ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast62b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.37
2gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genom... 44 0.37
3gb|AC110792.3| Homo sapiens BAC clone RP11-571I18 from 4, comple... 44 0.37
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
5ref|XM_467243.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
6ref|XM_519771.1| PREDICTED: Pan troglodytes similar to hypotheti... 42 1.5
7gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.5
8ref|NM_191086.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
9gb|BT018781.1| Zea mays clone EL01N0526F09.d mRNA sequence 42 1.5
10gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.5
11gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genom... 42 1.5
12gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.5
13gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001... 42 1.5
14gb|DQ249181.1| Homo sapiens isolate 541CLS37 haplotype HLA-B0702... 42 1.5
15gb|DQ249180.1| Homo sapiens isolate 495CLS44 haplotype HLA-B5701... 42 1.5
16gb|DQ249179.1| Homo sapiens isolate 495CLS7 haplotype HLA-B3801/... 42 1.5
17gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B1501... 42 1.5
18gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B1402... 42 1.5
19gb|DQ249175.1| Homo sapiens isolate 144CLS7 haplotype HLA-B3801/... 42 1.5
20gb|DQ249174.1| Homo sapiens isolate 144CLS49 haplotype HLA-B0801... 42 1.5
21gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B1402... 42 1.5
22gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B0801... 42 1.5
23emb|CR938714.3| Human DNA sequence from clone DAMC-338G21 on chr... 42 1.5
24emb|AL773544.5| Human DNA sequence from clone DAQB-185I1 on chro... 42 1.5
25emb|AL662844.12| Human DNA sequence from clone XXbac-299F13 on c... 42 1.5
26emb|AL662867.5| Human DNA sequence from clone XXbac-34D1 on chro... 42 1.5
27emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.5
28emb|CR936880.3| Human DNA sequence from clone DAMC-257B19 on chr... 42 1.5
29emb|BX927139.8| Human DNA sequence from clone DAMA-72F24 on chro... 42 1.5
30emb|CR753819.5| Human DNA sequence from clone DADB-141O4 on chro... 42 1.5
31gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.5
32dbj|AB202103.1| Homo sapiens C6orf15, C6orf16, CDSN, C6orf17 gen... 42 1.5
33gb|AE005910.1| Caulobacter crescentus CB15 section 236 of 359 of... 42 1.5
34ref|XM_397369.2| PREDICTED: Apis mellifera similar to MGC80272 p... 42 1.5
35dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
37dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
38dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 42 1.5
39dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
40dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
41dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.5
42gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, comple... 42 1.5
43dbj|AK060695.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
44gb|U39958.1|ZMU39958 Zea mays NADP-malic enzyme root isoform mRN... 42 1.5
45gb|AY315822.1| Zea mays non-photosynthetic NADP-malic enzyme mRN... 42 1.5
46gb|AC004195.1|AC004195 Homo sapiens clone UWGC:y24c027 from 6p21... 42 1.5
47gb|AC006163.1|AC006163 Homo sapiens clone UWGC:y24c203 from 6p21... 42 1.5
48dbj|AB088114.1| Homo sapiens STG, S, SPR1, SEEK1 genes 42 1.5
49dbj|AB023060.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 42 1.5
50gb|AY596558.1| Saccharum officinarum clone SCVPRT2074F10, comple... 40 5.8
51gb|AC123063.4| Mus musculus BAC clone RP23-219I20 from 5, comple... 40 5.8
52emb|CR533578.7| Zebrafish DNA sequence from clone CH211-216F21 i... 40 5.8
53gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.8
54emb|AL359075.15| Human DNA sequence from clone RP11-568K15 on ch... 40 5.8
55gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.8
56gb|AC129292.4| Mus musculus chromosome 5 clone RP24-507A8, compl... 40 5.8
57emb|AL133259.24| Human DNA sequence from clone RP1-258E1 on chro... 40 5.8
58emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.8
59emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.8
60emb|BX640431.1| Bordetella parapertussis strain 12822, complete ... 40 5.8
61gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 5.8
62gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 5.8
63gb|AC079054.6| Homo sapiens chromosome 8, clone RP11-158A14, com... 40 5.8
64gb|S40610.1| IgA H=immunoglobulin alpha heavy chain [chickens, m... 40 5.8
65gb|AC008093.4|AC008093 Drosophila melanogaster, chromosome 3R, r... 40 5.8
66ref|XM_394134.2| PREDICTED: Apis mellifera similar to CG9151-PA,... 40 5.8
67gb|AF308446.1|AF308446 Paracoccus pantotrophus cytochrome c biog... 40 5.8
68dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.8
69gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Ca... 40 5.8
70gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Can... 40 5.8
71dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
72emb|BX005048.9| Zebrafish DNA sequence from clone CH211-167M1, c... 40 5.8
73emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.8
74emb|AL512348.8| Human DNA sequence from clone RP11-361M3 on chro... 40 5.8
75gb|AE003677.3| Drosophila melanogaster chromosome 3R, section 15... 40 5.8
76gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.8
77gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 40 5.8 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 367      gcgccgtggtcgccgccgcgccggcg 392
                |||||||||||||||||| |||||||
Sbjct: 32899558 gcgccgtggtcgccgccgtgccggcg 32899533



