>GEMI2_RAT (Q9QZP1) Survival of motor neuron protein-interacting protein 1|
           (SMN-interacting protein 1) (Component of gems 2)
           (Gemin-2)
          Length = 269

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 322 RCPPIRLCRGASRDRRAPQ*NVLLALVS 239
           RC  +RL  G+  D R P  N+L+ LVS
Sbjct: 229 RCSEVRLLVGSKDDERVPALNLLICLVS 256

>GEMI2_MOUSE (Q9CQQ4) Survival of motor neuron protein-interacting protein 1|
           (SMN-interacting protein 1) (Component of gems 2)
           (Gemin-2)
          Length = 269

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 322 RCPPIRLCRGASRDRRAPQ*NVLLALVS 239
           RC  +RL  G+  D R P  N+L+ LVS
Sbjct: 229 RCSEVRLLVGSKDDERVPALNLLICLVS 256

>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac|
          Length = 1120

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 195 PVSAVSGTTGLVQSGDTKASSTFY--CGARRSLDAPRHNRIGGQRKRSNKN 341
           P +A SG   + +SGD+     FY   G+ R+L    H R GG   RS+++
Sbjct: 832 PWNAESGAYNVTRSGDSYILVNFYTGVGSCRTLQMKAHYRNGGLFYRSSRD 882

>UL76_HCMVA (P16725) Protein UL76|
          Length = 325

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 175 FVPEITKGNRRFYLGIILCRSAPSCVL 95
           F PE+ K  RR ++ + L R  P CVL
Sbjct: 56  FPPELQKYRRRLFIEVRLSRRIPDCVL 82

>G156_PARPR (P13837) G surface protein, allelic form 156 precursor|
          Length = 2715

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
 Frame = -1

Query: 281  SSCSTIKCTTGFGVARLN*TCSARNSGHRCL------CVCSIRTRDHEGKPKILSGHYIV 120
            SSC+++K   G G      TCS   + + C       C   +          I       
Sbjct: 1019 SSCTSLK--DGTGCQEYKTTCSGYAATNNCATSGQGKCFFDVECLRFSNCASITG----T 1072

Query: 119  PISPFLCSTYRGGCGFAVPLLNCRHRLLTC*LFV 18
             ++  +C TY  GC   V    C+ +L TC L++
Sbjct: 1073 GLTTAICGTYDAGCVANVNGTACQEKLATCDLYL 1106

>HGP4_HAEIN (Q57408) Probable hemoglobin and hemoglobin-haptoglobin-binding|
           protein 4 precursor
          Length = 999

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 54  VQQRNGKPAPAPVCRTQEGADRHNIMPR*NLRFPFVISGTN 176
           V  RNG P    +   ++G  RH ++ + N  F  V SGTN
Sbjct: 393 VVDRNGDPVELKLVEDEQGQKRHQVVDKYNNPFS-VASGTN 432

>YM41_YEAST (Q03213) Hypothetical 79.4 kDa protein in ALD2-DDR48 intergenic|
           region
          Length = 719

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 276 RRSLDAPRHNRIGGQRKRSNKNCMSSSVN---HYRLGRSP 386
           RRSL   + N + G+RK   ++    ++N   HYR+ ++P
Sbjct: 584 RRSLHHKKSNSLNGRRKLHGESATKPNINSDLHYRILKAP 623

>NPC1_CAEEL (Q19127) Niemann-Pick C1 protein homolog 1 precursor|
          Length = 1383

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = -3

Query: 345  CNF--CSTASVAPQSGYAVGHRGIVVLHNKMYYWL 247
            C F  CS  S      YAVGH     L  +MY W+
Sbjct: 929  CTFPGCSDTSFGNIMNYAVGHTEQTYLSGEMYNWI 963

>MAGC1_HUMAN (O60732) Melanoma-associated antigen C1 (MAGE-C1 antigen)|
           (Cancer-testis antigen CT7)
          Length = 1142

