ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast62b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete... 76 1e-10
2gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L... 42 1.4
3ref|XM_961171.1| Plasmodium falciparum 3D7 hypothetical protein ... 42 1.4
4emb|CR382401.1| Plasmodium falciparum chromosome 6, complete seq... 42 1.4
5gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chr... 42 1.4
6gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. F... 42 1.4
7gb|AC004518.1|AC004518 Homo sapiens chromosome 14, BAC CITB-135H... 42 1.4
8emb|AL589168.3|CNS07EG1 Human chromosome 14 DNA sequence BAC R-1... 42 1.4
9gb|AC151366.3| Aotus nancymaae clone CH258-105B22, complete sequ... 40 5.4
10gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, co... 40 5.4
11gb|AY555278.1| Mus musculus strain 129/SvJ chromosome 17 clone 5... 40 5.4
12gb|AC103357.10| Mus musculus chromosome 14, clone RP24-201I14, c... 40 5.4
13gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, co... 40 5.4
14gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome ... 40 5.4
15emb|CR318597.4| Zebrafish DNA sequence from clone CH211-151L13 i... 40 5.4
16gb|AC087456.3| Homo sapiens chromosome 15, clone RP11-26A13, com... 40 5.4
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
18gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, comp... 40 5.4
19dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
20dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
21emb|BX119992.6| Zebrafish DNA sequence from clone CH211-225H9 in... 40 5.4
22emb|AL773568.19| Mouse DNA sequence from clone RP23-59L23 on chr... 40 5.4

>gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete cds
          Length = 1913

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                  
Query: 225  ggtagaggtgcagcggcaggcgtggcttggcgtgcagcaccagcggcttagcca 278
            |||||||||||| ||||||||| |||| ||||||||||||||||||||| ||||
Sbjct: 1741 ggtagaggtgcaccggcaggcgcggctgggcgtgcagcaccagcggcttggcca 1688



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 337  ccaggtgaagccatggaggagcctgccgaaaagcatgacggtcatggccgtgccgagc 394
            |||||||||||| || |||||||||||||| ||||| ||| |||| ||||| ||||||
Sbjct: 1629 ccaggtgaagccctgcaggagcctgccgaagagcatcacgctcatcgccgtcccgagc 1572



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>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds
          Length = 660392

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 74     ggaaagatgacaacaaactta 94
              |||||||||||||||||||||
Sbjct: 656590 ggaaagatgacaacaaactta 656570



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>ref|XM_961171.1| Plasmodium falciparum 3D7 hypothetical protein (PFF1365c) partial mRNA
          Length = 30864

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 16    attctccctaaataatattattattactc 44
             ||||||||| |||| ||||||||||||||
Sbjct: 27115 attctccctgaatattattattattactc 27087



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>emb|CR382401.1| Plasmodium falciparum chromosome 6, complete sequence; segment 4/5
          Length = 337203

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 16    attctccctaaataatattattattactc 44
             ||||||||| |||| ||||||||||||||
Sbjct: 81075 attctccctgaatattattattattactc 81103



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>gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chromosome II, complete
             sequence
          Length = 358943

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 27    ataatattattattactcggaatca 51
             |||||||| ||||||||||||||||
Sbjct: 20567 ataatatttttattactcggaatca 20591



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>gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
             chromosome II, complete sequence
          Length = 350181

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 27    ataatattattattactcggaatca 51
             |||||||| ||||||||||||||||
Sbjct: 19100 ataatatttttattactcggaatca 19124



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>gb|AC004518.1|AC004518 Homo sapiens chromosome 14, BAC CITB-135H17  containing the RAD51L1
             gene, complete sequence
          Length = 123661

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 74    ggaaagatgacaacaaactta 94
             |||||||||||||||||||||
Sbjct: 16348 ggaaagatgacaacaaactta 16328



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>emb|AL589168.3|CNS07EG1 Human chromosome 14 DNA sequence BAC R-108B17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 149805

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 74     ggaaagatgacaacaaactta 94
              |||||||||||||||||||||
Sbjct: 119198 ggaaagatgacaacaaactta 119218



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>gb|AC151366.3| Aotus nancymaae clone CH258-105B22, complete sequence
          Length = 188026

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 8     aaaggataattctccctaaataat 31
             |||||| |||||||||||||||||
Sbjct: 72188 aaaggagaattctccctaaataat 72211



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>gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, complete sequence
          Length = 221436

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     acttattaatggatcaatat 109
              ||||||||||||||||||||
Sbjct: 145210 acttattaatggatcaatat 145191



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>gb|AY555278.1| Mus musculus strain 129/SvJ chromosome 17 clone 522h13, complete
             sequence
          Length = 148334

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     ggcaaaaggataattctccctaaa 27
             ||||||||||||||||||| ||||
Sbjct: 58220 ggcaaaaggataattctccttaaa 58197



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>gb|AC103357.10| Mus musculus chromosome 14, clone RP24-201I14, complete sequence
          Length = 143401

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    aagatgacaacaaacttatt 96
             ||||||||||||||||||||
Sbjct: 58446 aagatgacaacaaacttatt 58427



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>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence
          Length = 264062

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    catggacatgagcagtagca 148
              ||||||||||||||||||||
Sbjct: 158347 catggacatgagcagtagca 158328



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>gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome 1, complete sequence
          Length = 236342

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    catggacatgagcagtagca 148
              ||||||||||||||||||||
Sbjct: 135086 catggacatgagcagtagca 135067



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>emb|CR318597.4| Zebrafish DNA sequence from clone CH211-151L13 in linkage group 21,
             complete sequence
          Length = 160229

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aaataatattattattactc 44
             ||||||||||||||||||||
Sbjct: 57149 aaataatattattattactc 57130



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>gb|AC087456.3| Homo sapiens chromosome 15, clone RP11-26A13, complete sequence
          Length = 170945

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 7      aaaaggataattctccctaaataa 30
              |||||||||||| |||||||||||
Sbjct: 122076 aaaaggataattttccctaaataa 122099



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 70      gaagggaaagatgacaacaa 89
               ||||||||||||||||||||
Sbjct: 2025406 gaagggaaagatgacaacaa 2025425



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>gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, complete sequence
          Length = 159230

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    aacttattaatggatcaata 108
             ||||||||||||||||||||
Sbjct: 15355 aacttattaatggatcaata 15374



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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0548D03
          Length = 156709

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     gaagggaaagatgacaacaa 89
              ||||||||||||||||||||
Sbjct: 154186 gaagggaaagatgacaacaa 154205



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>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    gaagggaaagatgacaacaa 89
             ||||||||||||||||||||
Sbjct: 46268 gaagggaaagatgacaacaa 46287



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>emb|BX119992.6| Zebrafish DNA sequence from clone CH211-225H9 in linkage group 20,
              complete sequence
          Length = 174275

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     taaataatattattattact 43
              ||||||||||||||||||||
Sbjct: 166091 taaataatattattattact 166072



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>emb|AL773568.19| Mouse DNA sequence from clone RP23-59L23 on chromosome X, complete
             sequence
          Length = 158374

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    gtgtgtgaagggaaagatga 83
             ||||||||||||||||||||
Sbjct: 26126 gtgtgtgaagggaaagatga 26145


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,492,135
Number of Sequences: 3902068
Number of extensions: 4492135
Number of successful extensions: 94592
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94481
Number of HSP's gapped (non-prelim): 111
length of query: 407
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 385
effective length of database: 17,147,199,772
effective search space: 6601671912220
effective search space used: 6601671912220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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