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 22       tatgataaactcagtgacatg 42
                |||||||||||||||||||||
Sbjct: 21807200 tatgataaactcagtgacatg 21807220
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>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete
             sequence
          Length = 151479

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 367   gcgccgtggtcgccgccgcgccggcg 392
             |||||||||||||||||| |||||||
Sbjct: 90617 gcgccgtggtcgccgccgtgccggcg 90642
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>gb|AC110792.3| Homo sapiens BAC clone RP11-571I18 from 4, complete sequence
          Length = 170202

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 243    gctaattatagtactcattcat 264
              ||||||||||||||||||||||
Sbjct: 145581 gctaattatagtactcattcat 145602
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 367      gcgccgtggtcgccgccgcgccggcg 392
                |||||||||||||||||| |||||||
Sbjct: 32990068 gcgccgtggtcgccgccgtgccggcg 32990043



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 22       tatgataaactcagtgacatg 42
                |||||||||||||||||||||
Sbjct: 21800229 tatgataaactcagtgacatg 21800249
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>ref|XM_467243.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1566

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 328 cggccgcggccgcggccgacg 348
           |||||||||||||||||||||
Sbjct: 275 cggccgcggccgcggccgacg 255
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>ref|XM_519771.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ20421
           (LOC464189), mRNA
          Length = 866

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 331 ccgcggccgcggccgacgggg 351
           |||||||||||||||||||||
Sbjct: 319 ccgcggccgcggccgacgggg 339
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 320     cgacacgccggccgcggccgc 340
               |||||||||||||||||||||
Sbjct: 2300426 cgacacgccggccgcggccgc 2300446
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>ref|NM_191086.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 642

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 317 cgccgacacgccggccgcggccgcg 341
           ||||||| |||||||||||||||||
Sbjct: 423 cgccgacgcgccggccgcggccgcg 399
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>gb|BT018781.1| Zea mays clone EL01N0526F09.d mRNA sequence
          Length = 2283

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 acgccggccgcggccgcggcc 344
           |||||||||||||||||||||
Sbjct: 340 acgccggccgcggccgcggcc 320
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 323     cacgccggccgcggccgcggc 343
               |||||||||||||||||||||
Sbjct: 1251823 cacgccggccgcggccgcggc 1251843



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 369    gccgtggtcgccgccgcgccggcg 392
              |||||| |||||||||||||||||
Sbjct: 119176 gccgtgctcgccgccgcgccggcg 119153
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>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete
             sequence
          Length = 139771

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    tatgataaactcagtgacatg 42
             |||||||||||||||||||||
Sbjct: 80616 tatgataaactcagtgacatg 80596
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 323     cacgccggccgcggccgcggc 343
               |||||||||||||||||||||
Sbjct: 2253540 cacgccggccgcggccgcggc 2253520



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 369    gccgtggtcgccgccgcgccggcg 392
              |||||| |||||||||||||||||
Sbjct: 582107 gccgtgctcgccgccgcgccggcg 582130
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>gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001/HLA-Cw0602 genomic
              sequence
          Length = 346809

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    catgcccactgccacctccgc 244
              |||||||||||||||||||||
Sbjct: 249880 catgcccactgccacctccgc 249900
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>gb|DQ249181.1| Homo sapiens isolate 541CLS37 haplotype HLA-B070201/HLA-Cw07020103
              genomic sequence
          Length = 341361

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    catgcccactgccacctccgc 244
              |||||||||||||||||||||
Sbjct: 252935 catgcccactgccacctccgc 252955
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>gb|DQ249180.1| Homo sapiens isolate 495CLS44 haplotype HLA-B570101/HLA-Cw0602 genomic
              sequence
          Length = 265420

