complete sequence
          Length = 164706

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 264   accacagtcaaacatcacctcaca 287
             |||||||||||| |||||||||||
Sbjct: 16028 accacagtcaaatatcacctcaca 16051
to top
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete
             sequence
          Length = 116932

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   ggaggtactcgccggcgtcg 325
             ||||||||||||||||||||
Sbjct: 77070 ggaggtactcgccggcgtcg 77051
to top
>gb|AC102242.10| Mus musculus chromosome 1, clone RP24-141F9, complete sequence
          Length = 146925

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    cctttatgaagactgcagaa 180
              ||||||||||||||||||||
Sbjct: 142445 cctttatgaagactgcagaa 142464
to top
>emb|BX842667.2| Mouse DNA sequence from clone RP24-319D9 on chromosome 11, complete
             sequence
          Length = 92969

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   actgcacactgattgcaagc 217
             ||||||||||||||||||||
Sbjct: 21331 actgcacactgattgcaagc 21350
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 306      ggaggtactcgccggcgtcg 325
                ||||||||||||||||||||
Sbjct: 19920249 ggaggtactcgccggcgtcg 19920268
to top
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    ggaacacatctttcagcacc 266
              ||||||||||||||||||||
Sbjct: 694942 ggaacacatctttcagcacc 694961
to top
>dbj|AP006692.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT06K23, TM0391,
             complete sequence
          Length = 98505

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   acatcacctcacatgagctc 294
             ||||||||||||||||||||
Sbjct: 30722 acatcacctcacatgagctc 30703
to top
>emb|AL117187.7|CNS01DRD Human chromosome 14 DNA sequence BAC R-725G5 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 195835

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   cacctcacatgagctcctcc 298
             ||||||||||||||||||||
Sbjct: 79222 cacctcacatgagctcctcc 79203


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,031,331
Number of Sequences: 3902068
Number of extensions: 4031331
Number of successful extensions: 65923
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 65762
Number of HSP's gapped (non-prelim): 162
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top