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -3

Query: 177 HSYPRSRRETEDSIWALYCADQPLP----VFYIQGRVRVCRSSVELSTP 43
           H +P+S  + EDS+  LY    PL        +Q  V +C SS   S P
Sbjct: 593 HYFPQSPPQGEDSMSPLYFPQSPLQGEEFQSSLQSPVSICSSSTPSSLP 641

>ITB2_MOUSE (P11835) Integrin beta-2 precursor (Cell surface adhesion|
           glycoproteins LFA-1/CR3/P150,95 beta-subunit)
           (Complement receptor C3 beta-subunit) (CD18 antigen)
          Length = 771

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 293 GIEGSSCSTIKCTTGFGVARLN*TCSARNSGH----RCLC 186
           G EGS+C   + TTG   ARL   CS R  GH    RC+C
Sbjct: 568 GYEGSACQCQRSTTGCLNARLV-ECSGR--GHCQCNRCIC 604

>ILVD_SYNPX (Q7U763) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 557

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 192 APVSAVSGTTGLVQSGDT 245
           AP +AV GT GLVQ GD+
Sbjct: 482 APEAAVGGTIGLVQGGDS 499

>YWBM_BACSU (P39596) Hypothetical protein ywbM|
          Length = 385

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 198 VSAVSGTTGLVQSGDTKASSTFYCGAR 278
           V A    TG V+SGD + S T Y  AR
Sbjct: 166 VKATEAFTGAVKSGDIEKSKTLYAKAR 192

>Y062_BORBU (O51089) Hypothetical UPF0088 protein BB0062|
          Length = 238

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 259 VLLALVSPD*TKPVVPETADTGAYVFVAFVPEITKGNRRFYLGIILCRSAPSCVLHTGAG 80
           VL+ ++ P   K ++ E A  G Y  + F  E+T+   + YL   + ++   C  H  AG
Sbjct: 77  VLIGMIRPIVAKRIIKELASIGTYKIIFFNTELTE---KSYLNSKIFKN-NDCEKHLIAG 132

Query: 79  A 77
           A
Sbjct: 133 A 133

>RNE_ECOLI (P21513) Ribonuclease E (EC 3.1.4.-) (RNase E)|
          Length = 1061

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 276 RRSLDAPRHNRIGGQRKR 329
           RRS  +PRH R+ GQR+R
Sbjct: 796 RRSRRSPRHLRVSGQRRR 813

>CV013_MOUSE (Q8BZI6) Protein C22orf13 homolog|
          Length = 239

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 221 CSARNSGHRCLCVCSIRTRDHEGKPKILSGH 129
           C    SGHRC C    RT D++G   +L G+
Sbjct: 167 CCFTPSGHRCFC----RTPDYQGHFIVLRGY 193

>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch|
           1) [Contains: Notch 1 extracellular truncation; Notch 1
           intracellular domain]
          Length = 2531

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
 Frame = -1

Query: 224 TCSARNSGHRCLCV-------CSIRTRDHEGKPKILSGHYIVPISPFLCSTYRGGCG 75
           TC  +    +C+C+       C I T +    P + +G  +  I+ FLC   +G  G
Sbjct: 466 TCLDQIGEFQCICMPGYEGVYCEINTDECASSPCLHNGRCVDKINEFLCQCPKGFSG 522

>RT09_CAEEL (P34388) Probable 40S ribosomal protein S9, mitochondrial precursor|
          Length = 392

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -2

Query: 214 PETADTGAYVFVAFVPEI---TKGNRRFYLGIILCRSAPSCVLHTGAGAG 74
           P TA TG+ +F   +PE+      NRR+      C+   + V  T AG G
Sbjct: 223 PMTASTGSKLFGPAIPEVHVCAVTNRRYAEVTTRCKDTRATVKVTDAGKG 272


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,580,105
Number of Sequences: 219361
Number of extensions: 1452437
Number of successful extensions: 3604
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3598
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)