ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast62b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474166.1| Oryza sativa (japonica cultivar-group), predic... 145 1e-31
2dbj|AK099088.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
3dbj|AK062107.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
4gb|AF072849.1|AF072849 Oryza sativa subsp. indica jab1 protein (... 145 1e-31
5dbj|AB055495.1| Oryza sativa Jab1 mRNA for JUN-activation-domain... 145 1e-31
6gb|AY107938.1| Zea mays PCO066126 mRNA sequence 121 2e-24
7emb|AL606446.1|OSJN00016 Oryza sativa genomic DNA, chromosome 4,... 86 1e-13
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
9dbj|AB095022.1| Oryza sativa (japonica cultivar-group) Jab1 gene... 86 1e-13
10emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4,... 86 1e-13
11gb|AF014375.1|AF014375 Medicago sativa putative JUN kinase activ... 64 4e-07
12gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete s... 48 0.025
13ref|XM_779311.1| PREDICTED: Strongylocentrotus purpuratus simila... 46 0.097
14emb|CR936738.1| Homo sapiens mRNA; cDNA DKFZp686E1042 (from clon... 44 0.38
15gb|AC113372.2| Homo sapiens chromosome 5 clone RP11-160H11, comp... 44 0.38
16gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, compl... 44 0.38
17gb|AC158316.3| Mus musculus chromosome 8, clone RP23-189N8, comp... 40 6.0
18gb|AC115891.7| Mus musculus chromosome 10, clone RP24-421G4, com... 40 6.0
19gb|AC110043.6| Mus musculus chromosome 10, clone RP23-296O20, co... 40 6.0
20emb|AL050342.42|HSDJ655K7 Human DNA sequence from clone RP4-655K... 40 6.0
21emb|CR376857.8| Zebrafish DNA sequence from clone DKEYP-44A3 in ... 40 6.0
22gb|AC161002.2| Mus musculus BAC clone RP23-6N4 from chromosome 7... 40 6.0
23dbj|D86547.1| Drosophila melanogaster mRNA for still life type 1... 40 6.0
24dbj|D86546.1| Drosophila melanogaster mRNA for still life type 2... 40 6.0
25gb|AC093500.2| Drosophila melanogaster 3L BAC RP98-29P5 (Roswell... 40 6.0
26gb|AC010661.8| Drosophila melanogaster 3L BAC RP98-13A12 (Roswel... 40 6.0
27gb|AY118305.1| Drosophila melanogaster GH10341 full insert cDNA 40 6.0
28ref|NM_206278.1| Drosophila melanogaster still life CG5406-RC, t... 40 6.0
29ref|NM_168126.1| Drosophila melanogaster still life CG5406-RB, t... 40 6.0
30ref|NM_079908.2| Drosophila melanogaster still life CG5406-RA, t... 40 6.0
31gb|AC150900.5| Mus musculus BAC clone RP23-145O23 from chromosom... 40 6.0
32gb|AC104086.6| Homo sapiens BAC clone RP11-635P21 from 2, comple... 40 6.0
33gb|AC009484.3| Homo sapiens BAC clone RP11-313O11 from 2, comple... 40 6.0
34emb|AJ277557.1|HSA277557 Homo sapiens dNT-2 gene for mitochondri... 40 6.0
35gb|AE003565.3| Drosophila melanogaster chromosome 3L, section 20... 40 6.0
36gb|AC006071.1|AC006071 Homo sapiens chromosome 17, clone hCIT.12... 40 6.0
37gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 40 6.0
38gb|AC107236.8| Mus musculus chromosome 8, clone RP23-296C23, com... 40 6.0 
>ref|XM_474166.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1083

 Score =  145 bits (73), Expect = 1e-31
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 348  ttgacgggtgcacagagttgaagaggatgtccttgatgacctgtgacatgagaccatgaa 407
            |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 1024 ttgacgggtgcacagagttgaagaggatatccttaatgacctgtgacatgagaccatgga 965

                                                 
Query: 408  cctgttcagcagtgattttggagctatcccgggttac 444
            ||||||||||||| ||||| ||||||||||| |||||
Sbjct: 964  cctgttcagcagtaatttttgagctatcccgagttac 928
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>dbj|AK099088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007N04, full
            insert sequence
          Length = 1537

 Score =  145 bits (73), Expect = 1e-31
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 348  ttgacgggtgcacagagttgaagaggatgtccttgatgacctgtgacatgagaccatgaa 407
            |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 1121 ttgacgggtgcacagagttgaagaggatatccttaatgacctgtgacatgagaccatgga 1062