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    catgcccactgccacctccgc 244
              |||||||||||||||||||||
Sbjct: 253041 catgcccactgccacctccgc 253061
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>gb|DQ249179.1| Homo sapiens isolate 495CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic
              sequence
          Length = 338517

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    catgcccactgccacctccgc 244
              |||||||||||||||||||||
Sbjct: 249248 catgcccactgccacctccgc 249268
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>gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B15010101/HLA-Cw030401
              genomic sequence
          Length = 351341

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    catgcccactgccacctccgc 244
              |||||||||||||||||||||
Sbjct: 264873 catgcccactgccacctccgc 264893
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>gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 363675

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    catgcccactgccacctccgc 244
              |||||||||||||||||||||
Sbjct: 264651 catgcccactgccacctccgc 264671
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>gb|DQ249175.1| Homo sapiens isolate 144CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic
              sequence
          Length = 328871

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    catgcccactgccacctccgc 244
              |||||||||||||||||||||
Sbjct: 250232 catgcccactgccacctccgc 250252
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>gb|DQ249174.1| Homo sapiens isolate 144CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic
              sequence
          Length = 338544

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    catgcccactgccacctccgc 244
              |||||||||||||||||||||
Sbjct: 260938 catgcccactgccacctccgc 260958
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>gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 336776

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    catgcccactgccacctccgc 244
              |||||||||||||||||||||
Sbjct: 243750 catgcccactgccacctccgc 243770
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>gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic
              sequence
          Length = 342745

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    catgcccactgccacctccgc 244
              |||||||||||||||||||||
Sbjct: 241548 catgcccactgccacctccgc 241568
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>emb|CR938714.3| Human DNA sequence from clone DAMC-338G21 on chromosome 6, complete
            sequence
          Length = 10602

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 224  catgcccactgccacctccgc 244
            |||||||||||||||||||||
Sbjct: 1311 catgcccactgccacctccgc 1291
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>emb|AL773544.5| Human DNA sequence from clone DAQB-185I1 on chromosome 6 Contains the
             C6orf15 gene for chromosome 6 open reading frame 15, the
             CDSN gene for corneodesmosin, the PSORS1C1 gene for
             psoriasis susceptibility 1 candidate 1, the PSORS1C2 gene
             for psoriasis susceptibility 1 candidate 2, the POLR2LP
             pseudogene for polymerase (RNA) II (DNA directed)
             polypeptide L, the C6orf18 gene for chromosome 6 open
             reading frame 18, the TCF19 gene for transcription factor
             19 (SC1), the POU5F1 gene for POU domain, class 5,
             transcription factor 1, the PSORS1C3 gene for psoriasis
             susceptibility 1 candidate 3, and 1 CpG island, complete
             sequence
          Length = 113388

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   catgcccactgccacctccgc 244
             |||||||||||||||||||||
Sbjct: 47901 catgcccactgccacctccgc 47881
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>emb|AL662844.12| Human DNA sequence from clone XXbac-299F13 on chromosome 6 contains the
             gene for STG protein, the CDSN gene for corneodesmosin,
             the gene for SEEK1 protein, the gene for SPR1 protein, the
             gene for HCR, the TCF19 gene for transcription factor 19,
             the POU5F1 gene for POU domain, class 5, transcription
             factor 1, a putative novel transcript and four CpG
             islands, complete sequence
          Length = 204298

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   catgcccactgccacctccgc 244
             |||||||||||||||||||||
Sbjct: 65576 catgcccactgccacctccgc 65556
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>emb|AL662867.5| Human DNA sequence from clone XXbac-34D1 on chromosome 6 contains the
             genes for STG protein, SEEK1 protein, SPR1 protein and the
             CDSN gene for corneodesmosin, complete sequence
          Length = 70288

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   catgcccactgccacctccgc 244
             |||||||||||||||||||||
Sbjct: 55489 catgcccactgccacctccgc 55469
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 323     cacgccggccgcggccgcggc 343
               |||||||||||||||||||||
Sbjct: 2121169 cacgccggccgcggccgcggc 2121189



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 369    gccgtggtcgccgccgcgccggcg 392
              |||||| |||||||||||||||||
Sbjct: 390697 gccgtgctcgccgccgcgccggcg 390720
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>emb|CR936880.3| Human DNA sequence from clone DAMC-257B19 on chromosome 6, complete
            sequence
          Length = 6810

