ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast62f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ABCG8_HUMAN (Q9H221) ATP-binding cassette sub-family G member 8 ... 28 9.2

>ABCG8_HUMAN (Q9H221) ATP-binding cassette sub-family G member 8 (Sterolin-2)|
          Length = 673

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 131 LNPAM*NLLVSWIAPGCVRVLAIKKALLLGFFYNKRSYSGQL 6
           L P + + L+ W+   C R++A+  A LL  F+    +S  L
Sbjct: 525 LQPFLLHFLLVWLVVFCCRIMALAAAALLPTFHMASFFSNAL 566


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,419,713
Number of Sequences: 219361
Number of extensions: 311028
Number of successful extensions: 851
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 80,573,946
effective HSP length: 20
effective length of database: 76,186,726
effective search space used: 1828481424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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