                                                 
Query: 408  cctgttcagcagtgattttggagctatcccgggttac 444
            ||||||||||||| ||||| ||||||||||| |||||
Sbjct: 1061 cctgttcagcagtaatttttgagctatcccgagttac 1025
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>dbj|AK062107.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B03, full
            insert sequence
          Length = 1532

 Score =  145 bits (73), Expect = 1e-31
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 348  ttgacgggtgcacagagttgaagaggatgtccttgatgacctgtgacatgagaccatgaa 407
            |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 1143 ttgacgggtgcacagagttgaagaggatatccttaatgacctgtgacatgagaccatgga 1084

                                                 
Query: 408  cctgttcagcagtgattttggagctatcccgggttac 444
            ||||||||||||| ||||| ||||||||||| |||||
Sbjct: 1083 cctgttcagcagtaatttttgagctatcccgagttac 1047
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>gb|AF072849.1|AF072849 Oryza sativa subsp. indica jab1 protein (jab1) mRNA, complete cds
          Length = 1379

 Score =  145 bits (73), Expect = 1e-31
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 348  ttgacgggtgcacagagttgaagaggatgtccttgatgacctgtgacatgagaccatgaa 407
            |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 1096 ttgacgggtgcacagagttgaagaggatatccttaatgacctgtgacatgagaccatgga 1037

                                                 
Query: 408  cctgttcagcagtgattttggagctatcccgggttac 444
            ||||||||||||| ||||| ||||||||||| |||||
Sbjct: 1036 cctgttcagcagtaatttttgagctatcccgagttac 1000
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>dbj|AB055495.1| Oryza sativa Jab1 mRNA for JUN-activation-domain-binding protein
            homolog, complete cds
          Length = 1267

 Score =  145 bits (73), Expect = 1e-31
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 348  ttgacgggtgcacagagttgaagaggatgtccttgatgacctgtgacatgagaccatgaa 407
            |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 1068 ttgacgggtgcacagagttgaagaggatatccttaatgacctgtgacatgagaccatgga 1009

                                                 
Query: 408  cctgttcagcagtgattttggagctatcccgggttac 444
            ||||||||||||| ||||| ||||||||||| |||||
Sbjct: 1008 cctgttcagcagtaatttttgagctatcccgagttac 972
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>gb|AY107938.1| Zea mays PCO066126 mRNA sequence
          Length = 1034

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/101 (90%)
 Strand = Plus / Minus

                                                                       
Query: 344 ttgcttgacgggtgcacagagttgaagaggatgtccttgatgacctgtgacatgagacca 403
           |||||||||||||| ||||||||||| |||||||| || ||||||||||||||||| || 
Sbjct: 632 ttgcttgacgggtgaacagagttgaaaaggatgtcttttatgacctgtgacatgaggccg 573

                                                    
Query: 404 tgaacctgttcagcagtgattttggagctatcccgggttac 444
           |||||||| ||||| ||||||||||||||||| || |||||
Sbjct: 572 tgaacctgctcagctgtgattttggagctatctcgtgttac 532
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>emb|AL606446.1|OSJN00016 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16,
             complete sequence
          Length = 119535

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                        
Query: 386   acctgtgacatgagaccatgaacctgttcagcagtgattttggagctatcccgggttac 444
             |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 77199 acctgtgacatgagaccatggacctgttcagcagtaatttttgagctatcccgagttac 77141



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                       
Query: 348   ttgacgggtgcacagagttgaagaggatgtccttgatgacct 389
             |||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 77334 ttgacgggtgcacagagttgaagaggatatccttaatgacct 77293
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                           
Query: 386      acctgtgacatgagaccatgaacctgttcagcagtgattttggagctatcccgggttac 444
                |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 33431320 acctgtgacatgagaccatggacctgttcagcagtaatttttgagctatcccgagttac 33431262



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                          
Query: 348      ttgacgggtgcacagagttgaagaggatgtccttgatgacct 389
                |||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 33431455 ttgacgggtgcacagagttgaagaggatatccttaatgacct 33431414
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>dbj|AB095022.1| Oryza sativa (japonica cultivar-group) Jab1 gene for
            JUN-activation-domain-binding protein 1, complete cds
          Length = 4180

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                       
Query: 386  acctgtgacatgagaccatgaacctgttcagcagtgattttggagctatcccgggttac 444
            |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 3389 acctgtgacatgagaccatggacctgttcagcagtaatttttgagctatcccgagttac 3331