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 224  catgcccactgccacctccgc 244
            |||||||||||||||||||||
Sbjct: 6182 catgcccactgccacctccgc 6162
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>emb|BX927139.8| Human DNA sequence from clone DAMA-72F24 on chromosome 6, complete
              sequence
          Length = 135396

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 224    catgcccactgccacctccgc 244
              |||||||||||||||||||||
Sbjct: 117610 catgcccactgccacctccgc 117590
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>emb|CR753819.5| Human DNA sequence from clone DADB-141O4 on chromosome 6, complete
             sequence
          Length = 81418

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   catgcccactgccacctccgc 244
             |||||||||||||||||||||
Sbjct: 47354 catgcccactgccacctccgc 47334
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 377     cgccgccgcgccggcgtcgct 397
               |||||||||||||||||||||
Sbjct: 4609755 cgccgccgcgccggcgtcgct 4609775
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>dbj|AB202103.1| Homo sapiens C6orf15, C6orf16, CDSN, C6orf17 genes for chromosome 6
             open reading frame 15, chromosome 6 open reading frame 16,
             corneodesmosin, chromosome 6 open reading frame 17,
             complete cds
          Length = 30921

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   catgcccactgccacctccgc 244
             |||||||||||||||||||||
Sbjct: 16179 catgcccactgccacctccgc 16159
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>gb|AE005910.1| Caulobacter crescentus CB15 section 236 of 359 of the complete genome
          Length = 13852

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 377  cgccgccgcgccggcgtcgct 397
            |||||||||||||||||||||
Sbjct: 9566 cgccgccgcgccggcgtcgct 9586
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>ref|XM_397369.2| PREDICTED: Apis mellifera similar to MGC80272 protein (LOC413930),
            mRNA
          Length = 1956

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 186  aattggaacattatattgttc 206
            |||||||||||||||||||||
Sbjct: 1620 aattggaacattatattgttc 1640
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 328      cggccgcggccgcggccgacg 348
                |||||||||||||||||||||
Sbjct: 28408937 cggccgcggccgcggccgacg 28408917



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 372      gtggtcgccgccgcgccggc 391
                ||||||||||||||||||||
Sbjct: 24451311 gtggtcgccgccgcgccggc 24451292
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 317      cgccgacacgccggccgcggccgcg 341
                ||||||| |||||||||||||||||
Sbjct: 34794987 cgccgacgcgccggccgcggccgcg 34794963
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>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1148D12
          Length = 132060

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 317    cgccgacacgccggccgcggccgcg 341
              ||||||| |||||||||||||||||
Sbjct: 110227 cgccgacgcgccggccgcggccgcg 110203
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>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    catgcccactgccacctccgc 244
              |||||||||||||||||||||
Sbjct: 816010 catgcccactgccacctccgc 816030
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>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0454H12
          Length = 161004

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 317   cgccgacacgccggccgcggccgcg 341
             ||||||| |||||||||||||||||
Sbjct: 54159 cgccgacgcgccggccgcggccgcg 54135
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>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1148_D05
          Length = 155146

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 328   cggccgcggccgcggccgacg 348
             |||||||||||||||||||||
Sbjct: 33058 cggccgcggccgcggccgacg 33038
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 325     cgccggccgcggccgcggccg 345
               |||||||||||||||||||||
Sbjct: 5725502 cgccggccgcggccgcggccg 5725482



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 371     cgtggtcgccgccgcgccgg 390
               ||||||||||||||||||||
Sbjct: 5726222 cgtggtcgccgccgcgccgg 5726203



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 319     ccgacacgccggccgcggcc 338
               ||||||||||||||||||||
Sbjct: 3783188 ccgacacgccggccgcggcc 3783169
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>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 375    gtcgccgccgcgccggcgtcg 395
              |||||||||||||||||||||
Sbjct: 100743 gtcgccgccgcgccggcgtcg 100763
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>dbj|AK060695.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D07, full
           insert sequence
          Length = 1566

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 328 cggccgcggccgcggccgacg 348
           |||||||||||||||||||||
Sbjct: 275 cggccgcggccgcggccgacg 255
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>gb|U39958.1|ZMU39958 Zea mays NADP-malic enzyme root isoform mRNA, complete cds
          Length = 2310

