| Clone Name | rbast62b08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete cds Length = 1913 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 225 ggtagaggtgcagcggcaggcgtggcttggcgtgcagcaccagcggcttagcca 278 |||||||||||| ||||||||| |||| ||||||||||||||||||||| |||| Sbjct: 1741 ggtagaggtgcaccggcaggcgcggctgggcgtgcagcaccagcggcttggcca 1688 Score = 60.0 bits (30), Expect = 6e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 337 ccaggtgaagccatggaggagcctgccgaaaagcatgacggtcatggccgtgccgagc 394 |||||||||||| || |||||||||||||| ||||| ||| |||| ||||| |||||| Sbjct: 1629 ccaggtgaagccctgcaggagcctgccgaagagcatcacgctcatcgccgtcccgagc 1572
>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds Length = 660392 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ggaaagatgacaacaaactta 94 ||||||||||||||||||||| Sbjct: 656590 ggaaagatgacaacaaactta 656570
>ref|XM_961171.1| Plasmodium falciparum 3D7 hypothetical protein (PFF1365c) partial mRNA Length = 30864 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 16 attctccctaaataatattattattactc 44 ||||||||| |||| |||||||||||||| Sbjct: 27115 attctccctgaatattattattattactc 27087
>emb|CR382401.1| Plasmodium falciparum chromosome 6, complete sequence; segment 4/5 Length = 337203 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 16 attctccctaaataatattattattactc 44 ||||||||| |||| |||||||||||||| Sbjct: 81075 attctccctgaatattattattattactc 81103
>gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chromosome II, complete sequence Length = 358943 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 ataatattattattactcggaatca 51 |||||||| |||||||||||||||| Sbjct: 20567 ataatatttttattactcggaatca 20591
>gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome II, complete sequence Length = 350181 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 ataatattattattactcggaatca 51 |||||||| |||||||||||||||| Sbjct: 19100 ataatatttttattactcggaatca 19124
>gb|AC004518.1|AC004518 Homo sapiens chromosome 14, BAC CITB-135H17 containing the RAD51L1 gene, complete sequence Length = 123661 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ggaaagatgacaacaaactta 94 ||||||||||||||||||||| Sbjct: 16348 ggaaagatgacaacaaactta 16328
>emb|AL589168.3|CNS07EG1 Human chromosome 14 DNA sequence BAC R-108B17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 149805 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ggaaagatgacaacaaactta 94 ||||||||||||||||||||| Sbjct: 119198 ggaaagatgacaacaaactta 119218
>gb|AC151366.3| Aotus nancymaae clone CH258-105B22, complete sequence Length = 188026 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 aaaggataattctccctaaataat 31 |||||| ||||||||||||||||| Sbjct: 72188 aaaggagaattctccctaaataat 72211
>gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, complete sequence Length = 221436 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 acttattaatggatcaatat 109 |||||||||||||||||||| Sbjct: 145210 acttattaatggatcaatat 145191
>gb|AY555278.1| Mus musculus strain 129/SvJ chromosome 17 clone 522h13, complete sequence Length = 148334 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 ggcaaaaggataattctccctaaa 27 ||||||||||||||||||| |||| Sbjct: 58220 ggcaaaaggataattctccttaaa 58197
>gb|AC103357.10| Mus musculus chromosome 14, clone RP24-201I14, complete sequence Length = 143401 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 aagatgacaacaaacttatt 96 |||||||||||||||||||| Sbjct: 58446 aagatgacaacaaacttatt 58427
>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence Length = 264062 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 catggacatgagcagtagca 148 |||||||||||||||||||| Sbjct: 158347 catggacatgagcagtagca 158328
>gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome 1, complete sequence Length = 236342 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 catggacatgagcagtagca 148 |||||||||||||||||||| Sbjct: 135086 catggacatgagcagtagca 135067
>emb|CR318597.4| Zebrafish DNA sequence from clone CH211-151L13 in linkage group 21, complete sequence Length = 160229 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aaataatattattattactc 44 |||||||||||||||||||| Sbjct: 57149 aaataatattattattactc 57130
>gb|AC087456.3| Homo sapiens chromosome 15, clone RP11-26A13, complete sequence Length = 170945 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 aaaaggataattctccctaaataa 30 |||||||||||| ||||||||||| Sbjct: 122076 aaaaggataattttccctaaataa 122099
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gaagggaaagatgacaacaa 89 |||||||||||||||||||| Sbjct: 2025406 gaagggaaagatgacaacaa 2025425
>gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, complete sequence Length = 159230 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 aacttattaatggatcaata 108 |||||||||||||||||||| Sbjct: 15355 aacttattaatggatcaata 15374
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03 Length = 156709 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gaagggaaagatgacaacaa 89 |||||||||||||||||||| Sbjct: 154186 gaagggaaagatgacaacaa 154205
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gaagggaaagatgacaacaa 89 |||||||||||||||||||| Sbjct: 46268 gaagggaaagatgacaacaa 46287
>emb|BX119992.6| Zebrafish DNA sequence from clone CH211-225H9 in linkage group 20, complete sequence Length = 174275 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 taaataatattattattact 43 |||||||||||||||||||| Sbjct: 166091 taaataatattattattact 166072
>emb|AL773568.19| Mouse DNA sequence from clone RP23-59L23 on chromosome X, complete sequence Length = 158374 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gtgtgtgaagggaaagatga 83 |||||||||||||||||||| Sbjct: 26126 gtgtgtgaagggaaagatga 26145 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,492,135 Number of Sequences: 3902068 Number of extensions: 4492135 Number of successful extensions: 94592 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94481 Number of HSP's gapped (non-prelim): 111 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)