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 348  ttgacgggtgcacagagttgaagaggatgtccttgatgacct 389
            |||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 3524 ttgacgggtgcacagagttgaagaggatatccttaatgacct 3483
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>emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13,
            complete sequence
          Length = 152264

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                       
Query: 386  acctgtgacatgagaccatgaacctgttcagcagtgattttggagctatcccgggttac 444
            |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 7509 acctgtgacatgagaccatggacctgttcagcagtaatttttgagctatcccgagttac 7451



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 348  ttgacgggtgcacagagttgaagaggatgtccttgatgacct 389
            |||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 7644 ttgacgggtgcacagagttgaagaggatatccttaatgacct 7603
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>gb|AF014375.1|AF014375 Medicago sativa putative JUN kinase activation domain binding protein
            mRNA, complete cds
          Length = 1321

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 359  acagagttgaagaggatgtccttgatgacctgtgacatgagaccatgaacctgttcagca 418
            ||||||||||| |||||||||||||| ||||||||||| | ||| || || |||||| ||
Sbjct: 1058 acagagttgaacaggatgtccttgattacctgtgacattaaaccgtgcacttgttcaaca 999

                    
Query: 419  gtgatttt 426
            || |||||
Sbjct: 998  gttatttt 991
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>gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete sequence
          Length = 162172

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 359    acagagttgaagaggatgtccttgatgacctg 390
              ||||||||||| |||||||||||||| |||||
Sbjct: 130647 acagagttgaacaggatgtccttgattacctg 130616
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>ref|XM_779311.1| PREDICTED: Strongylocentrotus purpuratus similar to COP9
           constitutive photomorphogenic homolog subunit 5
           (LOC579181), mRNA
          Length = 993

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 379 cttgatgacctgtgacatgagaccatg 405
           ||||||||| |||||||||||||||||
Sbjct: 960 cttgatgacttgtgacatgagaccatg 934
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>emb|CR936738.1| Homo sapiens mRNA; cDNA DKFZp686E1042 (from clone DKFZp686E1042)
          Length = 5988

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 132  tctgatttgacagatgaagctc 153
            ||||||||||||||||||||||
Sbjct: 5635 tctgatttgacagatgaagctc 5656
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>gb|AC113372.2| Homo sapiens chromosome 5 clone RP11-160H11, complete sequence
          Length = 98328

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 132   tctgatttgacagatgaagctc 153
             ||||||||||||||||||||||
Sbjct: 64123 tctgatttgacagatgaagctc 64144
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>gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, complete sequence
          Length = 104475

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 132   tctgatttgacagatgaagctc 153
             ||||||||||||||||||||||
Sbjct: 16385 tctgatttgacagatgaagctc 16406
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>gb|AC158316.3| Mus musculus chromosome 8, clone RP23-189N8, complete sequence
          Length = 183192

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   tgtgacatgagaccatgaac 408
             ||||||||||||||||||||
Sbjct: 55458 tgtgacatgagaccatgaac 55439
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>gb|AC115891.7| Mus musculus chromosome 10, clone RP24-421G4, complete sequence
          Length = 166946

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     agcactagatgcaaaaggta 111
              ||||||||||||||||||||
Sbjct: 149776 agcactagatgcaaaaggta 149795
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>gb|AC110043.6| Mus musculus chromosome 10, clone RP23-296O20, complete sequence
          Length = 158081

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    agcactagatgcaaaaggta 111
             ||||||||||||||||||||
Sbjct: 13884 agcactagatgcaaaaggta 13903
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>emb|AL050342.42|HSDJ655K7 Human DNA sequence from clone RP4-655K7 on chromosome 1p35.3-36.13
             Contains part of a gene encoding a novel protein,,
             complete sequence
          Length = 116857

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 370   gaggatgtccttgatgacctgtga 393
             ||||||| ||||||||||||||||
Sbjct: 63881 gaggatggccttgatgacctgtga 63904
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>emb|CR376857.8| Zebrafish DNA sequence from clone DKEYP-44A3 in linkage group 5, complete
              sequence
          Length = 192909

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 232    agttaaaatccagcatcaaaatgt 255
              |||||||||| |||||||||||||
Sbjct: 180763 agttaaaatcgagcatcaaaatgt 180786
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>gb|AC161002.2| Mus musculus BAC clone RP23-6N4 from chromosome 7, complete sequence
          Length = 182230