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 acgccggccgcggccgcggcc 344
           |||||||||||||||||||||
Sbjct: 322 acgccggccgcggccgcggcc 302
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>gb|AY315822.1| Zea mays non-photosynthetic NADP-malic enzyme mRNA, complete cds
          Length = 1935

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 acgccggccgcggccgcggcc 344
           |||||||||||||||||||||
Sbjct: 233 acgccggccgcggccgcggcc 213
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>gb|AC004195.1|AC004195 Homo sapiens clone UWGC:y24c027 from 6p21, complete sequence
          Length = 40878

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   catgcccactgccacctccgc 244
             |||||||||||||||||||||
Sbjct: 39326 catgcccactgccacctccgc 39346
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>gb|AC006163.1|AC006163 Homo sapiens clone UWGC:y24c203 from 6p21, complete sequence
          Length = 44379

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 224  catgcccactgccacctccgc 244
            |||||||||||||||||||||
Sbjct: 1443 catgcccactgccacctccgc 1463
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>dbj|AB088114.1| Homo sapiens STG, S, SPR1, SEEK1 genes
          Length = 30911

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   catgcccactgccacctccgc 244
             |||||||||||||||||||||
Sbjct: 16177 catgcccactgccacctccgc 16157
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>dbj|AB023060.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
             clone:TY1C2, complete sequence
          Length = 39196

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   catgcccactgccacctccgc 244
             |||||||||||||||||||||
Sbjct: 22875 catgcccactgccacctccgc 22895
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>gb|AY596558.1| Saccharum officinarum clone SCVPRT2074F10, complete sequence
          Length = 1366

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 367  gcgccgtggtcgccgccgcgccgg 390
            ||||| ||||||||||||||||||
Sbjct: 1285 gcgccctggtcgccgccgcgccgg 1308
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>gb|AC123063.4| Mus musculus BAC clone RP23-219I20 from 5, complete sequence
          Length = 204795

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 226   tgcccactgccacctccgctaatt 249
             |||||||||||||||| |||||||
Sbjct: 45179 tgcccactgccacctctgctaatt 45156
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>emb|CR533578.7| Zebrafish DNA sequence from clone CH211-216F21 in linkage group 16,
              complete sequence
          Length = 214872

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    acattatattgttcaggaaa 212
              ||||||||||||||||||||
Sbjct: 214586 acattatattgttcaggaaa 214567
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 383    cgcgccggcgtcgcttccgg 402
              ||||||||||||||||||||
Sbjct: 754369 cgcgccggcgtcgcttccgg 754388
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>emb|AL359075.15| Human DNA sequence from clone RP11-568K15 on chromosome 1 Contains the
             5' end of a gene for regucalcin gene promotor region
             related protein (RGPR), DKFZp686C2486, complete sequence
          Length = 119859

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   aagaaccagcttttatttca 136
             ||||||||||||||||||||
Sbjct: 44611 aagaaccagcttttatttca 44630
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 369   gccgtggtcgccgccgcgccggcg 392
             ||||||||||||||||||| ||||
Sbjct: 88862 gccgtggtcgccgccgcgcaggcg 88839
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>gb|AC129292.4| Mus musculus chromosome 5 clone RP24-507A8, complete sequence
          Length = 186200

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 226    tgcccactgccacctccgctaatt 249
              |||||||||||||||| |||||||
Sbjct: 120072 tgcccactgccacctctgctaatt 120049
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>emb|AL133259.24| Human DNA sequence from clone RP1-258E1 on chromosome 6 Contains the 3'
             end of the CD83 gene for CD83 antigen (activated B
             lymphocytes, immunoglobulin superfamily), complete
             sequence
          Length = 72979

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   tccccatgcccactgccacc 239
             ||||||||||||||||||||
Sbjct: 26783 tccccatgcccactgccacc 26764
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    cgccggccgcggccgcggcc 344
              ||||||||||||||||||||
Sbjct: 390433 cgccggccgcggccgcggcc 390414
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>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16
          Length = 348706

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 312    gccggcgccgacacgccggccgcg 335
              |||||||||||| |||||||||||
Sbjct: 184178 gccggcgccgacgcgccggccgcg 184201
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>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 312    gccggcgccgacacgccggccgcg 335
              |||||||||||| |||||||||||
Sbjct: 112261 gccggcgccgacgcgccggccgcg 112238
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    cgccggccgcggccgcggcc 344
              ||||||||||||||||||||
Sbjct: 453309 cgccggccgcggccgcggcc 453290
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    tgcccactgccacctccgct 245
              ||||||||||||||||||||
Sbjct: 821009 tgcccactgccacctccgct 821028
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>gb|AC079054.6| Homo sapiens chromosome 8, clone RP11-158A14, complete sequence
          Length = 175834