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    agttgaagaggatgtccttg 382
              ||||||||||||||||||||
Sbjct: 134546 agttgaagaggatgtccttg 134565
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>dbj|D86547.1| Drosophila melanogaster mRNA for still life type 1, complete cds
          Length = 7854

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  gaatctggagcggctccact 327
            ||||||||||||||||||||
Sbjct: 3217 gaatctggagcggctccact 3236
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>dbj|D86546.1| Drosophila melanogaster mRNA for still life type 2, complete cds
          Length = 9233

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  gaatctggagcggctccact 327
            ||||||||||||||||||||
Sbjct: 4596 gaatctggagcggctccact 4615
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>gb|AC093500.2| Drosophila melanogaster 3L BAC RP98-29P5 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 173558

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   gaatctggagcggctccact 327
             ||||||||||||||||||||
Sbjct: 17577 gaatctggagcggctccact 17596
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>gb|AC010661.8| Drosophila melanogaster 3L BAC RP98-13A12 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 163115

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    gaatctggagcggctccact 327
              ||||||||||||||||||||
Sbjct: 122827 gaatctggagcggctccact 122846
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>gb|AY118305.1| Drosophila melanogaster GH10341 full insert cDNA
          Length = 8646

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  gaatctggagcggctccact 327
            ||||||||||||||||||||
Sbjct: 4595 gaatctggagcggctccact 4614
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>ref|NM_206278.1| Drosophila melanogaster still life CG5406-RC, transcript variant C
            (sif), mRNA
          Length = 9298

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  gaatctggagcggctccact 327
            ||||||||||||||||||||
Sbjct: 4617 gaatctggagcggctccact 4636
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>ref|NM_168126.1| Drosophila melanogaster still life CG5406-RB, transcript variant B
            (sif), mRNA
          Length = 7857

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  gaatctggagcggctccact 327
            ||||||||||||||||||||
Sbjct: 3203 gaatctggagcggctccact 3222
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>ref|NM_079908.2| Drosophila melanogaster still life CG5406-RA, transcript variant A
            (sif), mRNA
          Length = 9271

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  gaatctggagcggctccact 327
            ||||||||||||||||||||
Sbjct: 4617 gaatctggagcggctccact 4636
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>gb|AC150900.5| Mus musculus BAC clone RP23-145O23 from chromosome 7, complete sequence
          Length = 211722

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   agttgaagaggatgtccttg 382
             ||||||||||||||||||||
Sbjct: 56505 agttgaagaggatgtccttg 56524
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>gb|AC104086.6| Homo sapiens BAC clone RP11-635P21 from 2, complete sequence
          Length = 19494

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 271  gaagtatcaagcttcaacca 290
            ||||||||||||||||||||
Sbjct: 1398 gaagtatcaagcttcaacca 1379
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>gb|AC009484.3| Homo sapiens BAC clone RP11-313O11 from 2, complete sequence
          Length = 206074

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 gaagtatcaagcttcaacca 290
           ||||||||||||||||||||
Sbjct: 603 gaagtatcaagcttcaacca 622
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>emb|AJ277557.1|HSA277557 Homo sapiens dNT-2 gene for mitochondrial 5'(3')-deoxyribonucleotidase
             (dNT-2 gene), exons 1-5
          Length = 44327

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   ttctgatttgacagatgaag 150
             ||||||||||||||||||||
Sbjct: 22887 ttctgatttgacagatgaag 22906
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>gb|AE003565.3| Drosophila melanogaster chromosome 3L, section 20 of 83 of the complete
              sequence
          Length = 284268

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    gaatctggagcggctccact 327
              ||||||||||||||||||||
Sbjct: 186814 gaatctggagcggctccact 186833
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>gb|AC006071.1|AC006071 Homo sapiens chromosome 17, clone hCIT.124_H_2, complete sequence
          Length = 93713

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   ttctgatttgacagatgaag 150
             ||||||||||||||||||||
Sbjct: 58535 ttctgatttgacagatgaag 58554
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>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    tgccttgcttttgcttgacg 353
              ||||||||||||||||||||
Sbjct: 286901 tgccttgcttttgcttgacg 286882
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>gb|AC107236.8| Mus musculus chromosome 8, clone RP23-296C23, complete sequence
          Length = 193105

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    tgtgacatgagaccatgaac 408
              ||||||||||||||||||||
Sbjct: 146055 tgtgacatgagaccatgaac 146036


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,910,069
Number of Sequences: 3902068
Number of extensions: 3910069
Number of successful extensions: 63650
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63564
Number of HSP's gapped (non-prelim): 86
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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