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   aagaaccagcttttatttca 136
             ||||||||||||||||||||
Sbjct: 10092 aagaaccagcttttatttca 10073
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>gb|S40610.1| IgA H=immunoglobulin alpha heavy chain [chickens, mRNA, 1866 nt]
          Length = 1866

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 332  cgcggccgcggccgacgggg 351
            ||||||||||||||||||||
Sbjct: 1158 cgcggccgcggccgacgggg 1177
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>gb|AC008093.4|AC008093 Drosophila melanogaster, chromosome 3R, region 84F-84F, BAC clone
             BACR07M14, complete sequence
          Length = 181950

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   ttttatttcaatcgaaaata 146
             ||||||||||||||||||||
Sbjct: 62481 ttttatttcaatcgaaaata 62462
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>ref|XM_394134.2| PREDICTED: Apis mellifera similar to CG9151-PA, isoform A
           (LOC410657), mRNA
          Length = 1095

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 gccggccgcggccgcggccg 345
           ||||||||||||||||||||
Sbjct: 594 gccggccgcggccgcggccg 575
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>gb|AF308446.1|AF308446 Paracoccus pantotrophus cytochrome c biogenesis protein CcdA (ccdA)
           and enoyl coenzyme A hydratase-like protein genes,
           complete cds; and unknown gene
          Length = 2774

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 358 cggcagaaggcgccgtggtcgccgccgcgccg 389
           |||||| | ||||||| |||||||||||||||
Sbjct: 369 cggcagcaagcgccgtcgtcgccgccgcgccg 400
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 365     aggcgccgtggtcgccgccg 384
               ||||||||||||||||||||
Sbjct: 5276358 aggcgccgtggtcgccgccg 5276377



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 386     gccggcgtcgcttccggacgggcc 409
               |||||||||||| |||||||||||
Sbjct: 5158963 gccggcgtcgctgccggacgggcc 5158940
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>gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160095

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    aagaaccagcttttatttca 136
              ||||||||||||||||||||
Sbjct: 156374 aagaaccagcttttatttca 156393
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>gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 199945

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 128   tttatttcaatcgaaaataggaaa 151
             ||||||||||| ||||||||||||
Sbjct: 38200 tttatttcaatggaaaataggaaa 38223
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>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1792_D02
          Length = 141649

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   gtggtcgccgccgcgccggc 391
             ||||||||||||||||||||
Sbjct: 79517 gtggtcgccgccgcgccggc 79498
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>emb|BX005048.9| Zebrafish DNA sequence from clone CH211-167M1, complete sequence
          Length = 163525

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      tttaaaaattatatcagtca 21
              ||||||||||||||||||||
Sbjct: 143686 tttaaaaattatatcagtca 143705
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 312     gccggcgccgacacgccggccgcg 335
               |||||||||| |||||||||||||
Sbjct: 2633319 gccggcgccggcacgccggccgcg 2633342



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    gacacgccggccgcggccgc 340
              ||||||||||||||||||||
Sbjct: 747012 gacacgccggccgcggccgc 747031
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>emb|AL512348.8| Human DNA sequence from clone RP11-361M3 on chromosome 1, complete
             sequence
          Length = 173447

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   aagaaccagcttttatttca 136
             ||||||||||||||||||||
Sbjct: 65845 aagaaccagcttttatttca 65826
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>gb|AE003677.3| Drosophila melanogaster chromosome 3R, section 15 of 118 of the
             complete sequence
          Length = 228314

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   ttttatttcaatcgaaaata 146
             ||||||||||||||||||||
Sbjct: 40876 ttttatttcaatcgaaaata 40857
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 325     cgccggccgcggccgcggcc 344
               ||||||||||||||||||||
Sbjct: 4718914 cgccggccgcggccgcggcc 4718895
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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     ttcaggaaatgcttcctccc 223
               ||||||||||||||||||||
Sbjct: 1763465 ttcaggaaatgcttcctccc 1763446


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,329,651
Number of Sequences: 3902068
Number of extensions: 4329651
Number of successful extensions: 108250
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105069
Number of HSP's gapped (non-prelim): 3181
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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